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Volumn 15, Issue 1, 2014, Pages

Identification, characterization, and utilization of single copy genes in 29 angiosperm genomes

Author keywords

Alternative splicing; Codon usage; Duplication; GC3; Gene expression; Gene Ontology; Ka Ks; Phylogeny; Single copy gene

Indexed keywords

ALTERNATIVE RNA SPLICING; ANGIOSPERM; ARTICLE; BINDING AFFINITY; CATALYSIS; CELL ORGANELLE; CODON USAGE; DNA BASE COMPOSITION; EUDICOT; GENE EXPRESSION; GENE IDENTIFICATION; GENE ONTOLOGY; INTRON; MONOCOT; NONHUMAN; PHYLOGENETIC TREE; PLANT GENE; PLANT GENOME; SINGLE COPY GENE; BIOLOGY; CLASSIFICATION; CODON; GENE DOSAGE; GENETICS; PHYLOGENY;

EID: 84902707570     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-504     Document Type: Article
Times cited : (28)

References (64)
  • 1
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: an update
    • Zhang J. Evolution by gene duplication: an update. Trends Ecol Evol 2003, 18(6):292-298.
    • (2003) Trends Ecol Evol , vol.18 , Issue.6 , pp. 292-298
    • Zhang, J.1
  • 2
    • 0000016658 scopus 로고
    • Modulation of protein levels in chromosomal dosage series of maize: the biochemical basis of aneuploid syndromes
    • Birchler JA, Newton KJ. Modulation of protein levels in chromosomal dosage series of maize: the biochemical basis of aneuploid syndromes. Genetics 1981, 99(2):247-266.
    • (1981) Genetics , vol.99 , Issue.2 , pp. 247-266
    • Birchler, J.A.1    Newton, K.J.2
  • 3
    • 0029162810 scopus 로고
    • Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution
    • Song K, Lu P, Tang K, Osborn TC. Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc Natl Acad Sci U S A 1995, 92(17):7719-7723.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , Issue.17 , pp. 7719-7723
    • Song, K.1    Lu, P.2    Tang, K.3    Osborn, T.C.4
  • 4
    • 0034866855 scopus 로고    scopus 로고
    • Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
    • Shaked H, Kashkush K, Ozkan H, Feldman M, Levy AA. Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 2001, 13(8):1749-1759.
    • (2001) Plant Cell , vol.13 , Issue.8 , pp. 1749-1759
    • Shaked, H.1    Kashkush, K.2    Ozkan, H.3    Feldman, M.4    Levy, A.A.5
  • 5
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • Papp B, Pal C, Hurst LD. Dosage sensitivity and the evolution of gene families in yeast. Nature 2003, 424(6945):194-197.
    • (2003) Nature , vol.424 , Issue.6945 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 6
    • 15244350824 scopus 로고    scopus 로고
    • Dosage balance in gene regulation: biological implications
    • Birchler JA, Riddle NC, Auger DL, Veitia RA. Dosage balance in gene regulation: biological implications. Trends Genet 2005, 21(4):219-226.
    • (2005) Trends Genet , vol.21 , Issue.4 , pp. 219-226
    • Birchler, J.A.1    Riddle, N.C.2    Auger, D.L.3    Veitia, R.A.4
  • 7
    • 70349682921 scopus 로고    scopus 로고
    • Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes
    • Edger PP, Pires JC. Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res 2009, 17(5):699-717.
    • (2009) Chromosome Res , vol.17 , Issue.5 , pp. 699-717
    • Edger, P.P.1    Pires, J.C.2
  • 8
    • 77952679366 scopus 로고    scopus 로고
    • Ohnologs in the human genome are dosage balanced and frequently associated with disease
    • Makino T, McLysaght A. Ohnologs in the human genome are dosage balanced and frequently associated with disease. Proc Natl Acad Sci U S A 2010, 107(20):9270-9274.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.20 , pp. 9270-9274
    • Makino, T.1    McLysaght, A.2
  • 9
    • 33750173564 scopus 로고    scopus 로고
    • Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon
    • Paterson AH, Chapman BA, Kissinger JC, Bowers JE, Feltus FA, Estill JC. Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon. Trends Genet 2006, 22(11):597-602.
    • (2006) Trends Genet , vol.22 , Issue.11 , pp. 597-602
    • Paterson, A.H.1    Chapman, B.A.2    Kissinger, J.C.3    Bowers, J.E.4    Feltus, F.A.5    Estill, J.C.6
  • 10
    • 77950191132 scopus 로고    scopus 로고
    • Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels
    • Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, de Pamphilis CW. Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. BMC Evol Biol 2010, 10:61.
    • (2010) BMC Evol Biol , vol.10 , pp. 61
    • Duarte, J.M.1    Wall, P.K.2    Edger, P.P.3    Landherr, L.L.4    Ma, H.5    Pires, J.C.6    Leebens-Mack, J.7    de Pamphilis, C.W.8
  • 11
  • 12
    • 0346091308 scopus 로고    scopus 로고
    • Use of nuclear genes for phylogeny reconstruction in plants
    • Small RL, Cronn RC, Wendel JF. Use of nuclear genes for phylogeny reconstruction in plants. Aust Syst Bot 2004, 17(2):145-170.
    • (2004) Aust Syst Bot , vol.17 , Issue.2 , pp. 145-170
    • Small, R.L.1    Cronn, R.C.2    Wendel, J.F.3
  • 13
    • 33751344142 scopus 로고    scopus 로고
    • Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade
    • Wu F, Mueller LA, Crouzillat D, Pétiard V, Tanksley SD. Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade. Genetics 2006, 174(3):1407-1420.
    • (2006) Genetics , vol.174 , Issue.3 , pp. 1407-1420
    • Wu, F.1    Mueller, L.A.2    Crouzillat, D.3    Pétiard, V.4    Tanksley, S.D.5
  • 14
    • 52949127350 scopus 로고    scopus 로고
    • Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species
    • Li M, Wunder J, Bissoli G, Scarponi E, Gazzani S, Barbaro E, Saedler H, Varotto C. Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species. Cladistics 2008, 24(5):727-745.
    • (2008) Cladistics , vol.24 , Issue.5 , pp. 727-745
    • Li, M.1    Wunder, J.2    Bissoli, G.3    Scarponi, E.4    Gazzani, S.5    Barbaro, E.6    Saedler, H.7    Varotto, C.8
  • 15
    • 0033176347 scopus 로고    scopus 로고
    • Chloroplast-expressed glutamine synthetase (ncpGS): potential utility for phylogenetic studies with an example from Oxalis (Oxalidaceae)
    • Emshwiller E, Doyle JJ. Chloroplast-expressed glutamine synthetase (ncpGS): potential utility for phylogenetic studies with an example from Oxalis (Oxalidaceae). Mol Phylogenet Evol 1999, 12(3):310-319.
    • (1999) Mol Phylogenet Evol , vol.12 , Issue.3 , pp. 310-319
    • Emshwiller, E.1    Doyle, J.J.2
  • 16
    • 0025941139 scopus 로고
    • The selection-mutation-drift theory of synonymous codon usage
    • Bulmer M. The selection-mutation-drift theory of synonymous codon usage. Genetics 1991, 129(3):897-907.
    • (1991) Genetics , vol.129 , Issue.3 , pp. 897-907
    • Bulmer, M.1
  • 17
    • 0028220048 scopus 로고
    • Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy
    • Akashi H. Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. Genetics 1994, 136(3):927-935.
    • (1994) Genetics , vol.136 , Issue.3 , pp. 927-935
    • Akashi, H.1
  • 18
    • 34547709593 scopus 로고    scopus 로고
    • Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals
    • Parmley JL, Hurst LD. Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals. Mol Biol Evol 2007, 24(8):1600-1603.
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1600-1603
    • Parmley, J.L.1    Hurst, L.D.2
  • 19
    • 67649356943 scopus 로고    scopus 로고
    • Translationally optimal codons associate with structurally sensitive sites in proteins
    • Zhou T, Weems M, Wilke CO. Translationally optimal codons associate with structurally sensitive sites in proteins. Mol Biol Evol 2009, 26(7):1571-1580.
    • (2009) Mol Biol Evol , vol.26 , Issue.7 , pp. 1571-1580
    • Zhou, T.1    Weems, M.2    Wilke, C.O.3
  • 20
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • Wright F. The 'effective number of codons' used in a gene. Gene 1990, 87(1):23-29.
    • (1990) Gene , vol.87 , Issue.1 , pp. 23-29
    • Wright, F.1
  • 21
    • 0023650543 scopus 로고
    • The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications
    • Sharp PM, Li WH. The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 1987, 15(3):1281-1295.
    • (1987) Nucleic Acids Res , vol.15 , Issue.3 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 22
    • 39549119513 scopus 로고    scopus 로고
    • An improved implementation of codon adaptation index
    • Xia X. An improved implementation of codon adaptation index. Evol Bioinform Online 2007, 3:53-58.
    • (2007) Evol Bioinform Online , vol.3 , pp. 53-58
    • Xia, X.1
  • 23
    • 0342858851 scopus 로고    scopus 로고
    • Nature and structure of human genes that generate retropseudogenes
    • Gonçalves I, Duret L, Mouchiroud D. Nature and structure of human genes that generate retropseudogenes. Genome Res 2000, 10(5):672-678.
    • (2000) Genome Res , vol.10 , Issue.5 , pp. 672-678
    • Gonçalves, I.1    Duret, L.2    Mouchiroud, D.3
  • 24
    • 0035183199 scopus 로고    scopus 로고
    • Determinants of CpG islands: expression in early embryo and isochore structure
    • Ponger L, Duret L, Mouchiroud D. Determinants of CpG islands: expression in early embryo and isochore structure. Genome Res 2001, 11(11):1854-1860.
    • (2001) Genome Res , vol.11 , Issue.11 , pp. 1854-1860
    • Ponger, L.1    Duret, L.2    Mouchiroud, D.3
  • 25
    • 0036889468 scopus 로고    scopus 로고
    • Evolution of synonymous codon usage in metazoans
    • Duret L. Evolution of synonymous codon usage in metazoans. Curr Opin Genet Dev 2002, 12(6):640-649.
    • (2002) Curr Opin Genet Dev , vol.12 , Issue.6 , pp. 640-649
    • Duret, L.1
  • 28
    • 33745899048 scopus 로고    scopus 로고
    • Alternative splicing: new insights from global analyses
    • Blencowe BJ. Alternative splicing: new insights from global analyses. Cell 2006, 126(1):37-47.
    • (2006) Cell , vol.126 , Issue.1 , pp. 37-47
    • Blencowe, B.J.1
  • 29
    • 33745394130 scopus 로고    scopus 로고
    • Alternative splicing and RNA selection pressure-evolutionary consequences for eukaryotic genomes
    • Xing Y, Lee C. Alternative splicing and RNA selection pressure-evolutionary consequences for eukaryotic genomes. Nat Rev Genet 2006, 7(7):499-509.
    • (2006) Nat Rev Genet , vol.7 , Issue.7 , pp. 499-509
    • Xing, Y.1    Lee, C.2
  • 30
    • 77951120000 scopus 로고    scopus 로고
    • Alternative splicing and evolution: diversification, exon definition and function
    • Keren H, Lev-Maor G, Ast G. Alternative splicing and evolution: diversification, exon definition and function. Nat Rev Genet 2010, 11(5):345-355.
    • (2010) Nat Rev Genet , vol.11 , Issue.5 , pp. 345-355
    • Keren, H.1    Lev-Maor, G.2    Ast, G.3
  • 31
    • 70350218974 scopus 로고    scopus 로고
    • An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
    • The Angiosperm Phylogeny G
    • The Angiosperm Phylogeny G An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot J Linn Soc 2009, 161(2):105-121. The Angiosperm Phylogeny G.
    • (2009) Bot J Linn Soc , vol.161 , Issue.2 , pp. 105-121
  • 32
    • 67650915748 scopus 로고    scopus 로고
    • Gene duplication and evolutionary novelty in plants
    • Flagel LE, Wendel JF. Gene duplication and evolutionary novelty in plants. New Phytol 2009, 183(3):557-564.
    • (2009) New Phytol , vol.183 , Issue.3 , pp. 557-564
    • Flagel, L.E.1    Wendel, J.F.2
  • 33
    • 75549087305 scopus 로고    scopus 로고
    • The evolution of gene duplications: classifying and distinguishing between models
    • Innan H, Kondrashov F. The evolution of gene duplications: classifying and distinguishing between models. Nat Rev Genet 2010, 11(2):97-108.
    • (2010) Nat Rev Genet , vol.11 , Issue.2 , pp. 97-108
    • Innan, H.1    Kondrashov, F.2
  • 34
    • 84862957389 scopus 로고    scopus 로고
    • Dynamic gene copy number variation in collinear regions of grass genomes
    • Xu J-H, Bennetzen JL, Messing J. Dynamic gene copy number variation in collinear regions of grass genomes. Mol Biol Evol 2012, 29(2):861-871.
    • (2012) Mol Biol Evol , vol.29 , Issue.2 , pp. 861-871
    • Xu, J.-H.1    Bennetzen, J.L.2    Messing, J.3
  • 35
    • 38049150491 scopus 로고    scopus 로고
    • A portrait of copy-number polymorphism in Drosophila melanogaster
    • Dopman EB, Hartl DL. A portrait of copy-number polymorphism in Drosophila melanogaster. Proc Natl Acad Sci U S A 2007, 104(50):19920-19925.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , Issue.50 , pp. 19920-19925
    • Dopman, E.B.1    Hartl, D.L.2
  • 38
    • 57149102681 scopus 로고    scopus 로고
    • Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
    • Tang H, Wang X, Bowers JE, Ming R, Alam M, Paterson AH. Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Res 2008, 18(12):1944-1954.
    • (2008) Genome Res , vol.18 , Issue.12 , pp. 1944-1954
    • Tang, H.1    Wang, X.2    Bowers, J.E.3    Ming, R.4    Alam, M.5    Paterson, A.H.6
  • 39
    • 0002232531 scopus 로고
    • Codon usage in higher plants, green algae, and cyanobacteria
    • Campbell WH, Gowri G. Codon usage in higher plants, green algae, and cyanobacteria. Plant Physiol 1990, 92(1):1-11.
    • (1990) Plant Physiol , vol.92 , Issue.1 , pp. 1-11
    • Campbell, W.H.1    Gowri, G.2
  • 40
    • 0027525640 scopus 로고
    • Synonymous codon usage in Zea mays L. nuclear genes is varied by levels of C and G-ending codons
    • Fennoy SL, Bailey-Serres J. Synonymous codon usage in Zea mays L. nuclear genes is varied by levels of C and G-ending codons. Nucleic Acids Res 1993, 21(23):5294-5300.
    • (1993) Nucleic Acids Res , vol.21 , Issue.23 , pp. 5294-5300
    • Fennoy, S.L.1    Bailey-Serres, J.2
  • 41
    • 0028631919 scopus 로고
    • Codon usage and genome evolution
    • Sharp PM, Matassi G. Codon usage and genome evolution. Curr Opin Genet Dev 1994, 4(6):851-860.
    • (1994) Curr Opin Genet Dev , vol.4 , Issue.6 , pp. 851-860
    • Sharp, P.M.1    Matassi, G.2
  • 42
    • 26444593981 scopus 로고    scopus 로고
    • Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences
    • Xing Y, Lee C. Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences. Proc Natl Acad Sci U S A 2005, 102(38):13526-13531.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , Issue.38 , pp. 13526-13531
    • Xing, Y.1    Lee, C.2
  • 43
    • 32044443159 scopus 로고    scopus 로고
    • Evolution of alternative splicing after gene duplication
    • Su Z, Wang J, Yu J, Huang X, Gu X. Evolution of alternative splicing after gene duplication. Genome Res 2006, 16(2):182-189.
    • (2006) Genome Res , vol.16 , Issue.2 , pp. 182-189
    • Su, Z.1    Wang, J.2    Yu, J.3    Huang, X.4    Gu, X.5
  • 44
    • 84862258664 scopus 로고    scopus 로고
    • Interrogation of alternative splicing events in duplicated genes during evolution
    • Chen TW, Wu TH, Ng WV, Lin WC. Interrogation of alternative splicing events in duplicated genes during evolution. BMC Genomics 2011, 12(Suppl 3):S16.
    • (2011) BMC Genomics , vol.12 , Issue.SUPPL. 3
    • Chen, T.W.1    Wu, T.H.2    Ng, W.V.3    Lin, W.C.4
  • 45
    • 34447123260 scopus 로고    scopus 로고
    • Comparative cross-species alternative splicing in plants
    • Ner-Gaon H, Leviatan N, Rubin E, Fluhr R. Comparative cross-species alternative splicing in plants. Plant Physiol 2007, 144(3):1632-1641.
    • (2007) Plant Physiol , vol.144 , Issue.3 , pp. 1632-1641
    • Ner-Gaon, H.1    Leviatan, N.2    Rubin, E.3    Fluhr, R.4
  • 46
    • 0036273505 scopus 로고    scopus 로고
    • Hybrid origin and parentage of Dendrochilum acuiferum (Orchidaceae) inferred in a phylogenetic context using nuclear and plastid DNA sequence data
    • Barkman TJ, Simpson BB. Hybrid origin and parentage of Dendrochilum acuiferum (Orchidaceae) inferred in a phylogenetic context using nuclear and plastid DNA sequence data. Syst Bot 2002, 27(2):209-220.
    • (2002) Syst Bot , vol.27 , Issue.2 , pp. 209-220
    • Barkman, T.J.1    Simpson, B.B.2
  • 47
    • 3042698705 scopus 로고    scopus 로고
    • Incongruence in Veroniceae (Plantaginaceae): evidence from two plastid and a nuclear ribosomal DNA region
    • Albach DC, Chase MW. Incongruence in Veroniceae (Plantaginaceae): evidence from two plastid and a nuclear ribosomal DNA region. Mol Phylogenet Evol 2004, 32(1):183-197.
    • (2004) Mol Phylogenet Evol , vol.32 , Issue.1 , pp. 183-197
    • Albach, D.C.1    Chase, M.W.2
  • 48
    • 33751014074 scopus 로고    scopus 로고
    • Incongruent plastid and nuclear DNA phylogenies reveal ancient intergeneric hybridization in Pilosella hawkweeds (Hieracium, Cichorieae, Asteraceae)
    • Fehrer J, Gemeinholzer B, Chrtek J, Bräutigam S. Incongruent plastid and nuclear DNA phylogenies reveal ancient intergeneric hybridization in Pilosella hawkweeds (Hieracium, Cichorieae, Asteraceae). Mol Phylogenet Evol 2007, 42(2):347-361.
    • (2007) Mol Phylogenet Evol , vol.42 , Issue.2 , pp. 347-361
    • Fehrer, J.1    Gemeinholzer, B.2    Chrtek, J.3    Bräutigam, S.4
  • 49
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst Bot 1978, 27(4):401-410.
    • (1978) Syst Bot , vol.27 , Issue.4 , pp. 401-410
    • Felsenstein, J.1
  • 50
    • 3042550872 scopus 로고    scopus 로고
    • Genome-scale phylogeny and the detection of systematic biases
    • Phillips MJ, Delsuc F, Penny D. Genome-scale phylogeny and the detection of systematic biases. Mol Biol Evol 2004, 21(7):1455-1458.
    • (2004) Mol Biol Evol , vol.21 , Issue.7 , pp. 1455-1458
    • Phillips, M.J.1    Delsuc, F.2    Penny, D.3
  • 53
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright AJ, Van Dongen S, Ouzounis CA. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res 2002, 30(7):1575-1584.
    • (2002) Nucleic Acids Res , vol.30 , Issue.7 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 55
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21(18):3674-3676.
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 58
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: software package for data analysis in molecular biology and evolution
    • Xia X, Xie Z. DAMBE: software package for data analysis in molecular biology and evolution. J Hered 2001, 92(4):371-373.
    • (2001) J Hered , vol.92 , Issue.4 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 59
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 2002, 30(14):3059-3066.
    • (2002) Nucleic Acids Res , vol.30 , Issue.14 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 61
    • 84861890038 scopus 로고    scopus 로고
    • Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
    • Marquez Y, Brown JW, Simpson C, Barta A, Kalyna M. Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res 2012, 22(6):1184-1195.
    • (2012) Genome Res , vol.22 , Issue.6 , pp. 1184-1195
    • Marquez, Y.1    Brown, J.W.2    Simpson, C.3    Barta, A.4    Kalyna, M.5
  • 62
    • 77951871117 scopus 로고    scopus 로고
    • Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
    • Zhang G, Guo G, Hu X, Zhang Y, Li Q, Li R, Zhuang R, Lu Z, He Z, Fang X. Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res 2010, 20(5):646-654.
    • (2010) Genome Res , vol.20 , Issue.5 , pp. 646-654
    • Zhang, G.1    Guo, G.2    Hu, X.3    Zhang, Y.4    Li, Q.5    Li, R.6    Zhuang, R.7    Lu, Z.8    He, Z.9    Fang, X.10
  • 63
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22(21):2688-2690.
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 64
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML Web servers
    • Stamatakis A, Hoover P, Rougemont J. A rapid bootstrap algorithm for the RAxML Web servers. Syst Bot 2008, 57(5):758-771.
    • (2008) Syst Bot , vol.57 , Issue.5 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.