메뉴 건너뛰기




Volumn 20, Issue 7, 2014, Pages 1068-1077

A central role for the primary microRNA stem in guiding the position and efficiency of Drosha processing of a viral pri-miRNA

Author keywords

DGCR8; Drosha; miRNA; pri miRNA; RNAi; shRNA

Indexed keywords

DOUBLE STRANDED RNA; MICRORNA; MICRORNA 16; PRIMARY MICRORNA; PRIMARY MIRNA 16; PRIMARY MIRNA 30A; RENILLA LUCIFERIN 2 MONOOXYGENASE; SHORT HAIRPIN RNA; SINGLE STRANDED RNA; UNCLASSIFIED DRUG;

EID: 84902650934     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.044537.114     Document Type: Article
Times cited : (36)

References (42)
  • 1
    • 84874086395 scopus 로고    scopus 로고
    • Beyond secondary structure: Primary-sequence determinants license pri-miRNA hairpins for processing
    • Auyeung VC, Ulitsky I, McGeary SE, Bartel DP. 2013. Beyond secondary structure: Primary-sequence determinants license pri-miRNA hairpins for processing. Cell 152: 844-858.
    • (2013) Cell , vol.152 , pp. 844-858
    • Auyeung, V.C.1    Ulitsky, I.2    McGeary, S.E.3    Bartel, D.P.4
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP. 2004. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 4
    • 79955369794 scopus 로고    scopus 로고
    • Insights into Polyomaviridae microRNA function derived from study of the bandicoot papillomatosis carcinomatosisviruses
    • Chen CJ, Kincaid RP, Seo GJ, Bennett MD, Sullivan CS. 2011. Insights into Polyomaviridae microRNA function derived from study of the bandicoot papillomatosis carcinomatosisviruses. J Virol 85: 4487-4500.
    • (2011) J Virol , vol.85 , pp. 4487-4500
    • Chen, C.J.1    Kincaid, R.P.2    Seo, G.J.3    Bennett, M.D.4    Sullivan, C.S.5
  • 5
    • 84884351427 scopus 로고    scopus 로고
    • Divergent microRNA targetomes of closely related circulating strains of a polyomavirus
    • Chen CJ, Cox JE, Kincaid RP, Martinez A, Sullivan CS. 2013. Divergent microRNA targetomes of closely related circulating strains of a polyomavirus. J Virol 87: 11135-11147.
    • (2013) J Virol , vol.87 , pp. 11135-11147
    • Chen, C.J.1    Cox, J.E.2    Kincaid, R.P.3    Martinez, A.4    Sullivan, C.S.5
  • 8
    • 52649112259 scopus 로고    scopus 로고
    • The sequence selectivity of KSRP explains its flexibility in the recognition of the RNA targets
    • García-Mayoral MF, Díaz-Moreno I, Hollingworth D, Ramos A. 2008. The sequence selectivity of KSRP explains its flexibility in the recognition of the RNA targets. Nucleic Acids Res 36: 5290-5296.
    • (2008) Nucleic Acids Res , vol.36 , pp. 5290-5296
    • García-Mayoral, M.F.1    Díaz-Moreno, I.2    Hollingworth, D.3    Ramos, A.4
  • 10
    • 17844364875 scopus 로고    scopus 로고
    • Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. Elegans developmental timing
    • Grishok A, Pasquinelli AE, Conte D, Li N, Parrish S, Ha I, Baillie DL, Fire A, Ruvkun G, Mello CC. 2001. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell 106: 23-34.
    • (2001) Cell , vol.106 , pp. 23-34
    • Grishok, A.1    Pasquinelli, A.E.2    Conte, D.3    Li, N.4    Parrish, S.5    Ha, I.6    Baillie, D.L.7    Fire, A.8    Ruvkun, G.9    Mello, C.C.10
  • 11
    • 10644234841 scopus 로고    scopus 로고
    • The Drosha-DGCR8 complex in primary microRNA processing
    • Han J, Lee Y, Yeom KH, Kim YK, Jin H, Kim VN. 2004. The Drosha-DGCR8 complex in primary microRNA processing. Genes Dev 18: 3016-3027.
    • (2004) Genes Dev , vol.18 , pp. 3016-3027
    • Han, J.1    Lee, Y.2    Yeom, K.H.3    Kim, Y.K.4    Jin, H.5    Kim, V.N.6
  • 13
    • 0035800521 scopus 로고    scopus 로고
    • A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
    • Hutvagner G, McLachlan J, Pasquinelli AE, Balint E, Tuschl T, Zamore PD. 2001. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 293: 834-838.
    • (2001) Science , vol.293 , pp. 834-838
    • Hutvagner, G.1    McLachlan, J.2    Pasquinelli, A.E.3    Balint, E.4    Tuschl, T.5    Zamore, P.D.6
  • 14
    • 0035887005 scopus 로고    scopus 로고
    • Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. Elegans
    • Ketting RF, Fischer SE, Bernstein E, Sijen T, Hannon GJ, Plasterk RH. 2001. Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes Dev 15: 2654-2659.
    • (2001) Genes Dev , vol.15 , pp. 2654-2659
    • Ketting, R.F.1    Fischer, S.E.2    Bernstein, E.3    Sijen, T.4    Hannon, G.J.5    Plasterk, R.H.6
  • 15
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • Khvorova A, Reynolds A, Jayasena SD. 2003. Functional siRNAs and miRNAs exhibit strand bias. Cell 115: 209-216.
    • (2003) Cell , vol.115 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.D.3
  • 16
    • 18344369543 scopus 로고    scopus 로고
    • MicroRNA biogenesis: Coordinated cropping and dicing
    • Kim VN. 2005. MicroRNA biogenesis: coordinated cropping and dicing. Nat Rev Mol Cell Biol 6: 376-385.
    • (2005) Nat Rev Mol Cell Biol , vol.6 , pp. 376-385
    • Kim, V.N.1
  • 18
    • 10344248903 scopus 로고    scopus 로고
    • The human DiGeorge syndrome critical region gene 8 and its D. Melanogaster homolog are required for miRNA biogenesis
    • Landthaler M, Yalcin A, Tuschl T. 2004. The human DiGeorge syndrome critical region gene 8 and its D. melanogaster homolog are required for miRNA biogenesis. Curr Biol 14: 2162-2167.
    • (2004) Curr Biol , vol.14 , pp. 2162-2167
    • Landthaler, M.1    Yalcin, A.2    Tuschl, T.3
  • 21
    • 84890835664 scopus 로고    scopus 로고
    • Lower and upper stem-single-stranded RNA junctions together determine the Drosha cleavage site
    • Ma H, Wu Y, Jang-Gi C, Wu H. 2013. Lower and upper stem-single-stranded RNA junctions together determine the Drosha cleavage site. Proc Natl Acad Sci 110: 20687 -20692.
    • (2013) Proc Natl Acad Sci , vol.110 , pp. 20687-20692
    • Ma, H.1    Wu, Y.2    Jang-Gi, C.3    Wu, H.4
  • 23
    • 34948901976 scopus 로고    scopus 로고
    • Structural determinants of RNA recognition and cleavage by Dicer
    • MacRae IJ, Zhou K, Doudna JA. 2007. Structural determinants of RNA recognition and cleavage by Dicer. Nat Struct Mol Biol 14: 934-940.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 934-940
    • MacRae, I.J.1    Zhou, K.2    Doudna, J.A.3
  • 24
    • 79960049624 scopus 로고    scopus 로고
    • Detection of viral microRNAs by Northern blot analysis
    • McClure LV, Lin YT, Sullivan CS. 2011. Detection of viral microRNAs by Northern blot analysis. Methods Mol Biol 721: 153-171.
    • (2011) Methods Mol Biol , vol.721 , pp. 153-171
    • McClure, L.V.1    Lin, Y.T.2    Sullivan, C.S.3
  • 25
    • 21844477027 scopus 로고    scopus 로고
    • Human microRNA prediction through a probabilistic co-learning model of sequence and structure
    • Nam J, Shin K, Han J, Lee Y, Kim VN. 2005. Human microRNA prediction through a probabilistic co-learning model of sequence and structure. Nucleic Acids Res 33: 3570-3581.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3570-3581
    • Nam, J.1    Shin, K.2    Han, J.3    Lee, Y.4    Kim, V.N.5
  • 26
    • 40449139010 scopus 로고    scopus 로고
    • The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
    • Parisien M, Major F. 2008. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data. Nature 452: 51-55.
    • (2008) Nature , vol.452 , pp. 51-55
    • Parisien, M.1    Major, F.2
  • 29
  • 33
    • 20444446357 scopus 로고    scopus 로고
    • SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells
    • Sullivan CS, Grundhoff AT, Tevethia S, Pipas JM, Ganem D. 2005. SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells. Nature 435: 682-686.
    • (2005) Nature , vol.435 , pp. 682-686
    • Sullivan, C.S.1    Grundhoff, A.T.2    Tevethia, S.3    Pipas, J.M.4    Ganem, D.5
  • 36
    • 0031867449 scopus 로고    scopus 로고
    • PIG-B: A homemade monophasic cocktail for the extraction of RNA
    • Weber K, Bolander ME, Sarkar G. 1998. PIG-B: a homemade monophasic cocktail for the extraction of RNA. Mol Biotechnol 9: 73-77.
    • (1998) Mol Biotechnol , vol.9 , pp. 73-77
    • Weber, K.1    Bolander, M.E.2    Sarkar, G.3
  • 37
    • 23044502585 scopus 로고    scopus 로고
    • Efficient processing of primary microRNA hairpins by Drosha requires flanking nonstructured RNA sequences
    • Zeng Y, Cullen BR. 2005. Efficient processing of primary microRNA hairpins by Drosha requires flanking nonstructured RNA sequences. J Biol Chem 280: 27595-27603.
    • (2005) J Biol Chem , vol.280 , pp. 27595-27603
    • Zeng, Y.1    Cullen, B.R.2
  • 38
    • 12544255565 scopus 로고    scopus 로고
    • Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha
    • Zeng Y, Yi R, Cullen BR. 2005. Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha. EMBO J 24: 138-148.
    • (2005) EMBO J , vol.24 , pp. 138-148
    • Zeng, Y.1    Yi, R.2    Cullen, B.R.3
  • 39
    • 78649870594 scopus 로고    scopus 로고
    • The terminal loop region controls micro-RNA processing by Drosha and Dicer
    • Zhang Z, Zeng Y. 2010. The terminal loop region controls micro-RNA processing by Drosha and Dicer. Nucleic Acids Res 38: 7689-7697.
    • (2010) Nucleic Acids Res , vol.38 , pp. 7689-7697
    • Zhang, Z.1    Zeng, Y.2
  • 40
    • 0036845374 scopus 로고    scopus 로고
    • Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP
    • Zhang H, Kolb FA, Brondani V, Billy E, Filipowicz W. 2002. Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP. EMBO J 21: 5875-5885.
    • (2002) EMBO J , vol.21 , pp. 5875-5885
    • Zhang, H.1    Kolb, F.A.2    Brondani, V.3    Billy, E.4    Filipowicz, W.5
  • 41
    • 3142613181 scopus 로고    scopus 로고
    • Single processing center models for human Dicer and bacterial RNase III
    • Zhang H, Kolb FA, Jaskiewicz L, Westhof E, Filipowicz W. 2004. Single processing center models for human Dicer and bacterial RNase III. Cell 118: 57 -68.
    • (2004) Cell , vol.118 , pp. 57-68
    • Zhang, H.1    Kolb, F.A.2    Jaskiewicz, L.3    Westhof, E.4    Filipowicz, W.5
  • 42
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.