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Volumn 4, Issue 6, 2014, Pages 957-971

Microrna regulation of bovine monocyte inflammatory and metabolic networks in an in Vivo infection model

Author keywords

Complex; Complex genetics; Immunity; Infection; Innate immunity; MicroRNA; Networks; Resistance; RNAseq; Tolerance; Transcriptional

Indexed keywords

BETA ACTIN; CD14 ANTIGEN; CHEMOKINE; INTERFERON; INTERLEUKIN 1 RECEPTOR ASSOCIATED KINASE 1; INTERLEUKIN 12; INTERLEUKIN 12P35; INTERLEUKIN 12P40; INTERLEUKIN 18; INTERLEUKIN 23P19; INTERLEUKIN 27; INTERLEUKIN 6; INTERLEUKIN 8; MACROPHAGE INFLAMMATORY PROTEIN 1ALPHA; MACROPHAGE INFLAMMATORY PROTEIN 1BETA; MACROPHAGE INFLAMMATORY PROTEIN 3ALPHA; MESSENGER RNA; MICRORNA; MICRORNA 182; MICRORNA 200B; MICRORNA 200C; MICRORNA 210; MICRORNA 223; MICRORNA 34A; MICRORNA 375; NUCLEOTIDE BINDING OLIGOMERIZATION DOMAIN LIKE RECEPTOR; STAT1 PROTEIN; STAT3 PROTEIN; TOLL LIKE RECEPTOR; TRANSCRIPTION FACTOR RELA;

EID: 84902499131     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.113.009936     Document Type: Article
Times cited : (50)

References (88)
  • 1
    • 84868569570 scopus 로고    scopus 로고
    • RIGI detects infection with live Listeria by sensing secreted bacterial nucleic acids
    • Abdullah, Z., M. Schlee, S. Roth, M. A. Mraheil, W. Barchet et al. 2012 RIGI detects infection with live Listeria by sensing secreted bacterial nucleic acids. EMBO J. 31: 4153-4164.
    • (2012) EMBO J. , vol.31 , pp. 4153-4164
    • Abdullah, Z.1    Schlee, M.2    Roth, S.3    Mraheil, M.A.4    Barchet, W.5
  • 2
    • 84858973697 scopus 로고    scopus 로고
    • Ajit, S. K., 2012 Circulating microRNAs as biomarkers, therapeutic targets, and signaling molecules. Sensors (Basel Switzerland) 12: 3359-3369.
    • , vol.12 , pp. 3359-3369
  • 3
  • 4
    • 77955504378 scopus 로고    scopus 로고
    • Auer, P. L., and R. W. Doerge, 2010 Statistical design and analysis of RNA sequencing data. Genetics 185: 405-416.
    • , vol.185 , pp. 405-416
  • 5
    • 9744266675 scopus 로고    scopus 로고
    • Innate immune response to intramammary infection with Serratia marcescens and Streptococcus uberis
    • Bannerman, D. D., M. J. Paape, J. P. Goff, K. Kimura, J. D. Lippolis et al. 2004 Innate immune response to intramammary infection with Serratia marcescens and Streptococcus uberis. Vet. Res. 35: 681-700.
    • (2004) Vet. Res. , vol.35 , pp. 681-700
    • Bannerman, D.D.1    Paape, M.J.2    Goff, J.P.3    Kimura, K.4    Lippolis, J.D.5
  • 6
    • 78650373804 scopus 로고    scopus 로고
    • Network medicine: a network-based approach to human disease
    • Barabasi, A. L., N. Gulbahce, and J. Loscalzo, 2011 Network medicine: a network-based approach to human disease. Nat. Rev. Genet. 12: 56-68.
    • (2011) Nat. Rev. Genet , vol.12 , pp. 56-68
  • 7
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Y. Hochberg, 1995 Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B. Stat. Methodol.57: 289-300.
    • (1995) J. R. Stat. Soc. Ser. B. Stat. Methodol. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 8
    • 47949094965 scopus 로고    scopus 로고
    • Bensinger, S. J., and P. Tontonoz, 2008 Integration of metabolism and inflammation by lipid-activated nuclear receptors. Nature 454: 470-477.
    • , vol.454 , pp. 470-477
  • 9
    • 0034530919 scopus 로고    scopus 로고
    • Tumor necrosis factor-alpha and nitrite/nitrate responses during acute mastitis induced by Escherichia coli infection and endotoxin in dairy cows
    • Blum, J. W., H. Dosogne, D. Hoeben, F. Vangroenweghe, H. M. Hammon et al. 2000 Tumor necrosis factor-alpha and nitrite/nitrate responses during acute mastitis induced by Escherichia coli infection and endotoxin in dairy cows. Domest. Anim. Endocrinol. 19: 223-235.
    • (2000) Domest. Anim. Endocrinol. , vol.19 , pp. 223-235
    • Blum, J.W.1    Dosogne, H.2    Hoeben, D.3    Vangroenweghe, F.4    Hammon, H.M.5
  • 10
    • 84874573555 scopus 로고    scopus 로고
    • T cell activation induces proteasomal degradation of Argonaute and rapid remodeling of the microRNA repertoire
    • Bronevetsky, Y., A. V. Villarino, C. J. Eisley, R. Barbeau, A. J. Barczak et al. 2013 T cell activation induces proteasomal degradation of Argonaute and rapid remodeling of the microRNA repertoire. J. Exp. Med. 210: 417-432.
    • (2013) J. Exp. Med. , vol.210 , pp. 417-432
    • Bronevetsky, Y.1    Villarino, A.V.2    Eisley, C.J.3    Barbeau, R.4    Barczak, A.J.5
  • 11
    • 79952049778 scopus 로고    scopus 로고
    • Buitenhuis, B., C. M. Rontved, S. M. Edwards, K. L. Ingvartsen, and P. Sorensen, 2011 In depth analysis of genes and pathways of the mammary gland involved in the pathogenesis of bovine Escherichia colimastitis. BMC Genomics 12: 130.
    • , vol.12 , pp. 130
  • 12
    • 77949481052 scopus 로고    scopus 로고
    • Bullard, J. H., E. Purdom, K. D. Hansen, and S. Dudoit, 2010 Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics 11: 94.
    • , vol.11 , pp. 94
  • 13
    • 0346727524 scopus 로고    scopus 로고
    • Chen, C. Z., L. Li, H. F. Lodish, and D. P. Bartel, 2004 MicroRNAs modulate hematopoietic lineage differentiation. Science 303: 83-86.
    • , vol.303 , pp. 83-86
  • 14
    • 84864190840 scopus 로고    scopus 로고
    • Micro-RNA-195 and -451 regulate the LKB1/AMPK signaling axis by targeting MO25
    • Chen, H., G. M. Untiveros, L. A. McKee, J. Perez, J. Li et al. 2012 Micro-RNA-195 and -451 regulate the LKB1/AMPK signaling axis by targeting MO25. PLoS ONE 7: e41574.
    • (2012) PLoS ONE , vol.7
    • Chen, H.1    Untiveros, G.M.2    McKee, L.A.3    Perez, J.4    Li, J.5
  • 15
    • 77957567010 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs in raw milk during different periods of lactation, commercial fluid, and powdered milk products
    • Chen, X., C. Gao, H. Li, L. Huang, Q. Sun et al. 2010 Identification and characterization of microRNAs in raw milk during different periods of lactation, commercial fluid, and powdered milk products. Cell Res. 20: 1128-1137.
    • (2010) Cell Res. , vol.20 , pp. 1128-1137
    • Chen, X.1    Gao, C.2    Li, H.3    Huang, L.4    Sun, Q.5
  • 16
    • 67749132423 scopus 로고    scopus 로고
    • Chi, S. W., J. B. Zang, A. Mele, and R. B. Darnell, 2009 Argonaute HITSCLIP decodes microRNA-mRNA interaction maps. Nature 460: 479-486.
    • , vol.460 , pp. 479-486
  • 17
    • 78649317368 scopus 로고    scopus 로고
    • Chin, C. Y., D. M. Monack, and S. Nathan, 2010 Genome wide transcriptome profiling of a murine acute melioidosis model reveals new insights into how Burkholderia pseudomallei overcomes host innate immunity. BMC Genomics 11: 672.
    • , vol.11 , pp. 672
  • 18
    • 77951226627 scopus 로고    scopus 로고
    • The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
    • Cock, P. J., C. J. Fields, N. Goto, M. L. Heuer, and P. M. Rice, 2010 The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res. 38: 1767-1771.
    • (2010) Nucleic Acids Res , pp. 1767-1771
    • Cock, P.J.1    Fields, C.J.2    Goto, N.3    Heuer, M.L.4    Rice, P.M.5
  • 20
    • 84886100468 scopus 로고    scopus 로고
    • Circulating miRNAs as sensitive and specific biomarkers for the diagnosis and monitoring of human diseases: promises and challenges
    • De Guire, V., R. Robitaille, N. Tetreault, R. Guerin, C. Menard et al. 2013 Circulating miRNAs as sensitive and specific biomarkers for the diagnosis and monitoring of human diseases: promises and challenges. Clin. Biochem. 46: 846-860.
    • (2013) Clin. Biochem. , vol.46 , pp. 846-860
    • De Guire, V.1    Robitaille, R.2    Tetreault, N.3    Guerin, R.4    Menard, C.5
  • 21
    • 84861919203 scopus 로고    scopus 로고
    • Escherichia coli lipopolysaccharides and Staphylococcus aureus enterotoxin B differentially modulate inflammatory microRNAs in bovine monocytes
    • Dilda, F., G. Gioia, L. Pisani, L. Restelli, C. Lecchi et al. 2011 Escherichia coli lipopolysaccharides and Staphylococcus aureus enterotoxin B differentially modulate inflammatory microRNAs in bovine monocytes. Vet. J. 192: 514-516.
    • (2011) Vet. J. , vol.192 , pp. 514-516
    • Dilda, F.1    Gioia, G.2    Pisani, L.3    Restelli, L.4    Lecchi, C.5
  • 22
    • 84875582826 scopus 로고    scopus 로고
    • RNA sequencing and transcriptomal analysis of human monocyte to macrophage differentiation
    • Dong, C., G. Zhao, M. Zhong, Y. Yue, L. Wu et al. 2013 RNA sequencing and transcriptomal analysis of human monocyte to macrophage differentiation. Gene 519: 279-287.
    • (2013) Gene , vol.519 , pp. 279-287
    • Dong, C.1    Zhao, G.2    Zhong, M.3    Yue, Y.4    Wu, L.5
  • 23
    • 84874300122 scopus 로고    scopus 로고
    • Monitoring herd incidence of intramammary infection in lactating cows using repeated longitudinal somatic cell count measurements
    • Dufour, S., and I. R. Dohoo, 2013 Monitoring herd incidence of intramammary infection in lactating cows using repeated longitudinal somatic cell count measurements. J. Dairy Sci. 96: 1568-1580.
    • (2013) J. Dairy Sci. , pp. 1568-1580
    • Dufour, S.1    Dohoo, I.R.2
  • 24
    • 84862686496 scopus 로고    scopus 로고
    • Macrophage/foam cell is an attribute of inflammation: mechanisms of formation and functional role.
    • Dushkin, M. I., 2012 Macrophage/foam cell is an attribute of inflammation: mechanisms of formation and functional role. Biochemistry. Biokhimiia 77: 327-338.
    • Biochemistry. Biokhimiia , vol.77 , pp. 327-338
    • Dushkin, M.I.1
  • 25
    • 28344438648 scopus 로고    scopus 로고
    • A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis
    • Fazi, F., A. Rosa, A. Fatica, V. Gelmetti, M. L. De Marchis et al. 2005 A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis. Cell 123: 819-831.
    • (2005) Cell , vol.123 , pp. 819-831
    • Fazi, F.1    Rosa, A.2    Fatica, A.3    Gelmetti, V.4    De Marchis, M.L.5
  • 26
    • 84876076699 scopus 로고    scopus 로고
    • The expression of cholesterol metabolism genes in monocytes from HIV-infected subjects suggests intracellular cholesterol accumulation
    • Feeney, E. R., N. McAuley, J. A. O'Halloran, C. Rock, J. Low et al. 2013 The expression of cholesterol metabolism genes in monocytes from HIV-infected subjects suggests intracellular cholesterol accumulation. J. Infect. Dis. 207: 628-637.
    • (2013) J. Infect. Dis. , vol.207 , pp. 628-637
    • Feeney, E.R.1    McAuley, N.2    O'Halloran, J.A.3    Rock, C.4    Low, J.5
  • 28
    • 84861370963 scopus 로고    scopus 로고
    • Garmire, L. X., and S. Subramaniam, 2012 Evaluation of normalization methods in mammalian microRNA-Seq data. RNA 18: 1279-1288.
    • , vol.18 , pp. 1279-1288
  • 29
    • 84873023504 scopus 로고    scopus 로고
    • Sonic hedgehog-dependent induction of microRNA 31 and microRNA 150 regulates Mycobacterium bovis BCG-driven toll-like receptor 2 signaling
    • Ghorpade, D. S., S. Holla, S. V. Kaveri, J. Bayry, S. A. Patil et al. 2013 Sonic hedgehog-dependent induction of microRNA 31 and microRNA 150 regulates Mycobacterium bovis BCG-driven toll-like receptor 2 signaling. Mol. Cell. Biol. 33: 543-556.
    • (2013) Mol. Cell. Biol. , vol.33 , pp. 543-556
    • Ghorpade, D.S.1    Holla, S.2    Kaveri, S.V.3    Bayry, J.4    Patil, S.A.5
  • 30
    • 84857758249 scopus 로고    scopus 로고
    • Control of Mycobacterium tuberculosis growth by activated natural killer cells
    • Guerra, C., K. Johal, D. Morris, S. Moreno, O. Alvarado et al. 2012 Control of Mycobacterium tuberculosis growth by activated natural killer cells. Clin. Exp. Immunol. 168: 142-152.
    • (2012) Clin. Exp. Immunol. , vol.168 , pp. 142-152
    • Guerra, C.1    Johal, K.2    Morris, D.3    Moreno, S.4    Alvarado, O.5
  • 33
    • 0000801240 scopus 로고    scopus 로고
    • Ideker, T., O. Ozier, B. Schwikowski, and A. F. Siegel
    • Ideker, T., O. Ozier, B. Schwikowski, and A. F. Siegel, 2002 Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics 18(Suppl 1): S233-S240.
    • (2002) Bioinformatics , vol.18 , Issue.1 SUPPL.
  • 34
    • 84872177827 scopus 로고    scopus 로고
    • Escherichia coli- and Staphylococcus aureus-induced mastitis differentially modulate transcriptional responses in neighbouring uninfected bovine mammary gland quarters
    • Jensen, K., J. Gunther, R. Talbot, W. Petzl, H. Zerbe et al. 2013 Escherichia coli- and Staphylococcus aureus-induced mastitis differentially modulate transcriptional responses in neighbouring uninfected bovine mammary gland quarters. BMC Genomics 14: 36.
    • (2013) BMC Genomics , vol.14 , pp. 36
    • Jensen, K.1    Gunther, J.2    Talbot, R.3    Petzl, W.4    Zerbe, H.5
  • 35
    • 55249094815 scopus 로고    scopus 로고
    • Jiang, L., P. Sorensen, C. Rontved, L. Vels, and K. L. Ingvartsen, 2008 Gene expression profiling of liver from dairy cows treated intra-mammary with lipopolysaccharide. BMC Genomics 9: 443.
    • , vol.9 , pp. 443
  • 36
    • 70449358909 scopus 로고    scopus 로고
    • Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    • Jin, W., J. R. Grant, P. Stothard, S. S. Moore, and L. L. Guan, 2009 Characterization of bovine miRNAs by sequencing and bioinformatics analysis. BMC Mol. Biol. 10: 90.
    • (2009) BMC Mol. Biol. , vol.10 , pp. 90
    • Jin, W.1    Grant, J.R.2    Stothard, P.3    Moore, S.S.4    Guan, L.L.5
  • 37
    • 63049118068 scopus 로고    scopus 로고
    • Understanding the basics of mastitis
    • Virginia Cooperative Extension Publication No. 404-233. Virginia State University, USA
    • Jones, G. M., and T. L. Bailey 2009 Understanding the basics of mastitis. Virginia Cooperative Extension Publication No. 404-233. Virginia State University, USA, 1-7.
    • (2009) , pp. 1-7
    • Jones, G.M.1    Bailey, T.L.2
  • 39
    • 77957037314 scopus 로고    scopus 로고
    • Kosaka, N., H. Izumi, K. Sekine, and T. Ochiya, 2010 microRNA as a new immune-regulatory agent in breast milk. Silence 1: 7.
    • , vol.1 , pp. 7
  • 40
    • 78651293534 scopus 로고    scopus 로고
    • miRBase: integrating microRNA annotation and deep-sequencing data
    • Kozomara, A., and S. Griffiths-Jones, 2011 miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39: D152-D157.
    • (2011) Nucleic Acids Res. , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 41
    • 84874585154 scopus 로고    scopus 로고
    • Lawless, N., A. B. Foroushani, M. S. McCabe, C. O'Farrelly, and D. J. Lynn, 2013 Next generation sequencing reveals the expression of a unique miRNA profile in response to a Gram-positive bacterial infection. PLoS ONE 8: e57543.
    • , vol.8
  • 42
    • 48449102450 scopus 로고    scopus 로고
    • Hubba: hub objects analyzer-a framework of interactome hubs identification for network biology
    • Lin, C. Y., C. H. Chin, H. H. Wu, S. H. Chen, C. W. Ho et al. 2008 Hubba: hub objects analyzer-a framework of interactome hubs identification for network biology. Nucleic Acids Res. 36: W438-W443.
    • (2008) Nucleic Acids Res. , vol.36
    • Lin, C.Y.1    Chin, C.H.2    Wu, H.H.3    Chen, S.H.4    Ho, C.W.5
  • 43
    • 33746279643 scopus 로고    scopus 로고
    • Neutrophil extracellular trap formation by bovine neutrophils is not inhibited by milk
    • Lippolis, J. D., T. A. Reinhardt, J. P. Goff, and R. L. Horst, 2006 Neutrophil extracellular trap formation by bovine neutrophils is not inhibited by milk. Vet. Immunol. Immunopathol. 113: 248-255.
    • (2006) Vet. Immunol. Immunopathol. , vol.113 , pp. 248-255
    • Lippolis, J.D.1    Reinhardt, T.A.2    Goff, J.P.3    Horst, R.L.4
  • 44
    • 51049113607 scopus 로고    scopus 로고
    • InnateDB: facilitating systems-level analyses of the mammalian innate immune response
    • Lynn, D. J., G. L. Winsor, C. Chan, N. Richard, M. R. Laird et al. 2008 InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Mol. Syst. Biol. 4: 218.
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 218
    • Lynn, D.J.1    Winsor, G.L.2    Chan, C.3    Richard, N.4    Laird, M.R.5
  • 46
    • 82155192914 scopus 로고    scopus 로고
    • Serum concentration and mRNA expression in milk somatic cells of toll-like receptor 2, toll-like receptor 4, and cytokines in dairy cows following intramammary inoculation with Escherichia coli
    • Ma, J. L., Y. H. Zhu, L. Zhang, Z. Y. Zhuge, P. Q. Liu et al. 2011 Serum concentration and mRNA expression in milk somatic cells of toll-like receptor 2, toll-like receptor 4, and cytokines in dairy cows following intramammary inoculation with Escherichia coli. J. Dairy Sci. 94: 5903-5912.
    • (2011) J. Dairy Sci. , vol.94 , pp. 5903-5912
    • Ma, J.L.1    Zhu, Y.H.2    Zhang, L.3    Zhuge, Z.Y.4    Liu, P.Q.5
  • 47
    • 84857568522 scopus 로고    scopus 로고
    • Identification of novel and known miRNAs in deep-sequencing data with miRDeep2
    • Chapter 12, Unit
    • Mackowiak, S. D., 2011 Identification of novel and known miRNAs in deep-sequencing data with miRDeep2. Curr Protoc Bioinformatics Chapter 12, Unit 12 10.
    • (2011) Curr Protoc Bioinformatics , vol.12 , pp. 10
    • Mackowiak, S.D.1
  • 48
    • 84881460276 scopus 로고    scopus 로고
    • How metabolism generates signals during innate immunity and inflammation
    • McGettrick, A. F., and L. A. O'Neill, 2013 How metabolism generates signals during innate immunity and inflammation. J. Biol. Chem. 288: 22893-22898.
    • (2013) J. Biol. Chem. , vol.288 , pp. 22893-22898
    • McGettrick, A.F.1    O'Neill, L.A.2
  • 49
    • 57349177694 scopus 로고    scopus 로고
    • Regulation of the nuclear factor (NF)-kappaB pathway by ISGylation
    • Minakawa, M., T. Sone, T. Takeuchi, and H. Yokosawa, 2008 Regulation of the nuclear factor (NF)-kappaB pathway by ISGylation. Biol. Pharm. Bull. 31: 2223-2227.
    • (2008) Biol. Pharm. Bull. , vol.31 , pp. 2223-2227
    • Minakawa, M.1    Sone, T.2    Takeuchi, T.3    Yokosawa, H.4
  • 50
    • 77951156439 scopus 로고    scopus 로고
    • Escherichia coli infection induces distinct local and systemic transcriptome responses in the mammary gland
    • Mitterhuemer, S., W. Petzl, S. Krebs, D. Mehne, A. Klanner et al. 2010 Escherichia coli infection induces distinct local and systemic transcriptome responses in the mammary gland. BMC Genomics 11: 138.
    • (2010) BMC Genomics , vol.11 , pp. 138
    • Mitterhuemer, S.1    Petzl, W.2    Krebs, S.3    Mehne, D.4    Klanner, A.5
  • 51
    • 84855602156 scopus 로고    scopus 로고
    • Unveiling the mechanisms for decreased glutathione in individuals with HIV infection
    • Morris, D., C. Guerra, C. Donohue, H. Oh, M. Khurasany et al. 2012 Unveiling the mechanisms for decreased glutathione in individuals with HIV infection. Clin. Dev. Immunol. 2012: 734125.
    • (2012) Clin. Dev. Immunol. , vol.2012 , pp. 734125
    • Morris, D.1    Guerra, C.2    Donohue, C.3    Oh, H.4    Khurasany, M.5
  • 53
    • 84861220033 scopus 로고    scopus 로고
    • AMP-activated kinase restricts Rift Valley fever virus infection by inhibiting fatty acid synthesis
    • Moser, T. S., D. Schieffer, and S. Cherry, 2012 AMP-activated kinase restricts Rift Valley fever virus infection by inhibiting fatty acid synthesis. PLoS Pathog. 8: e1002661.
    • (2012) PLoS Pathog. , vol.8
    • Moser, T.S.1    Schieffer, D.2    Cherry, S.3
  • 54
    • 71549117271 scopus 로고    scopus 로고
    • Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling as potential mechanism for the negative relationships between immune response and lipid metabolism
    • Moyes, K. M., J. K. Drackley, D. E. Morin, M. Bionaz, S. L. Rodriguez-Zas et al. 2009 Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling as potential mechanism for the negative relationships between immune response and lipid metabolism. BMC Genomics 10: 542.
    • (2009) BMC Genomics , vol.10 , pp. 542
    • Moyes, K.M.1    Drackley, J.K.2    Morin, D.E.3    Bionaz, M.4    Rodriguez-Zas, S.L.5
  • 55
    • 84864448111 scopus 로고    scopus 로고
    • High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries
    • Mullokandov, G., A. Baccarini, A. Ruzo, A. D. Jayaprakash, N. Tung et al. 2012 High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries. Nat. Methods 9: 840-846.
    • (2012) Nat. Methods , vol.9 , pp. 840-846
    • Mullokandov, G.1    Baccarini, A.2    Ruzo, A.3    Jayaprakash, A.D.4    Tung, N.5
  • 56
    • 75649139134 scopus 로고    scopus 로고
    • Physiological and pathological roles for microRNAs in the immune system
    • O'Connell, R. M., D. S. Rao, A. A. Chaudhuri, and D. Baltimore, 2010 Physiological and pathological roles for microRNAs in the immune system. Nat. Rev. Immunol. 10: 111-122.
    • (2010) Nat. Rev. Immunol. , vol.10 , pp. 111-122
    • O'Connell, R.M.1    Rao, D.S.2    Chaudhuri, A.A.3    Baltimore, D.4
  • 57
    • 84875188784 scopus 로고    scopus 로고
    • Repertoire of Escherichia coli agonists sensed by innate immunity receptors of the bovine udder and mammary epithelial cells
    • Porcherie, A., P. Cunha, A. Trotereau, P. Roussel, F. B. Gilbert et al. 2012 Repertoire of Escherichia coli agonists sensed by innate immunity receptors of the bovine udder and mammary epithelial cells. Vet. Res. 43: 14.
    • (2012) Vet. Res. , vol.43 , pp. 14
    • Porcherie, A.1    Cunha, P.2    Trotereau, A.3    Roussel, P.4    Gilbert, F.B.5
  • 58
    • 26944485547 scopus 로고    scopus 로고
    • Shortterm effects on pro-inflammatory cytokine, lactoferrin and CD14 mRNA expression levels in bovine immunoseparated milk and blood cells treated by LPS
    • Prgomet, C., H. Sarikaya, R. M. Bruckmaier, and M. W. Pfaffl, 2005 Shortterm effects on pro-inflammatory cytokine, lactoferrin and CD14 mRNA expression levels in bovine immunoseparated milk and blood cells treated by LPS. J. Vet. Med. A Physiol. Pathol. Clin. Med. 52: 317-324.
    • (2005) J. Vet. Med. A Physiol. Pathol. Clin. Med. , vol.52 , pp. 317-324
    • Prgomet, C.1    Sarikaya, H.2    Bruckmaier, R.M.3    Pfaffl, M.W.4
  • 59
    • 84875798802 scopus 로고    scopus 로고
    • Reinhardt, T. A., R. E. Sacco, B. J. Nonnecke, and J. D. Lippolis, 2013 Bovine milk proteome: quantitative changes in normal milk exosomes, milk fat globule membranes and whey proteomes resulting from Staphylococcus aureus mastitis. J. Proteomics 82: 141-154.
    • , vol.82 , pp. 141-154
  • 60
    • 79953731500 scopus 로고    scopus 로고
    • Distribution of virulence-associated genes in Streptococcus uberis isolated from bovine mastitis
    • Reinoso, E. B., M. C. Lasagno, S. A. Dieser, and L. M. Odierno, 2011 Distribution of virulence-associated genes in Streptococcus uberis isolated from bovine mastitis. FEMS Microbiol. Lett. 318: 183-188.
    • (2011) FEMS Microbiol. Lett. , vol.318 , pp. 183-188
    • Reinoso, E.B.1    Lasagno, M.C.2    Dieser, S.A.3    Odierno, L.M.4
  • 61
    • 78650306858 scopus 로고    scopus 로고
    • Mastitis associated transcriptomic disruptions in cattle
    • Rinaldi, M., R. W. Li, and A. V. Capuco, 2010 Mastitis associated transcriptomic disruptions in cattle. Vet. Immunol. Immunopathol. 138: 267-279.
    • (2010) Vet. Immunol. Immunopathol. , vol.138 , pp. 267-279
    • Rinaldi, M.1    Li, R.W.2    Capuco, A.V.3
  • 62
    • 75249087100 scopus 로고    scopus 로고
    • Robinson, M. D., D. J. McCarthy, and G. K. Smyth, 2010 edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
    • , vol.26 , pp. 139-140
  • 63
    • 84872172471 scopus 로고    scopus 로고
    • Adenosine stimulates the migration of human endothelial progenitor cells Role of CXCR4 and microRNA-150
    • Rolland-Turner, M., E. Goretti, M. Bousquenaud, F. Leonard, C. Nicolas et al. 2013 Adenosine stimulates the migration of human endothelial progenitor cells. Role of CXCR4 and microRNA-150. PLoS ONE 8: e54135.
    • (2013) PLoS ONE , vol.8
    • Rolland-Turner, M.1    Goretti, E.2    Bousquenaud, M.3    Leonard, F.4    Nicolas, C.5
  • 65
    • 0033552883 scopus 로고    scopus 로고
    • Atherosclerosis an inflammatory disease
    • Ross, R., 1999 Atherosclerosis an inflammatory disease. N. Engl. J. Med. 340: 115-126.
    • (1999) N. Engl. J. Med. , vol.340 , pp. 115-126
    • Ross, R.1
  • 66
    • 84870619467 scopus 로고    scopus 로고
    • miR-155 targets histone deacetylase 4 (HDAC4) and impairs transcriptional activity of B-cell lymphoma 6 (BCL6) in the Emu-miR-155 transgenic mouse model
    • Sandhu, S. K., S. Volinia, S. Costinean, M. Galasso, R. Neinast et al. 2012 miR-155 targets histone deacetylase 4 (HDAC4) and impairs transcriptional activity of B-cell lymphoma 6 (BCL6) in the Emu-miR-155 transgenic mouse model. Proc. Natl. Acad. Sci. USA 109: 20047-20052.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 20047-20052
    • Sandhu, S.K.1    Volinia, S.2    Costinean, S.3    Galasso, M.4    Neinast, R.5
  • 67
    • 37749031255 scopus 로고    scopus 로고
    • Schuster, S. C., 2008 Next-generation sequencing transforms today's biology. Nat. Methods 5: 16-18.
    • , vol.5 , pp. 16-18
  • 68
    • 73249123069 scopus 로고    scopus 로고
    • Mechanisms of human insulin resistance and thiazolidinedionemediated insulin sensitization
    • Sears, D. D., G. Hsiao, A. Hsiao, J. G. Yu, C. H. Courtney et al. 2009 Mechanisms of human insulin resistance and thiazolidinedionemediated insulin sensitization. Proc. Natl. Acad. Sci. USA 106: 18745-18750.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 18745-18750
    • Sears, D.D.1    Hsiao, G.2    Hsiao, A.3    Yu, J.G.4    Courtney, C.H.5
  • 70
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • Shannon, P., A. Markiel, O. Ozier, N. S. Baliga, J. T. Wang et al. 2003 Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13: 2498-2504.
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5
  • 71
    • 79956353001 scopus 로고    scopus 로고
    • Integrated microRNA-mRNA-analysis of human monocyte derived macrophages upon Mycobacterium avium subsp hominissuis infection
    • Sharbati, J., A. Lewin, B. Kutz-Lohroff, E. Kamal, R. Einspanier et al. 2011 Integrated microRNA-mRNA-analysis of human monocyte derived macrophages upon Mycobacterium avium subsp. hominissuis infection. PLoS ONE 6: e20258.
    • (2011) PLoS ONE , vol.6
    • Sharbati, J.1    Lewin, A.2    Kutz-Lohroff, B.3    Kamal, E.4    Einspanier, R.5
  • 72
    • 80355146868 scopus 로고    scopus 로고
    • Monocyte recruitment during infection and inflammation
    • Shi, C., and E. G. Pamer, 2011 Monocyte recruitment during infection and inflammation. Nat. Rev. Immunol. 11: 762-774.
    • (2011) Nat. Rev. Immunol. , vol.11 , pp. 762-774
    • Shi, C.1    Pamer, E.G.2
  • 73
    • 58349119593 scopus 로고    scopus 로고
    • Transcriptome profiling of Streptococcus uberis-induced mastitis reveals fundamental differences between immune gene expression in the mammary gland and in a primary cell culture model
    • Swanson, K. M., K. Stelwagen, J. Dobson, H. V. Henderson, S. R. Davis et al. 2009 Transcriptome profiling of Streptococcus uberis-induced mastitis reveals fundamental differences between immune gene expression in the mammary gland and in a primary cell culture model. J. Dairy Sci. 92: 117-129.
    • (2009) J. Dairy Sci. , vol.92 , pp. 117-129
    • Swanson, K.M.1    Stelwagen, K.2    Dobson, J.3    Henderson, H.V.4    Davis, S.R.5
  • 74
    • 33747608638 scopus 로고    scopus 로고
    • Taganov, K. D., M. P. Boldin, K. J. Chang, and D. Baltimore, 2006 NFkappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. Proc. Natl. Acad. Sci. USA 103: 12481-12486.
    • , vol.103 , pp. 12481-12486
  • 76
    • 80055061481 scopus 로고    scopus 로고
    • Tano, N., H. W. Kim, and M. Ashraf, 2011 microRNA-150 regulates mobilization and migration of bone marrow-derived mononuclear cells by targeting Cxcr4. PLoS ONE 6: e23114.
    • , vol.6
  • 77
    • 65449136284 scopus 로고    scopus 로고
    • Trapnell, C., L. Pachter, and S. L. Salzberg, 2009 TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
    • , vol.25 , pp. 1105-1111
  • 78
    • 77954270706 scopus 로고    scopus 로고
    • Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood
    • Vaz, C., H. M. Ahmad, P. Sharma, R. Gupta, L. Kumar et al. 2010 Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. BMC Genomics 11: 288.
    • (2010) BMC Genomics , vol.11 , pp. 288
    • Vaz, C.1    Ahmad, H.M.2    Sharma, P.3    Gupta, R.4    Kumar, L.5
  • 81
    • 62749122218 scopus 로고    scopus 로고
    • Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis
    • Ward, P. N., M. T. Holden, J. A. Leigh, N. Lennard, A. Bignell et al. 2009 Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis. BMC Genomics 10: 54.
    • (2009) BMC Genomics , vol.10 , pp. 54
    • Ward, P.N.1    Holden, M.T.2    Leigh, J.A.3    Lennard, N.4    Bignell, A.5
  • 82
    • 0032201083 scopus 로고    scopus 로고
    • Key health issues for dairy cattle-new and old
    • Wells, S. J., S. L. Ott, and A. H. Seitzinger, 1998 Key health issues for dairy cattle-new and old. J. Dairy Sci. 81: 3029-3035.
    • (1998) J. Dairy Sci. , vol.81 , pp. 3029-3035
    • Wells, S.J.1    Ott, S.L.2    Seitzinger, A.H.3
  • 83
    • 79952189185 scopus 로고    scopus 로고
    • Experimental Staphylococcus aureus infection of the mammary gland induces region-specific changes in innate immune gene expression
    • Whelehan, C. J., K. G. Meade, P. D. Eckersall, F. J. Young, and C. O'Farrelly, 2011 Experimental Staphylococcus aureus infection of the mammary gland induces region-specific changes in innate immune gene expression. Vet. Immunol. Immunopathol. 140: 181-189.
    • (2011) Vet. Immunol. Immunopathol. , vol.140 , pp. 181-189
    • Whelehan, C.J.1    Meade, K.G.2    Eckersall, P.D.3    Young, F.J.4    O'Farrelly, C.5
  • 84
    • 70450265680 scopus 로고    scopus 로고
    • Cloning and identification of microRNAs in bovine alveolar macrophages
    • Xu, G., Y. Zhang, H. Jia, J. Li, X. Liu et al. 2009 Cloning and identification of microRNAs in bovine alveolar macrophages. Mol. Cell. Biochem. 332: 9-16.
    • (2009) Mol. Cell. Biochem. , vol.332 , pp. 9-16
    • Xu, G.1    Zhang, Y.2    Jia, H.3    Li, J.4    Liu, X.5
  • 85
    • 51649115553 scopus 로고    scopus 로고
    • Yamakuchi, M., M. Ferlito, and C. J. Lowenstein, 2008 miR-34a repression of SIRT1 regulates apoptosis. Proc. Natl. Acad. Sci. USA 105: 13421-13426.
    • , vol.105 , pp. 13421-13426
  • 86
    • 77953212372 scopus 로고    scopus 로고
    • Gene ontology analysis for RNA-seq: accounting for selection bias
    • Young, M. D., M. J. Wakefield, G. K. Smyth, and A. Oshlack, 2010 Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol. 11: R14.
    • (2010) Genome Biol. , vol.11
    • Young, M.D.1    Wakefield, M.J.2    Smyth, G.K.3    Oshlack, A.4
  • 87
    • 34247622363 scopus 로고    scopus 로고
    • The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
    • Yu, H., P. M. Kim, E. Sprecher, V. Trifonov, and M. Gerstein, 2007 The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLOS Comput. Biol. 3: e59.
    • (2007) PLOS Comput. Biol. , vol.3
    • Yu, H.1    Kim, P.M.2    Sprecher, E.3    Trifonov, V.4    Gerstein, M.5


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