-
1
-
-
84868569570
-
RIGI detects infection with live Listeria by sensing secreted bacterial nucleic acids
-
Abdullah, Z., M. Schlee, S. Roth, M. A. Mraheil, W. Barchet et al. 2012 RIGI detects infection with live Listeria by sensing secreted bacterial nucleic acids. EMBO J. 31: 4153-4164.
-
(2012)
EMBO J.
, vol.31
, pp. 4153-4164
-
-
Abdullah, Z.1
Schlee, M.2
Roth, S.3
Mraheil, M.A.4
Barchet, W.5
-
2
-
-
84858973697
-
-
Ajit, S. K., 2012 Circulating microRNAs as biomarkers, therapeutic targets, and signaling molecules. Sensors (Basel Switzerland) 12: 3359-3369.
-
, vol.12
, pp. 3359-3369
-
-
-
3
-
-
80055065839
-
Hepatitis C virus reveals a novel early control in acute immune response
-
Arnaud, N., S. Dabo, D. Akazawa, M. Fukasawa, F. Shinkai-Ouchi et al. 2011 Hepatitis C virus reveals a novel early control in acute immune response. PLoS Pathog. 7: e1002289.
-
(2011)
PLoS Pathog.
, vol.7
-
-
Arnaud, N.1
Dabo, S.2
Akazawa, D.3
Fukasawa, M.4
Shinkai-Ouchi, F.5
-
4
-
-
77955504378
-
-
Auer, P. L., and R. W. Doerge, 2010 Statistical design and analysis of RNA sequencing data. Genetics 185: 405-416.
-
, vol.185
, pp. 405-416
-
-
-
5
-
-
9744266675
-
Innate immune response to intramammary infection with Serratia marcescens and Streptococcus uberis
-
Bannerman, D. D., M. J. Paape, J. P. Goff, K. Kimura, J. D. Lippolis et al. 2004 Innate immune response to intramammary infection with Serratia marcescens and Streptococcus uberis. Vet. Res. 35: 681-700.
-
(2004)
Vet. Res.
, vol.35
, pp. 681-700
-
-
Bannerman, D.D.1
Paape, M.J.2
Goff, J.P.3
Kimura, K.4
Lippolis, J.D.5
-
6
-
-
78650373804
-
Network medicine: a network-based approach to human disease
-
Barabasi, A. L., N. Gulbahce, and J. Loscalzo, 2011 Network medicine: a network-based approach to human disease. Nat. Rev. Genet. 12: 56-68.
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 56-68
-
-
-
7
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y., and Y. Hochberg, 1995 Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B. Stat. Methodol.57: 289-300.
-
(1995)
J. R. Stat. Soc. Ser. B. Stat. Methodol.
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
8
-
-
47949094965
-
-
Bensinger, S. J., and P. Tontonoz, 2008 Integration of metabolism and inflammation by lipid-activated nuclear receptors. Nature 454: 470-477.
-
, vol.454
, pp. 470-477
-
-
-
9
-
-
0034530919
-
Tumor necrosis factor-alpha and nitrite/nitrate responses during acute mastitis induced by Escherichia coli infection and endotoxin in dairy cows
-
Blum, J. W., H. Dosogne, D. Hoeben, F. Vangroenweghe, H. M. Hammon et al. 2000 Tumor necrosis factor-alpha and nitrite/nitrate responses during acute mastitis induced by Escherichia coli infection and endotoxin in dairy cows. Domest. Anim. Endocrinol. 19: 223-235.
-
(2000)
Domest. Anim. Endocrinol.
, vol.19
, pp. 223-235
-
-
Blum, J.W.1
Dosogne, H.2
Hoeben, D.3
Vangroenweghe, F.4
Hammon, H.M.5
-
10
-
-
84874573555
-
T cell activation induces proteasomal degradation of Argonaute and rapid remodeling of the microRNA repertoire
-
Bronevetsky, Y., A. V. Villarino, C. J. Eisley, R. Barbeau, A. J. Barczak et al. 2013 T cell activation induces proteasomal degradation of Argonaute and rapid remodeling of the microRNA repertoire. J. Exp. Med. 210: 417-432.
-
(2013)
J. Exp. Med.
, vol.210
, pp. 417-432
-
-
Bronevetsky, Y.1
Villarino, A.V.2
Eisley, C.J.3
Barbeau, R.4
Barczak, A.J.5
-
11
-
-
79952049778
-
-
Buitenhuis, B., C. M. Rontved, S. M. Edwards, K. L. Ingvartsen, and P. Sorensen, 2011 In depth analysis of genes and pathways of the mammary gland involved in the pathogenesis of bovine Escherichia colimastitis. BMC Genomics 12: 130.
-
, vol.12
, pp. 130
-
-
-
12
-
-
77949481052
-
-
Bullard, J. H., E. Purdom, K. D. Hansen, and S. Dudoit, 2010 Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics 11: 94.
-
, vol.11
, pp. 94
-
-
-
13
-
-
0346727524
-
-
Chen, C. Z., L. Li, H. F. Lodish, and D. P. Bartel, 2004 MicroRNAs modulate hematopoietic lineage differentiation. Science 303: 83-86.
-
, vol.303
, pp. 83-86
-
-
-
14
-
-
84864190840
-
Micro-RNA-195 and -451 regulate the LKB1/AMPK signaling axis by targeting MO25
-
Chen, H., G. M. Untiveros, L. A. McKee, J. Perez, J. Li et al. 2012 Micro-RNA-195 and -451 regulate the LKB1/AMPK signaling axis by targeting MO25. PLoS ONE 7: e41574.
-
(2012)
PLoS ONE
, vol.7
-
-
Chen, H.1
Untiveros, G.M.2
McKee, L.A.3
Perez, J.4
Li, J.5
-
15
-
-
77957567010
-
Identification and characterization of microRNAs in raw milk during different periods of lactation, commercial fluid, and powdered milk products
-
Chen, X., C. Gao, H. Li, L. Huang, Q. Sun et al. 2010 Identification and characterization of microRNAs in raw milk during different periods of lactation, commercial fluid, and powdered milk products. Cell Res. 20: 1128-1137.
-
(2010)
Cell Res.
, vol.20
, pp. 1128-1137
-
-
Chen, X.1
Gao, C.2
Li, H.3
Huang, L.4
Sun, Q.5
-
16
-
-
67749132423
-
-
Chi, S. W., J. B. Zang, A. Mele, and R. B. Darnell, 2009 Argonaute HITSCLIP decodes microRNA-mRNA interaction maps. Nature 460: 479-486.
-
, vol.460
, pp. 479-486
-
-
-
17
-
-
78649317368
-
-
Chin, C. Y., D. M. Monack, and S. Nathan, 2010 Genome wide transcriptome profiling of a murine acute melioidosis model reveals new insights into how Burkholderia pseudomallei overcomes host innate immunity. BMC Genomics 11: 672.
-
, vol.11
, pp. 672
-
-
-
18
-
-
77951226627
-
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
-
Cock, P. J., C. J. Fields, N. Goto, M. L. Heuer, and P. M. Rice, 2010 The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res. 38: 1767-1771.
-
(2010)
Nucleic Acids Res
, pp. 1767-1771
-
-
Cock, P.J.1
Fields, C.J.2
Goto, N.3
Heuer, M.L.4
Rice, P.M.5
-
19
-
-
34248178219
-
Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
-
Coutinho, L. L., L. K. Matukumalli, T. S. Sonstegard, C. P. Van Tassell, L. C.Gasbarre et al. 2007 Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues. Physiol. Genomics 29: 35-43.
-
(2007)
Physiol. Genomics
, vol.29
, pp. 35-43
-
-
Coutinho, L.L.1
Matukumalli, L.K.2
Sonstegard, T.S.3
Van Tassell, C.P.4
Gasbarre, L.C.5
-
20
-
-
84886100468
-
Circulating miRNAs as sensitive and specific biomarkers for the diagnosis and monitoring of human diseases: promises and challenges
-
De Guire, V., R. Robitaille, N. Tetreault, R. Guerin, C. Menard et al. 2013 Circulating miRNAs as sensitive and specific biomarkers for the diagnosis and monitoring of human diseases: promises and challenges. Clin. Biochem. 46: 846-860.
-
(2013)
Clin. Biochem.
, vol.46
, pp. 846-860
-
-
De Guire, V.1
Robitaille, R.2
Tetreault, N.3
Guerin, R.4
Menard, C.5
-
21
-
-
84861919203
-
Escherichia coli lipopolysaccharides and Staphylococcus aureus enterotoxin B differentially modulate inflammatory microRNAs in bovine monocytes
-
Dilda, F., G. Gioia, L. Pisani, L. Restelli, C. Lecchi et al. 2011 Escherichia coli lipopolysaccharides and Staphylococcus aureus enterotoxin B differentially modulate inflammatory microRNAs in bovine monocytes. Vet. J. 192: 514-516.
-
(2011)
Vet. J.
, vol.192
, pp. 514-516
-
-
Dilda, F.1
Gioia, G.2
Pisani, L.3
Restelli, L.4
Lecchi, C.5
-
22
-
-
84875582826
-
RNA sequencing and transcriptomal analysis of human monocyte to macrophage differentiation
-
Dong, C., G. Zhao, M. Zhong, Y. Yue, L. Wu et al. 2013 RNA sequencing and transcriptomal analysis of human monocyte to macrophage differentiation. Gene 519: 279-287.
-
(2013)
Gene
, vol.519
, pp. 279-287
-
-
Dong, C.1
Zhao, G.2
Zhong, M.3
Yue, Y.4
Wu, L.5
-
23
-
-
84874300122
-
Monitoring herd incidence of intramammary infection in lactating cows using repeated longitudinal somatic cell count measurements
-
Dufour, S., and I. R. Dohoo, 2013 Monitoring herd incidence of intramammary infection in lactating cows using repeated longitudinal somatic cell count measurements. J. Dairy Sci. 96: 1568-1580.
-
(2013)
J. Dairy Sci.
, pp. 1568-1580
-
-
Dufour, S.1
Dohoo, I.R.2
-
24
-
-
84862686496
-
Macrophage/foam cell is an attribute of inflammation: mechanisms of formation and functional role.
-
Dushkin, M. I., 2012 Macrophage/foam cell is an attribute of inflammation: mechanisms of formation and functional role. Biochemistry. Biokhimiia 77: 327-338.
-
Biochemistry. Biokhimiia
, vol.77
, pp. 327-338
-
-
Dushkin, M.I.1
-
25
-
-
28344438648
-
A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis
-
Fazi, F., A. Rosa, A. Fatica, V. Gelmetti, M. L. De Marchis et al. 2005 A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis. Cell 123: 819-831.
-
(2005)
Cell
, vol.123
, pp. 819-831
-
-
Fazi, F.1
Rosa, A.2
Fatica, A.3
Gelmetti, V.4
De Marchis, M.L.5
-
26
-
-
84876076699
-
The expression of cholesterol metabolism genes in monocytes from HIV-infected subjects suggests intracellular cholesterol accumulation
-
Feeney, E. R., N. McAuley, J. A. O'Halloran, C. Rock, J. Low et al. 2013 The expression of cholesterol metabolism genes in monocytes from HIV-infected subjects suggests intracellular cholesterol accumulation. J. Infect. Dis. 207: 628-637.
-
(2013)
J. Infect. Dis.
, vol.207
, pp. 628-637
-
-
Feeney, E.R.1
McAuley, N.2
O'Halloran, J.A.3
Rock, C.4
Low, J.5
-
27
-
-
84858221706
-
Ensembl 2012
-
Flicek, P., M. R. Amode, D. Barrell, K. Beal, S. Brent et al. 2012 Ensembl 2012. Nucleic Acids Res. 40: D84-D90.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
-
28
-
-
84861370963
-
-
Garmire, L. X., and S. Subramaniam, 2012 Evaluation of normalization methods in mammalian microRNA-Seq data. RNA 18: 1279-1288.
-
, vol.18
, pp. 1279-1288
-
-
-
29
-
-
84873023504
-
Sonic hedgehog-dependent induction of microRNA 31 and microRNA 150 regulates Mycobacterium bovis BCG-driven toll-like receptor 2 signaling
-
Ghorpade, D. S., S. Holla, S. V. Kaveri, J. Bayry, S. A. Patil et al. 2013 Sonic hedgehog-dependent induction of microRNA 31 and microRNA 150 regulates Mycobacterium bovis BCG-driven toll-like receptor 2 signaling. Mol. Cell. Biol. 33: 543-556.
-
(2013)
Mol. Cell. Biol.
, vol.33
, pp. 543-556
-
-
Ghorpade, D.S.1
Holla, S.2
Kaveri, S.V.3
Bayry, J.4
Patil, S.A.5
-
30
-
-
84857758249
-
Control of Mycobacterium tuberculosis growth by activated natural killer cells
-
Guerra, C., K. Johal, D. Morris, S. Moreno, O. Alvarado et al. 2012 Control of Mycobacterium tuberculosis growth by activated natural killer cells. Clin. Exp. Immunol. 168: 142-152.
-
(2012)
Clin. Exp. Immunol.
, vol.168
, pp. 142-152
-
-
Guerra, C.1
Johal, K.2
Morris, D.3
Moreno, S.4
Alvarado, O.5
-
31
-
-
77952745080
-
Isolation of bovine milk-derived microvesicles carrying mRNAs and microRNAs
-
Hata, T., K. Murakami, H. Nakatani, Y. Yamamoto, T. Matsuda et al. 2010 Isolation of bovine milk-derived microvesicles carrying mRNAs and microRNAs. Biochem. Biophys. Res. Commun. 396: 528-533.
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.396
, pp. 528-533
-
-
Hata, T.1
Murakami, K.2
Nakatani, H.3
Yamamoto, Y.4
Matsuda, T.5
-
32
-
-
58149185123
-
Ensembl 2009
-
Hubbard, T. J., B. L. Aken, S. Ayling, B. Ballester, K. Beal et al. 2009 Ensembl 2009. Nucleic Acids Res. 37: D690-D697.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Hubbard, T.J.1
Aken, B.L.2
Ayling, S.3
Ballester, B.4
Beal, K.5
-
33
-
-
0000801240
-
Ideker, T., O. Ozier, B. Schwikowski, and A. F. Siegel
-
Ideker, T., O. Ozier, B. Schwikowski, and A. F. Siegel, 2002 Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics 18(Suppl 1): S233-S240.
-
(2002)
Bioinformatics
, vol.18
, Issue.1 SUPPL.
-
-
-
34
-
-
84872177827
-
Escherichia coli- and Staphylococcus aureus-induced mastitis differentially modulate transcriptional responses in neighbouring uninfected bovine mammary gland quarters
-
Jensen, K., J. Gunther, R. Talbot, W. Petzl, H. Zerbe et al. 2013 Escherichia coli- and Staphylococcus aureus-induced mastitis differentially modulate transcriptional responses in neighbouring uninfected bovine mammary gland quarters. BMC Genomics 14: 36.
-
(2013)
BMC Genomics
, vol.14
, pp. 36
-
-
Jensen, K.1
Gunther, J.2
Talbot, R.3
Petzl, W.4
Zerbe, H.5
-
35
-
-
55249094815
-
-
Jiang, L., P. Sorensen, C. Rontved, L. Vels, and K. L. Ingvartsen, 2008 Gene expression profiling of liver from dairy cows treated intra-mammary with lipopolysaccharide. BMC Genomics 9: 443.
-
, vol.9
, pp. 443
-
-
-
36
-
-
70449358909
-
Characterization of bovine miRNAs by sequencing and bioinformatics analysis
-
Jin, W., J. R. Grant, P. Stothard, S. S. Moore, and L. L. Guan, 2009 Characterization of bovine miRNAs by sequencing and bioinformatics analysis. BMC Mol. Biol. 10: 90.
-
(2009)
BMC Mol. Biol.
, vol.10
, pp. 90
-
-
Jin, W.1
Grant, J.R.2
Stothard, P.3
Moore, S.S.4
Guan, L.L.5
-
37
-
-
63049118068
-
Understanding the basics of mastitis
-
Virginia Cooperative Extension Publication No. 404-233. Virginia State University, USA
-
Jones, G. M., and T. L. Bailey 2009 Understanding the basics of mastitis. Virginia Cooperative Extension Publication No. 404-233. Virginia State University, USA, 1-7.
-
(2009)
, pp. 1-7
-
-
Jones, G.M.1
Bailey, T.L.2
-
38
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa, M., M. Araki, S. Goto, M. Hattori, M. Hirakawa et al. 2007 KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36: D480-D484.
-
(2007)
Nucleic Acids Res.
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
-
39
-
-
77957037314
-
-
Kosaka, N., H. Izumi, K. Sekine, and T. Ochiya, 2010 microRNA as a new immune-regulatory agent in breast milk. Silence 1: 7.
-
, vol.1
, pp. 7
-
-
-
40
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara, A., and S. Griffiths-Jones, 2011 miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39: D152-D157.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
41
-
-
84874585154
-
-
Lawless, N., A. B. Foroushani, M. S. McCabe, C. O'Farrelly, and D. J. Lynn, 2013 Next generation sequencing reveals the expression of a unique miRNA profile in response to a Gram-positive bacterial infection. PLoS ONE 8: e57543.
-
, vol.8
-
-
-
42
-
-
48449102450
-
Hubba: hub objects analyzer-a framework of interactome hubs identification for network biology
-
Lin, C. Y., C. H. Chin, H. H. Wu, S. H. Chen, C. W. Ho et al. 2008 Hubba: hub objects analyzer-a framework of interactome hubs identification for network biology. Nucleic Acids Res. 36: W438-W443.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Lin, C.Y.1
Chin, C.H.2
Wu, H.H.3
Chen, S.H.4
Ho, C.W.5
-
43
-
-
33746279643
-
Neutrophil extracellular trap formation by bovine neutrophils is not inhibited by milk
-
Lippolis, J. D., T. A. Reinhardt, J. P. Goff, and R. L. Horst, 2006 Neutrophil extracellular trap formation by bovine neutrophils is not inhibited by milk. Vet. Immunol. Immunopathol. 113: 248-255.
-
(2006)
Vet. Immunol. Immunopathol.
, vol.113
, pp. 248-255
-
-
Lippolis, J.D.1
Reinhardt, T.A.2
Goff, J.P.3
Horst, R.L.4
-
44
-
-
51049113607
-
InnateDB: facilitating systems-level analyses of the mammalian innate immune response
-
Lynn, D. J., G. L. Winsor, C. Chan, N. Richard, M. R. Laird et al. 2008 InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Mol. Syst. Biol. 4: 218.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 218
-
-
Lynn, D.J.1
Winsor, G.L.2
Chan, C.3
Richard, N.4
Laird, M.R.5
-
45
-
-
77955688695
-
Curating the innate immunity interactome
-
Lynn, D. J., C. Chan, M. Naseer, M. Yau, R. Lo et al. 2010 Curating the innate immunity interactome. BMC Syst. Biol. 4: 117.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 117
-
-
Lynn, D.J.1
Chan, C.2
Naseer, M.3
Yau, M.4
Lo, R.5
-
46
-
-
82155192914
-
Serum concentration and mRNA expression in milk somatic cells of toll-like receptor 2, toll-like receptor 4, and cytokines in dairy cows following intramammary inoculation with Escherichia coli
-
Ma, J. L., Y. H. Zhu, L. Zhang, Z. Y. Zhuge, P. Q. Liu et al. 2011 Serum concentration and mRNA expression in milk somatic cells of toll-like receptor 2, toll-like receptor 4, and cytokines in dairy cows following intramammary inoculation with Escherichia coli. J. Dairy Sci. 94: 5903-5912.
-
(2011)
J. Dairy Sci.
, vol.94
, pp. 5903-5912
-
-
Ma, J.L.1
Zhu, Y.H.2
Zhang, L.3
Zhuge, Z.Y.4
Liu, P.Q.5
-
47
-
-
84857568522
-
Identification of novel and known miRNAs in deep-sequencing data with miRDeep2
-
Chapter 12, Unit
-
Mackowiak, S. D., 2011 Identification of novel and known miRNAs in deep-sequencing data with miRDeep2. Curr Protoc Bioinformatics Chapter 12, Unit 12 10.
-
(2011)
Curr Protoc Bioinformatics
, vol.12
, pp. 10
-
-
Mackowiak, S.D.1
-
48
-
-
84881460276
-
How metabolism generates signals during innate immunity and inflammation
-
McGettrick, A. F., and L. A. O'Neill, 2013 How metabolism generates signals during innate immunity and inflammation. J. Biol. Chem. 288: 22893-22898.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 22893-22898
-
-
McGettrick, A.F.1
O'Neill, L.A.2
-
49
-
-
57349177694
-
Regulation of the nuclear factor (NF)-kappaB pathway by ISGylation
-
Minakawa, M., T. Sone, T. Takeuchi, and H. Yokosawa, 2008 Regulation of the nuclear factor (NF)-kappaB pathway by ISGylation. Biol. Pharm. Bull. 31: 2223-2227.
-
(2008)
Biol. Pharm. Bull.
, vol.31
, pp. 2223-2227
-
-
Minakawa, M.1
Sone, T.2
Takeuchi, T.3
Yokosawa, H.4
-
50
-
-
77951156439
-
Escherichia coli infection induces distinct local and systemic transcriptome responses in the mammary gland
-
Mitterhuemer, S., W. Petzl, S. Krebs, D. Mehne, A. Klanner et al. 2010 Escherichia coli infection induces distinct local and systemic transcriptome responses in the mammary gland. BMC Genomics 11: 138.
-
(2010)
BMC Genomics
, vol.11
, pp. 138
-
-
Mitterhuemer, S.1
Petzl, W.2
Krebs, S.3
Mehne, D.4
Klanner, A.5
-
51
-
-
84855602156
-
Unveiling the mechanisms for decreased glutathione in individuals with HIV infection
-
Morris, D., C. Guerra, C. Donohue, H. Oh, M. Khurasany et al. 2012 Unveiling the mechanisms for decreased glutathione in individuals with HIV infection. Clin. Dev. Immunol. 2012: 734125.
-
(2012)
Clin. Dev. Immunol.
, vol.2012
, pp. 734125
-
-
Morris, D.1
Guerra, C.2
Donohue, C.3
Oh, H.4
Khurasany, M.5
-
52
-
-
84875717291
-
Glutathione and infection
-
Morris, D., M. Khurasany, T. Nguyen, J. Kim, F. Guilford et al. 2013 Glutathione and infection. Biochim. Biophys. Acta. 1830: 3329-3349.
-
(2013)
Biochim. Biophys. Acta.
, vol.1830
, pp. 3329-3349
-
-
Morris, D.1
Khurasany, M.2
Nguyen, T.3
Kim, J.4
Guilford, F.5
-
53
-
-
84861220033
-
AMP-activated kinase restricts Rift Valley fever virus infection by inhibiting fatty acid synthesis
-
Moser, T. S., D. Schieffer, and S. Cherry, 2012 AMP-activated kinase restricts Rift Valley fever virus infection by inhibiting fatty acid synthesis. PLoS Pathog. 8: e1002661.
-
(2012)
PLoS Pathog.
, vol.8
-
-
Moser, T.S.1
Schieffer, D.2
Cherry, S.3
-
54
-
-
71549117271
-
Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling as potential mechanism for the negative relationships between immune response and lipid metabolism
-
Moyes, K. M., J. K. Drackley, D. E. Morin, M. Bionaz, S. L. Rodriguez-Zas et al. 2009 Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling as potential mechanism for the negative relationships between immune response and lipid metabolism. BMC Genomics 10: 542.
-
(2009)
BMC Genomics
, vol.10
, pp. 542
-
-
Moyes, K.M.1
Drackley, J.K.2
Morin, D.E.3
Bionaz, M.4
Rodriguez-Zas, S.L.5
-
55
-
-
84864448111
-
High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries
-
Mullokandov, G., A. Baccarini, A. Ruzo, A. D. Jayaprakash, N. Tung et al. 2012 High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries. Nat. Methods 9: 840-846.
-
(2012)
Nat. Methods
, vol.9
, pp. 840-846
-
-
Mullokandov, G.1
Baccarini, A.2
Ruzo, A.3
Jayaprakash, A.D.4
Tung, N.5
-
56
-
-
75649139134
-
Physiological and pathological roles for microRNAs in the immune system
-
O'Connell, R. M., D. S. Rao, A. A. Chaudhuri, and D. Baltimore, 2010 Physiological and pathological roles for microRNAs in the immune system. Nat. Rev. Immunol. 10: 111-122.
-
(2010)
Nat. Rev. Immunol.
, vol.10
, pp. 111-122
-
-
O'Connell, R.M.1
Rao, D.S.2
Chaudhuri, A.A.3
Baltimore, D.4
-
57
-
-
84875188784
-
Repertoire of Escherichia coli agonists sensed by innate immunity receptors of the bovine udder and mammary epithelial cells
-
Porcherie, A., P. Cunha, A. Trotereau, P. Roussel, F. B. Gilbert et al. 2012 Repertoire of Escherichia coli agonists sensed by innate immunity receptors of the bovine udder and mammary epithelial cells. Vet. Res. 43: 14.
-
(2012)
Vet. Res.
, vol.43
, pp. 14
-
-
Porcherie, A.1
Cunha, P.2
Trotereau, A.3
Roussel, P.4
Gilbert, F.B.5
-
58
-
-
26944485547
-
Shortterm effects on pro-inflammatory cytokine, lactoferrin and CD14 mRNA expression levels in bovine immunoseparated milk and blood cells treated by LPS
-
Prgomet, C., H. Sarikaya, R. M. Bruckmaier, and M. W. Pfaffl, 2005 Shortterm effects on pro-inflammatory cytokine, lactoferrin and CD14 mRNA expression levels in bovine immunoseparated milk and blood cells treated by LPS. J. Vet. Med. A Physiol. Pathol. Clin. Med. 52: 317-324.
-
(2005)
J. Vet. Med. A Physiol. Pathol. Clin. Med.
, vol.52
, pp. 317-324
-
-
Prgomet, C.1
Sarikaya, H.2
Bruckmaier, R.M.3
Pfaffl, M.W.4
-
59
-
-
84875798802
-
-
Reinhardt, T. A., R. E. Sacco, B. J. Nonnecke, and J. D. Lippolis, 2013 Bovine milk proteome: quantitative changes in normal milk exosomes, milk fat globule membranes and whey proteomes resulting from Staphylococcus aureus mastitis. J. Proteomics 82: 141-154.
-
, vol.82
, pp. 141-154
-
-
-
60
-
-
79953731500
-
Distribution of virulence-associated genes in Streptococcus uberis isolated from bovine mastitis
-
Reinoso, E. B., M. C. Lasagno, S. A. Dieser, and L. M. Odierno, 2011 Distribution of virulence-associated genes in Streptococcus uberis isolated from bovine mastitis. FEMS Microbiol. Lett. 318: 183-188.
-
(2011)
FEMS Microbiol. Lett.
, vol.318
, pp. 183-188
-
-
Reinoso, E.B.1
Lasagno, M.C.2
Dieser, S.A.3
Odierno, L.M.4
-
61
-
-
78650306858
-
Mastitis associated transcriptomic disruptions in cattle
-
Rinaldi, M., R. W. Li, and A. V. Capuco, 2010 Mastitis associated transcriptomic disruptions in cattle. Vet. Immunol. Immunopathol. 138: 267-279.
-
(2010)
Vet. Immunol. Immunopathol.
, vol.138
, pp. 267-279
-
-
Rinaldi, M.1
Li, R.W.2
Capuco, A.V.3
-
62
-
-
75249087100
-
-
Robinson, M. D., D. J. McCarthy, and G. K. Smyth, 2010 edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
-
, vol.26
, pp. 139-140
-
-
-
63
-
-
84872172471
-
Adenosine stimulates the migration of human endothelial progenitor cells Role of CXCR4 and microRNA-150
-
Rolland-Turner, M., E. Goretti, M. Bousquenaud, F. Leonard, C. Nicolas et al. 2013 Adenosine stimulates the migration of human endothelial progenitor cells. Role of CXCR4 and microRNA-150. PLoS ONE 8: e54135.
-
(2013)
PLoS ONE
, vol.8
-
-
Rolland-Turner, M.1
Goretti, E.2
Bousquenaud, M.3
Leonard, F.4
Nicolas, C.5
-
64
-
-
84871114685
-
miR-451 regulates dendritic cell cytokine responses to influenza infection
-
Rosenberger, C. M., R. L. Podyminogin, G. Navarro, G. W. Zhao, P. S.Askovich et al. 2012 miR-451 regulates dendritic cell cytokine responses to influenza infection. J. Immunol. 189: 5965-5975.
-
(2012)
J. Immunol.
, vol.189
, pp. 5965-5975
-
-
Rosenberger, C.M.1
Podyminogin, R.L.2
Navarro, G.3
Zhao, G.W.4
Askovich, P.S.5
-
65
-
-
0033552883
-
Atherosclerosis an inflammatory disease
-
Ross, R., 1999 Atherosclerosis an inflammatory disease. N. Engl. J. Med. 340: 115-126.
-
(1999)
N. Engl. J. Med.
, vol.340
, pp. 115-126
-
-
Ross, R.1
-
66
-
-
84870619467
-
miR-155 targets histone deacetylase 4 (HDAC4) and impairs transcriptional activity of B-cell lymphoma 6 (BCL6) in the Emu-miR-155 transgenic mouse model
-
Sandhu, S. K., S. Volinia, S. Costinean, M. Galasso, R. Neinast et al. 2012 miR-155 targets histone deacetylase 4 (HDAC4) and impairs transcriptional activity of B-cell lymphoma 6 (BCL6) in the Emu-miR-155 transgenic mouse model. Proc. Natl. Acad. Sci. USA 109: 20047-20052.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 20047-20052
-
-
Sandhu, S.K.1
Volinia, S.2
Costinean, S.3
Galasso, M.4
Neinast, R.5
-
67
-
-
37749031255
-
-
Schuster, S. C., 2008 Next-generation sequencing transforms today's biology. Nat. Methods 5: 16-18.
-
, vol.5
, pp. 16-18
-
-
-
68
-
-
73249123069
-
Mechanisms of human insulin resistance and thiazolidinedionemediated insulin sensitization
-
Sears, D. D., G. Hsiao, A. Hsiao, J. G. Yu, C. H. Courtney et al. 2009 Mechanisms of human insulin resistance and thiazolidinedionemediated insulin sensitization. Proc. Natl. Acad. Sci. USA 106: 18745-18750.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 18745-18750
-
-
Sears, D.D.1
Hsiao, G.2
Hsiao, A.3
Yu, J.G.4
Courtney, C.H.5
-
69
-
-
42649108339
-
Monocyte-mediated defense against microbial pathogens
-
Serbina, N. V., T. Jia, T. M. Hohl, and E. G. Pamer, 2008 Monocyte-mediated defense against microbial pathogens. Annu. Rev. Immunol. 26: 421-452.
-
(2008)
Annu. Rev. Immunol.
, pp. 421-452
-
-
Serbina, N.V.1
Jia, T.2
Hohl, T.M.3
Pamer, E.G.4
-
70
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon, P., A. Markiel, O. Ozier, N. S. Baliga, J. T. Wang et al. 2003 Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13: 2498-2504.
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
-
71
-
-
79956353001
-
Integrated microRNA-mRNA-analysis of human monocyte derived macrophages upon Mycobacterium avium subsp hominissuis infection
-
Sharbati, J., A. Lewin, B. Kutz-Lohroff, E. Kamal, R. Einspanier et al. 2011 Integrated microRNA-mRNA-analysis of human monocyte derived macrophages upon Mycobacterium avium subsp. hominissuis infection. PLoS ONE 6: e20258.
-
(2011)
PLoS ONE
, vol.6
-
-
Sharbati, J.1
Lewin, A.2
Kutz-Lohroff, B.3
Kamal, E.4
Einspanier, R.5
-
72
-
-
80355146868
-
Monocyte recruitment during infection and inflammation
-
Shi, C., and E. G. Pamer, 2011 Monocyte recruitment during infection and inflammation. Nat. Rev. Immunol. 11: 762-774.
-
(2011)
Nat. Rev. Immunol.
, vol.11
, pp. 762-774
-
-
Shi, C.1
Pamer, E.G.2
-
73
-
-
58349119593
-
Transcriptome profiling of Streptococcus uberis-induced mastitis reveals fundamental differences between immune gene expression in the mammary gland and in a primary cell culture model
-
Swanson, K. M., K. Stelwagen, J. Dobson, H. V. Henderson, S. R. Davis et al. 2009 Transcriptome profiling of Streptococcus uberis-induced mastitis reveals fundamental differences between immune gene expression in the mammary gland and in a primary cell culture model. J. Dairy Sci. 92: 117-129.
-
(2009)
J. Dairy Sci.
, vol.92
, pp. 117-129
-
-
Swanson, K.M.1
Stelwagen, K.2
Dobson, J.3
Henderson, H.V.4
Davis, S.R.5
-
74
-
-
33747608638
-
-
Taganov, K. D., M. P. Boldin, K. J. Chang, and D. Baltimore, 2006 NFkappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. Proc. Natl. Acad. Sci. USA 103: 12481-12486.
-
, vol.103
, pp. 12481-12486
-
-
-
75
-
-
84876285741
-
Succinate is an inflammatory signal that induces IL-1beta through HIF-1alpha
-
Tannahill, G. M., A. M. Curtis, J. Adamik, E. M. Palsson-McDermott, A. F. McGettrick et al. 2013 Succinate is an inflammatory signal that induces IL-1beta through HIF-1alpha. Nature 496: 238-242.
-
(2013)
Nature
, vol.496
, pp. 238-242
-
-
Tannahill, G.M.1
Curtis, A.M.2
Adamik, J.3
Palsson-McDermott, E.M.4
McGettrick, A.F.5
-
76
-
-
80055061481
-
-
Tano, N., H. W. Kim, and M. Ashraf, 2011 microRNA-150 regulates mobilization and migration of bone marrow-derived mononuclear cells by targeting Cxcr4. PLoS ONE 6: e23114.
-
, vol.6
-
-
-
77
-
-
65449136284
-
-
Trapnell, C., L. Pachter, and S. L. Salzberg, 2009 TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
-
, vol.25
, pp. 1105-1111
-
-
-
78
-
-
77954270706
-
Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood
-
Vaz, C., H. M. Ahmad, P. Sharma, R. Gupta, L. Kumar et al. 2010 Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. BMC Genomics 11: 288.
-
(2010)
BMC Genomics
, vol.11
, pp. 288
-
-
Vaz, C.1
Ahmad, H.M.2
Sharma, P.3
Gupta, R.4
Kumar, L.5
-
79
-
-
0037378996
-
Role of glutathione in macrophage control of mycobacteria
-
Venketaraman, V., Y. K. Dayaram, A. G. Amin, R. Ngo, R. M. Green et al. 2003 Role of glutathione in macrophage control of mycobacteria. Infect. Immun. 71: 1864-1871.
-
(2003)
Infect. Immun.
, vol.71
, pp. 1864-1871
-
-
Venketaraman, V.1
Dayaram, Y.K.2
Amin, A.G.3
Ngo, R.4
Green, R.M.5
-
80
-
-
79251612882
-
Regulation of neutrophil senescence by microRNAs
-
Ward, J. R., P. R. Heath, J. W. Catto, M. K. Whyte, M. Milo et al. 2011 Regulation of neutrophil senescence by microRNAs. PLoS ONE 6: e15810.
-
(2011)
PLoS ONE
, vol.6
-
-
Ward, J.R.1
Heath, P.R.2
Catto, J.W.3
Whyte, M.K.4
Milo, M.5
-
81
-
-
62749122218
-
Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis
-
Ward, P. N., M. T. Holden, J. A. Leigh, N. Lennard, A. Bignell et al. 2009 Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis. BMC Genomics 10: 54.
-
(2009)
BMC Genomics
, vol.10
, pp. 54
-
-
Ward, P.N.1
Holden, M.T.2
Leigh, J.A.3
Lennard, N.4
Bignell, A.5
-
82
-
-
0032201083
-
Key health issues for dairy cattle-new and old
-
Wells, S. J., S. L. Ott, and A. H. Seitzinger, 1998 Key health issues for dairy cattle-new and old. J. Dairy Sci. 81: 3029-3035.
-
(1998)
J. Dairy Sci.
, vol.81
, pp. 3029-3035
-
-
Wells, S.J.1
Ott, S.L.2
Seitzinger, A.H.3
-
83
-
-
79952189185
-
Experimental Staphylococcus aureus infection of the mammary gland induces region-specific changes in innate immune gene expression
-
Whelehan, C. J., K. G. Meade, P. D. Eckersall, F. J. Young, and C. O'Farrelly, 2011 Experimental Staphylococcus aureus infection of the mammary gland induces region-specific changes in innate immune gene expression. Vet. Immunol. Immunopathol. 140: 181-189.
-
(2011)
Vet. Immunol. Immunopathol.
, vol.140
, pp. 181-189
-
-
Whelehan, C.J.1
Meade, K.G.2
Eckersall, P.D.3
Young, F.J.4
O'Farrelly, C.5
-
84
-
-
70450265680
-
Cloning and identification of microRNAs in bovine alveolar macrophages
-
Xu, G., Y. Zhang, H. Jia, J. Li, X. Liu et al. 2009 Cloning and identification of microRNAs in bovine alveolar macrophages. Mol. Cell. Biochem. 332: 9-16.
-
(2009)
Mol. Cell. Biochem.
, vol.332
, pp. 9-16
-
-
Xu, G.1
Zhang, Y.2
Jia, H.3
Li, J.4
Liu, X.5
-
85
-
-
51649115553
-
-
Yamakuchi, M., M. Ferlito, and C. J. Lowenstein, 2008 miR-34a repression of SIRT1 regulates apoptosis. Proc. Natl. Acad. Sci. USA 105: 13421-13426.
-
, vol.105
, pp. 13421-13426
-
-
-
86
-
-
77953212372
-
Gene ontology analysis for RNA-seq: accounting for selection bias
-
Young, M. D., M. J. Wakefield, G. K. Smyth, and A. Oshlack, 2010 Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol. 11: R14.
-
(2010)
Genome Biol.
, vol.11
-
-
Young, M.D.1
Wakefield, M.J.2
Smyth, G.K.3
Oshlack, A.4
-
87
-
-
34247622363
-
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
-
Yu, H., P. M. Kim, E. Sprecher, V. Trifonov, and M. Gerstein, 2007 The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLOS Comput. Biol. 3: e59.
-
(2007)
PLOS Comput. Biol.
, vol.3
-
-
Yu, H.1
Kim, P.M.2
Sprecher, E.3
Trifonov, V.4
Gerstein, M.5
-
88
-
-
65149096757
-
A whole-genome assembly of the domestic cow, Bos taurus
-
Zimin, A. V., A. L. Delcher, L. Florea, D. R. Kelley, M. C. Schatz et al. 2009 A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol. 10: R42.
-
(2009)
Genome Biol.
, vol.10
-
-
Zimin, A.V.1
Delcher, A.L.2
Florea, L.3
Kelley, D.R.4
Schatz, M.C.5
|