메뉴 건너뛰기




Volumn , Issue SUPPL.36, 2011, Pages

Identification of novel and known unit 12.10 miRNAs in deep-sequencing data with miRDeep2

Author keywords

Expression; Gene prediction; microRNA; miRDeep2; miRNA; Profiling; Sequencing

Indexed keywords

MICRORNA;

EID: 84857568522     PISSN: 19343396     EISSN: 1934340X     Source Type: Journal    
DOI: 10.1002/0471250953.bi1210s36     Document Type: Article
Times cited : (114)

References (13)
  • 1
    • 10244243802 scopus 로고    scopus 로고
    • Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
    • Bonnet, E.,Wuyts, J., Rouze, P., and Van de Peer, Y. 2004. Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 20:2911-2917.
    • (2004) Bioinformatics , vol.20 , pp. 2911-2917
    • Bonnet, E.1    Wuyts, J.2    Rouze, P.3    Van de Peer, Y.4
  • 3
    • 81355159096 scopus 로고    scopus 로고
    • miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    • [Epub ahead of print]
    • Friedländer, M.R., Mackowiak, S.D., Li, N., Chen, W., and Rajewsky, N. 2011. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res. [Epub ahead of print]
    • (2011) Nucleic Acids Res
    • Friedländer, M.R.1    Mackowiak, S.D.2    Li, N.3    Chen, W.4    Rajewsky, N.5
  • 7
    • 77950547534 scopus 로고    scopus 로고
    • miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    • Hendrix, D., Levine, M., and Shi, W. 2010. miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data. Genome Biol. 11:R39.
    • (2010) Genome Biol , vol.11
    • Hendrix, D.1    Levine, M.2    Shi, W.3
  • 8
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • Hofacker, I.L. 2003. Vienna RNA secondary structure server. Nucleic Acids Res. 31:3429-3431.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1
  • 10
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M., and Salzberg, S.L. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 11
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee, R.C., Feinbaum, R.L., and Ambros, V. 1993.The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75:843-854.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 12
    • 77956508095 scopus 로고    scopus 로고
    • MIReNA: Finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data
    • Mathelier, A. and Carbone, A. 2010. MIReNA: Finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data. Bioinformatics 26:2226-2234.
    • (2010) Bioinformatics , vol.26 , pp. 2226-2234
    • Mathelier, A.1    Carbone, A.2
  • 13
    • 61849137222 scopus 로고    scopus 로고
    • Many roads to maturity: microRNA biogenesis pathways and their regulation
    • Winter, J., Jung, S., Keller, S., Gregory, R.I., and Diederichs, S. 2009. Many roads to maturity: microRNA biogenesis pathways and their regulation. Nat. Cell Biol. 11:228-234.
    • (2009) Nat. Cell Biol. , vol.11 , pp. 228-234
    • Winter, J.1    Jung, S.2    Keller, S.3    Gregory, R.I.4    Diederichs, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.