-
1
-
-
62149144693
-
Computer science: Beyond the data deluge
-
2-s2.0-62149144693 10.1126/science.1170411
-
Bell G., Hey T., Szalay A., Computer science: beyond the data deluge. Science 2009 323 5919 1297 1298 2-s2.0-62149144693 10.1126/science.1170411
-
(2009)
Science
, vol.323
, Issue.5919
, pp. 1297-1298
-
-
Bell, G.1
Hey, T.2
Szalay, A.3
-
3
-
-
84892767391
-
KNApSAcK metabolite activity database for retrieving the relationships between metabolites and biological activities
-
10.1093/pcp/pct176
-
Nakamura Y., Afendi F. M., Parvin A. K., Ono N., Tanaka K., Morita A. H., Sato T., Sugiura T., Altaf-Ul-Amin M., Kanaya S., KNApSAcK metabolite activity database for retrieving the relationships between metabolites and biological activities. Plant and Cell Physiology 2014 55 1 e7 10.1093/pcp/pct176
-
(2014)
Plant and Cell Physiology
, vol.55
, Issue.1
-
-
Nakamura, Y.1
Afendi, F.M.2
Parvin, A.K.3
Ono, N.4
Tanaka, K.5
Morita, A.H.6
Sato, T.7
Sugiura, T.8
Altaf-Ul-Amin, M.9
Kanaya, S.10
-
4
-
-
0004023814
-
-
New York, NY, USA McGraw-Hill
-
Kandel E. R., Schwartz J. H., Jessell T. M., Principles of Neural Science 2000 4 New York, NY, USA McGraw-Hill
-
(2000)
Principles of Neural Science
, vol.4
-
-
Kandel, E.R.1
Schwartz, J.H.2
Jessell, T.M.3
-
5
-
-
0034821884
-
Codon usage and tRNA genes in eukaryotes: Correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis
-
DOI 10.1007/s002390010219
-
Kanaya S., Yamada Y., Kinouchi M., Kudo Y., Ikemura T., Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis. Journal of Molecular Evolution 2001 53 4-5 290 298 2-s2.0-0034821884 10.1007/s002390010219 (Pubitemid 32889537)
-
(2001)
Journal of Molecular Evolution
, vol.53
, Issue.4-5
, pp. 290-298
-
-
Kanaya, S.1
Yamada, Y.2
Kinouchi, M.3
Kudo, Y.4
Ikemura, T.5
-
6
-
-
84874722535
-
Non-optimal codon usage is a mechanism to achieve circadian clock conditionality
-
2-s2.0-84874722535 10.1038/nature11942
-
Xu Y., Ma P., Shah P., Rokas A., Liu Y., Johnson C. H., Non-optimal codon usage is a mechanism to achieve circadian clock conditionality. Nature 2013 494 7439 116 120 2-s2.0-84874722535 10.1038/nature11942
-
(2013)
Nature
, vol.494
, Issue.7439
, pp. 116-120
-
-
Xu, Y.1
Ma, P.2
Shah, P.3
Rokas, A.4
Liu, Y.5
Johnson, C.H.6
-
9
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
DOI 10.1038/35057062
-
Lander E. S., Linton L. M., Birren B., Initial sequencing and analysis of the human genome. Nature 2001 409 6822 860 921 10.1038/35057062 (Pubitemid 32165345)
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
Levine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Dunham, A.46
Dunham, I.47
Durbin, R.48
French, L.49
Grafham, D.50
Gregory, S.51
Hubbard, T.52
Humphray, S.53
Hunt, A.54
Jones, M.55
Lloyd, C.56
McMurray, A.57
Matthews, L.58
Mercer, S.59
Milne, S.60
Mullikin, J.C.61
Mungall, A.62
Plumb, R.63
Ross, M.64
Shownkeen, R.65
Sims, S.66
Waterston, R.H.67
Wilson, R.K.68
Hillier, L.W.69
McPherson, J.D.70
Marra, M.A.71
Mardis, E.R.72
Fulton, L.A.73
Chinwalla, A.T.74
Pepin, K.H.75
Gish, W.R.76
Chissoe, S.L.77
Wendl, M.C.78
Delehaunty, K.D.79
more..
-
10
-
-
34249723655
-
Advanced sequencing technologies and their wider impact in microbiology
-
DOI 10.1242/jeb.001370
-
Hall N., Advanced sequencing technologies and their wider impact in microbiology. Journal of Experimental Biology 2007 210 9 1518 1525 2-s2.0-34249723655 10.1242/jeb.001370 (Pubitemid 46841957)
-
(2007)
Journal of Experimental Biology
, vol.210
, Issue.9
, pp. 1518-1525
-
-
Hall, N.1
-
11
-
-
68249092574
-
Massively parallel sequencing: The next big thing in genetic medicine
-
2-s2.0-68249092574 10.1016/j.ajhg.2009.06.022
-
Tucker T., Marra M., Friedman J. M., Massively parallel sequencing: the next big thing in genetic medicine. The American Journal of Human Genetics 2009 85 2 142 154 2-s2.0-68249092574 10.1016/j.ajhg.2009.06.022
-
(2009)
The American Journal of Human Genetics
, vol.85
, Issue.2
, pp. 142-154
-
-
Tucker, T.1
Marra, M.2
Friedman, J.M.3
-
12
-
-
55949095205
-
Keeping up with the next generation: Massively parallel sequencing in clinical diagnostics
-
2-s2.0-55949095205 10.2353/jmoldx.2008.080027
-
Ten Bosch J. R., Grody W. W., Keeping up with the next generation: massively parallel sequencing in clinical diagnostics. Journal of Molecular Diagnostics 2008 10 6 484 492 2-s2.0-55949095205 10.2353/jmoldx.2008.080027
-
(2008)
Journal of Molecular Diagnostics
, vol.10
, Issue.6
, pp. 484-492
-
-
Ten Bosch, J.R.1
Grody, W.W.2
-
13
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
2-s2.0-0034697980 10.1006/jmbi.2000.3903
-
Emanuelsson O., Nielsen H., Brunak S., von Heijne G., Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. Journal of Molecular Biology 2000 300 4 1005 1016 2-s2.0-0034697980 10.1006/jmbi.2000.3903
-
(2000)
Journal of Molecular Biology
, vol.300
, Issue.4
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
Von Heijne, G.4
-
14
-
-
44949145113
-
Progress and challenges in protein structure prediction
-
2-s2.0-44949145113 10.1016/j.sbi.2008.02.004
-
Zhang Y., Progress and challenges in protein structure prediction. Current Opinion in Structural Biology 2008 18 3 342 348 2-s2.0-44949145113 10.1016/j.sbi.2008.02.004
-
(2008)
Current Opinion in Structural Biology
, vol.18
, Issue.3
, pp. 342-348
-
-
Zhang, Y.1
-
15
-
-
84863522073
-
Towards 3D structure prediction of large RNA molecules: An integer programming framework to insert local 3D motifs in RNA secondary structure
-
2-s2.0-84863522073 10.1093/bioinformatics/bts226
-
Reinharz V., Major F., Waldispühl J., Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure. Bioinformatics 2012 28 12 i207 i214 2-s2.0-84863522073 10.1093/bioinformatics/bts226
-
(2012)
Bioinformatics
, vol.28
, Issue.12
-
-
Reinharz, V.1
Major, F.2
Waldispühl, J.3
-
16
-
-
79959481959
-
A conditional random fields method for RNA sequence-structure relationship modeling and conformation sampling
-
2-s2.0-79959481959 10.1093/bioinformatics/btr232
-
Wang Z., Xu J., A conditional random fields method for RNA sequence-structure relationship modeling and conformation sampling. Bioinformatics 2011 27 13 i102 i110 2-s2.0-79959481959 10.1093/bioinformatics/ btr232
-
(2011)
Bioinformatics
, vol.27
, Issue.13
-
-
Wang, Z.1
Xu, J.2
-
17
-
-
77953784130
-
Computational approaches to 3D modeling of RNA
-
2-s2.0-77953784130 10.1088/0953-8984/22/28/283101 283101
-
Laing C., Schlick T., Computational approaches to 3D modeling of RNA. Journal of Physics Condensed Matter 2010 22 28 2-s2.0-77953784130 10.1088/0953-8984/22/28/283101 283101
-
(2010)
Journal of Physics Condensed Matter
, vol.22
, Issue.28
-
-
Laing, C.1
Schlick, T.2
-
18
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
2-s2.0-0028806048
-
Schena M., Shalon D., Davis R. W., Brown P. O., Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995 270 5235 467 470 2-s2.0-0028806048
-
(1995)
Science
, vol.270
, Issue.5235
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
19
-
-
0030699475
-
Yeast microarrays for genome wide parallel genetic and gene expression analysis
-
DOI 10.1073/pnas.94.24.13057
-
Lashkari D. A., Derisi J. L., Mccusker J. H., Namath A. F., Gentile C., Hwang S. Y., Brown P. O., Davis R. W., Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proceedings of the National Academy of Sciences of the United States of America 1997 94 24 13057 13062 2-s2.0-0030699475 10.1073/pnas.94.24.13057 (Pubitemid 27518475)
-
(1997)
Proceedings of the National Academy of Sciences of the United States of America
, vol.94
, Issue.24
, pp. 13057-13062
-
-
Lashkari, D.A.1
Derisi, J.L.2
Mccusker, J.H.3
Namath, A.F.4
Gentile, C.5
Hwang, S.Y.6
Brown, P.O.7
Davis, R.W.8
-
20
-
-
38049091067
-
Gene expression profiling by massively parallel sequencing
-
2-s2.0-38049091067 10.1101/gr.6984908
-
Torres T. T., Metta M., Ottenwälder B., Schlötterer C., Gene expression profiling by massively parallel sequencing. Genome Research 2008 18 1 172 177 2-s2.0-38049091067 10.1101/gr.6984908
-
(2008)
Genome Research
, vol.18
, Issue.1
, pp. 172-177
-
-
Torres, T.T.1
Metta, M.2
Ottenwälder, B.3
Schlötterer, C.4
-
21
-
-
20744440509
-
Identification of transcription factor binding sites with variable-order Bayesian networks
-
DOI 10.1093/bioinformatics/bti410
-
Ben-Gal I., Shani A., Gohr A., Grau J., Arviv S., Shmilovici A., Posch S., Grosse I., Identification of transcription factor binding sites with variable-order Bayesian networks. Bioinformatics 2005 21 11 2657 2666 2-s2.0-20744440509 10.1093/bioinformatics/bti410 (Pubitemid 40852312)
-
(2005)
Bioinformatics
, vol.21
, Issue.11
, pp. 2657-2666
-
-
Ben-Gal, I.1
Shani, A.2
Gohr, A.3
Grau, J.4
Arviv, S.5
Shmilovici, A.6
Posch, S.7
Grosse, I.8
-
23
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
DOI 10.1073/pnas.061034498
-
Ito T., Chiba T., Ozawa R., Yoshida M., Hattori M., Sakaki Y., A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proceedings of the National Academy of Sciences of the United States of America 2001 98 8 4569 4574 2-s2.0-0035836765 10.1073/pnas.061034498 (Pubitemid 32295017)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.8
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
24
-
-
84872380683
-
Studying protein complexes by the yeast two-hybrid system
-
2-s2.0-84872380683 10.1016/j.ymeth.2012.07.015
-
Rajagopala S. V., Sikorski P., Caufield J. H., Tovchigrechko A., Uetz P., Studying protein complexes by the yeast two-hybrid system. Methods 2012 58 4 392 399 2-s2.0-84872380683 10.1016/j.ymeth.2012.07.015
-
(2012)
Methods
, vol.58
, Issue.4
, pp. 392-399
-
-
Rajagopala, S.V.1
Sikorski, P.2
Caufield, J.H.3
Tovchigrechko, A.4
Uetz, P.5
-
25
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
DOI 10.1038/415141a
-
Gavin A. C., Bösche M., Krause R., Grandi P., Marzioch M., Bauer A., Schultz J., Rick J. M., Michon A., Cruciat C. M., Remor M., Höfert C., Schelder M., Brajenovic M., Ruffner H., Merino A., Klein K., Hudak M., Dickson D., Rudi T., Gnau V., Bauch A., Bastuck S., Huhse B., Leutwein C., Heurtier M., Copley R. R., Edelmann A., Querfurth E., Rybin V., Drewes G., Raida M., Bouwmeester T., Bork P., Seraphin B., Kuster B., Neubauer G., Superti-Furga G., Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002 415 6868 141 147 2-s2.0-0037050026 10.1038/415141a (Pubitemid 34059510)
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 141-147
-
-
Gavin, A.-C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.-M.9
Cruciat, C.-M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heurtier, M.-A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
Drewes, G.31
Raida, M.32
Bouwmeester, T.33
Bork, P.34
Seraphin, B.35
Kuster, B.36
Neubauer, G.37
Superti-Furga, G.38
more..
-
27
-
-
33751361595
-
-
New York, NY, USA Cambridge University Press
-
Palsson B. O., Systems Biology 2006 New York, NY, USA Cambridge University Press
-
(2006)
Systems Biology
-
-
Palsson, B.O.1
-
28
-
-
33645756545
-
-
New York, NY, USA Springer Statistics for Biology and Health
-
Gentleman R., Carey V., Huber W., Irizarry R. A., Dudoit S., Bioinformatics and Computational Biology Solutions Using R and Bioconductor 2005 New York, NY, USA Springer Statistics for Biology and Health
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
-
-
Gentleman, R.1
Carey, V.2
Huber, W.3
Irizarry, R.A.4
Dudoit, S.5
-
31
-
-
41149126422
-
Metabolome based reaction graphs of M. Tuberculosis and M. Leprae: A comparative network analysis
-
DOI 10.1371/journal.pone.0000881
-
Verkhedkar K. D., Raman K., Chandra N. R., Vishveshwara S., Metabolome based reaction graphs of M. tuberculosis and M. leprae: a comparative network analysis. PLoS ONE 2007 2 9, article e881 2-s2.0-41149126422 10.1371/journal.pone.0000881 (Pubitemid 351425667)
-
(2007)
PLoS ONE
, vol.2
, Issue.9
-
-
Verkhedkar, K.D.1
Raman, K.2
Chandra, N.R.3
Vishveshwara, S.4
-
32
-
-
0346156102
-
Detection of functional modules from protein interaction networks
-
DOI 10.1002/prot.10505
-
Pereira-Leal J. B., Enright A. J., Ouzounis C. A., Detection of functional modules from protein interaction networks. Proteins: Structure, Function and Genetics 2004 54 1 49 57 2-s2.0-0346156102 10.1002/prot.10505 (Pubitemid 38036914)
-
(2004)
Proteins: Structure, Function and Genetics
, vol.54
, Issue.1
, pp. 49-57
-
-
Pereira-Leal, J.B.1
Enright, A.J.2
Ouzounis, C.A.3
-
33
-
-
78651265065
-
DDBJ progress report
-
2-s2.0-78651265065 10.1093/nar/gkq1041
-
Kaminuma E., Kosuge T., Kodama Y., Aono H., Mashima J., Gojobori T., Sugawara H., Ogasawara O., Takagi T., Okubo K., Nakamura Y., DDBJ progress report. Nucleic Acids Research 2011 39 1 D22 D27 2-s2.0-78651265065 10.1093/nar/gkq1041
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.1
-
-
Kaminuma, E.1
Kosuge, T.2
Kodama, Y.3
Aono, H.4
Mashima, J.5
Gojobori, T.6
Sugawara, H.7
Ogasawara, O.8
Takagi, T.9
Okubo, K.10
Nakamura, Y.11
-
34
-
-
38549164691
-
GenBank
-
DOI 10.1093/nar/gkm929
-
Benson D. A., Karsch-Mizrachi I., Lipman D. J., Ostell J., Wheeler D. L., GenBank. Nucleic Acids Research 2008 36 supplement 1 D25 D30 2-s2.0-38549164691 10.1093/nar/gkm929 (Pubitemid 351149691)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
35
-
-
84892778109
-
Plant Genome DataBase Japan (PGDBj): A portal website for the integration of plant genome-related databases
-
10.1093/pcp/pct189
-
Asamizu E., Ichihara H., Nakaya A., Nakamura Y., Hirakawa H., Ishii T., Tamura T., Fukami-Kobayashi K., Nakajima Y., Tabata S., Plant Genome DataBase Japan (PGDBj): a portal website for the integration of plant genome-related databases. Plant and Cell Physiology 2014 55 1 e8 10.1093/pcp/pct189
-
(2014)
Plant and Cell Physiology
, vol.55
, Issue.1
-
-
Asamizu, E.1
Ichihara, H.2
Nakaya, A.3
Nakamura, Y.4
Hirakawa, H.5
Ishii, T.6
Tamura, T.7
Fukami-Kobayashi, K.8
Nakajima, Y.9
Tabata, S.10
-
36
-
-
84892736334
-
ATTED-II in 2014: Evaluation of gene coexpression in agriculturally important plants
-
10.1093/pcp/pct178
-
Obayashi T., Okamura Y., Ito S., Tadaka S., Aoki Y., Shirota M., Kinoshita K., ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants. Plant and Cell Physiology 2014 55 1 e6 10.1093/pcp/pct178
-
(2014)
Plant and Cell Physiology
, vol.55
, Issue.1
-
-
Obayashi, T.1
Okamura, Y.2
Ito, S.3
Tadaka, S.4
Aoki, Y.5
Shirota, M.6
Kinoshita, K.7
-
37
-
-
84874266637
-
Rfam 11.0: 10 years of RNA families
-
2-s2.0-84874266637 10.1093/nar/gks1005
-
Burge S. W., Daub J., Eberhardt R., Tate J., Barquist L., Nawrocki E. P., Eddy S. R., Gardner P. P., Bateman A., Rfam 11.0: 10 years of RNA families. Nucleic Acids Research 2013 41 1 D226 D232 2-s2.0-84874266637 10.1093/nar/gks1005
-
(2013)
Nucleic Acids Research
, vol.41
, Issue.1
-
-
Burge, S.W.1
Daub, J.2
Eberhardt, R.3
Tate, J.4
Barquist, L.5
Nawrocki, E.P.6
Eddy, S.R.7
Gardner, P.P.8
Bateman, A.9
-
38
-
-
84891818318
-
MiRBase: Annotating high confidence microRNAs using deep sequencing data
-
10.1093/nar/gkt1181
-
Kozomara A., Griffiths-Jones S., miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Research 2014 42 1 D68 D73 10.1093/nar/gkt1181
-
(2014)
Nucleic Acids Research
, vol.42
, Issue.1
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
39
-
-
84874724662
-
Update on activities at the universal protein resource (UniProt) in 2013
-
10.1093/nar/gks1068
-
The UniProt Consortium, Update on activities at the universal protein resource (UniProt) in 2013. Nucleic Acids Research 2013 41 1 D43 D47 10.1093/nar/gks1068
-
(2013)
Nucleic Acids Research
, vol.41
, Issue.1
-
-
Uniprot Consortium, T.1
-
40
-
-
84876588470
-
New and continuing developments at PROSITE
-
2-s2.0-84876588470 10.1093/nar/gks1067
-
Sigrist C. J. A., de Castro E., Cerutti L., Cuche B. A., Hulo N., Bridge A., Bougueleret L., Xenarios I., New and continuing developments at PROSITE. Nucleic Acids Research 2013 41 1 D344 D347 2-s2.0-84876588470 10.1093/nar/gks1067
-
(2013)
Nucleic Acids Research
, vol.41
, Issue.1
-
-
Sigrist, C.J.A.1
De Castro, E.2
Cerutti, L.3
Cuche, B.A.4
Hulo, N.5
Bridge, A.6
Bougueleret, L.7
Xenarios, I.8
-
41
-
-
0037245913
-
BIND: The biomolecular interaction network database
-
DOI 10.1093/nar/gkg056
-
Bader G. D., Betel D., Hogue C. W. V., BIND: the biomolecular interaction network database. Nucleic Acids Research 2003 31 1 248 250 2-s2.0-0037245913 10.1093/nar/gkg056 (Pubitemid 36150376)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.W.V.3
-
42
-
-
33644873184
-
BioGRID: A general repository for interaction datasets
-
supplement 1 2-s2.0-33644873184
-
Stark C., Breitkreutz B., Reguly T., Boucher L., Breitkreutz A., Tyers M., BioGRID: a general repository for interaction datasets. Nucleic Acids Research 2006 34 supplement 1 D535 D539 2-s2.0-33644873184
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Stark, C.1
Breitkreutz, B.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Tyers, M.6
-
43
-
-
33846036096
-
The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data
-
DOI 10.1093/nar/gkl971
-
Berman H., Henrick K., Nakamura H., Markley J. L., The worldwide protein data bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Research 2007 35 supplement 1 D301 D303 2-s2.0-33846036096 10.1093/nar/gkl971 (Pubitemid 46056219)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Berman, H.1
Henrick, K.2
Nakamura, H.3
Markley, J.L.4
-
44
-
-
77349091815
-
NetPath: A public resource of curated signal transduction pathways
-
2-s2.0-77349091815 10.1186/gb-2010-11-1-r3 ARTICLE R3
-
Kandasamy K., Mohan S. S., Raju R., Keerthikumar S., Kumar G. S. S., Venugopal A. K., Telikicherla D., Navarro D. J., Mathivanan S., Pecquet C., Gollapudi S. K., Tattikota S. G., Mohan S., Padhukasahasram H., Subbannayya Y., Goel R., Jacob H. K. C., Zhong J., Sekhar R., Nanjappa V., Balakrishnan L., Subbaiah R., Ramachandra Y. L., Abdul Rahiman B., Keshava Prasad T. S., Lin J., Houtman J. C. D., Desiderio S., Renauld J., Constantinescu S., Ohara O., Hirano T., Kubo M., Singh S., Khatri P., Draghici S., Bader G. D., Sander C., Leonard W. J., Pandey A., NetPath: a public resource of curated signal transduction pathways. Genome Biology 2010 11 1, article R3 2-s2.0-77349091815 10.1186/gb-2010-11-1-r3
-
(2010)
Genome Biology
, vol.11
, Issue.1
-
-
Kandasamy, K.1
Mohan, S.S.2
Raju, R.3
Keerthikumar, S.4
Kumar, G.S.S.5
Venugopal, A.K.6
Telikicherla, D.7
Navarro, D.J.8
Mathivanan, S.9
Pecquet, C.10
Gollapudi, S.K.11
Tattikota, S.G.12
Mohan, S.13
Padhukasahasram, H.14
Subbannayya, Y.15
Goel, R.16
Jacob, H.K.C.17
Zhong, J.18
Sekhar, R.19
Nanjappa, V.20
Balakrishnan, L.21
Subbaiah, R.22
Ramachandra, Y.L.23
Abdul Rahiman, B.24
Keshava Prasad, T.S.25
Lin, J.26
Houtman, J.C.D.27
Desiderio, S.28
Renauld, J.29
Constantinescu, S.30
Ohara, O.31
Hirano, T.32
Kubo, M.33
Singh, S.34
Khatri, P.35
Draghici, S.36
Bader, G.D.37
Sander, C.38
Leonard, W.J.39
Pandey, A.40
more..
-
45
-
-
84983633298
-
KNApSAcK: A comprehensive species-metabolite relationship database
-
New York, NY, USA Springer
-
Shinbo Y., Nakamura Y., Altaf-Ul-Amin M., Asahi H., Kurokawa K., Arita M., Saito K., Ohta D., Shibata D., Kanaya S., KNApSAcK: a comprehensive species-metabolite relationship database. Plant Metabolomics 2006 New York, NY, USA Springer 165 181
-
(2006)
Plant Metabolomics
, pp. 165-181
-
-
Shinbo, Y.1
Nakamura, Y.2
Altaf-Ul-Amin, M.3
Asahi, H.4
Kurokawa, K.5
Arita, M.6
Saito, K.7
Ohta, D.8
Shibata, D.9
Kanaya, S.10
-
46
-
-
84857226999
-
KNApSAcK family databases: Integrated metabolite-plant species databases for multifaceted plant research
-
2-s2.0-84857226999 10.1093/pcp/pcr165
-
Afendi F. M., Okada T., Yamazaki M., Hirai-Morita A., Nakamura Y., Nakamura K., Ikeda S., Takahashi H., Altaf-Ul-Amin M., Darusman L. K., Saito K., Kanaya S., KNApSAcK family databases: integrated metabolite-plant species databases for multifaceted plant research. Plant and Cell Physiology 2012 53 2 e1 2-s2.0-84857226999 10.1093/pcp/pcr165
-
(2012)
Plant and Cell Physiology
, vol.53
, Issue.2
-
-
Afendi, F.M.1
Okada, T.2
Yamazaki, M.3
Hirai-Morita, A.4
Nakamura, Y.5
Nakamura, K.6
Ikeda, S.7
Takahashi, H.8
Altaf-Ul-Amin, M.9
Darusman, L.K.10
Saito, K.11
Kanaya, S.12
-
47
-
-
84900015533
-
Data mining methods for omics and knowledge of crude medicinal plants toward big data biology
-
10.5936/csbj.201301010
-
Afendi F. M., Ono N., Nakamura Y., Nakamura K., Darusman L. K., Kibinge N., Morita A. H., Tanaka K., Horai H., Altaf-Ul-Amin M., Kanaya S., Data mining methods for omics and knowledge of crude medicinal plants toward big data biology. Computational and Structural Biotechnology Journal 2013 10.5936/csbj.201301010
-
(2013)
Computational and Structural Biotechnology Journal
-
-
Afendi, F.M.1
Ono, N.2
Nakamura, Y.3
Nakamura, K.4
Darusman, L.K.5
Kibinge, N.6
Morita, A.H.7
Tanaka, K.8
Horai, H.9
Altaf-Ul-Amin, M.10
Kanaya, S.11
-
48
-
-
58149421595
-
Analysis of a complex of statistical variables into principal components
-
2-s2.0-58149421595 10.1037/h0071325
-
Hotelling H., Analysis of a complex of statistical variables into principal components. Journal of Educational Psychology 1933 24 6 417 441 2-s2.0-58149421595 10.1037/h0071325
-
(1933)
Journal of Educational Psychology
, vol.24
, Issue.6
, pp. 417-441
-
-
Hotelling, H.1
-
49
-
-
0032380578
-
Doing least squares: Perspectives from Gauss and Yule
-
Aldrich J., Doing least squares: perspectives from Gauss and Yule. International Statistical Review 1998 66 1 61 81 2-s2.0-0032380578 (Pubitemid 128359890)
-
(1998)
International Statistical Review
, vol.66
, Issue.1
, pp. 61-81
-
-
Aldrich, J.1
-
50
-
-
79952778125
-
Using PLS to investigate interaction effects between higher order branding constructs
-
New York, NY, USA Springer
-
Wilson B., Using PLS to investigate interaction effects between higher order branding constructs. Handbook of Partial Least Squares 2010 New York, NY, USA Springer 621 652
-
(2010)
Handbook of Partial Least Squares
, pp. 621-652
-
-
Wilson, B.1
-
51
-
-
34249753618
-
Support-vector networks
-
2-s2.0-34249753618 10.1007/BF00994018
-
Cortes C., Vapnik V., Support-vector networks. Machine Learning 1995 20 3 273 297 2-s2.0-34249753618 10.1007/BF00994018
-
(1995)
Machine Learning
, vol.20
, Issue.3
, pp. 273-297
-
-
Cortes, C.1
Vapnik, V.2
-
54
-
-
0035478854
-
Random forests
-
DOI 10.1023/A:1010933404324
-
Breiman L., Random forests. Machine Learning 2001 45 1 5 32 2-s2.0-0035478854 10.1023/A:1010933404324 (Pubitemid 32933532)
-
(2001)
Machine Learning
, vol.45
, Issue.1
, pp. 5-32
-
-
Breiman, L.1
-
55
-
-
84867707215
-
A Bootstrapping approach for investigating the consistency of assignment of plants to Jamu efficacy by PLS-DA Model
-
2-s2.0-84867707215
-
Afendi F. M., Darusman L. K., Fukuyama M., Altaf-Ul-Amin M., Kanaya S., A Bootstrapping approach for investigating the consistency of assignment of plants to Jamu efficacy by PLS-DA Model. Malaysian Journal of Mathematical Sciences 2012 6 2 147 164 2-s2.0-84867707215
-
(2012)
Malaysian Journal of Mathematical Sciences
, vol.6
, Issue.2
, pp. 147-164
-
-
Afendi, F.M.1
Darusman, L.K.2
Fukuyama, M.3
Altaf-Ul-Amin, M.4
Kanaya, S.5
-
56
-
-
0000117331
-
SIMCA: A method for analyzing chemical data in terms of similarity and analogy
-
ACS Symposium Series 10.1021/bk-1977-0052.ch012
-
Wold S., Sjöström M., SIMCA: a method for analyzing chemical data in terms of similarity and analogy. Chemometrics: Theory and Application 1977 52 243 282 ACS Symposium Series 10.1021/bk-1977-0052.ch012
-
(1977)
Chemometrics: Theory and Application
, vol.52
, pp. 243-282
-
-
Wold, S.1
Sjöström, M.2
-
57
-
-
0001765146
-
An efficient algorithm for a complete link method
-
Defays D., An efficient algorithm for a complete link method. The Computer Journal 1977 20 4 364 366
-
(1977)
The Computer Journal
, vol.20
, Issue.4
, pp. 364-366
-
-
Defays, D.1
-
58
-
-
0002663098
-
SLINK: An optimally efficient algorithm for the single-link cluster method
-
10.1093/comjnl/16.1.30
-
Sibson R., SLINK: an optimally efficient algorithm for the single-link cluster method. The Computer Journal 1973 16 1 30 34 10.1093/comjnl/16.1.30
-
(1973)
The Computer Journal
, vol.16
, Issue.1
, pp. 30-34
-
-
Sibson, R.1
-
60
-
-
0020068152
-
Self-organized formation of topologically correct feature maps
-
DOI 10.1007/BF00337288
-
Kohonen T., Self-organized formation of topologically correct feature maps. Biological Cybernetics 1982 43 1 59 69 2-s2.0-0020068152 (Pubitemid 12139984)
-
(1982)
Biological Cybernetics
, vol.43
, Issue.1
, pp. 59-69
-
-
Kohonen, T.1
-
61
-
-
0035802405
-
Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): Characterization of horizontally transferred genes with emphasis on the E. Coli O157 genome
-
DOI 10.1016/S0378-1119(01)00673-4, PII S0378111901006734
-
Kanaya S., Kinouchi M., Abe T., Kudo Y., Yamada Y., Nishi T., Mori H., Ikemura T., Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): characterization of horizontally transferred genes with emphasis on the E. coli O157 genome. Gene 2001 276 1-2 89 99 2-s2.0-0035802405 10.1016/S0378-1119(01)00673-4 (Pubitemid 32925263)
-
(2001)
Gene
, vol.276
, Issue.1-2
, pp. 89-99
-
-
Kanaya, S.1
Kinouchi, M.2
Abe, T.3
Kudo, Y.4
Yamada, Y.5
Nishi, T.6
Mori, H.7
Ikemura, T.8
-
62
-
-
79551567038
-
Dynamics of time-lagged gene-to-metabolite networks of Escherichia coli elucidated by integrative omics approach
-
2-s2.0-79551567038 10.1089/omi.2010.0074
-
Takahashi H., Morioka R., Ito R., Oshima T., Altaf-Ul-Amin M., Ogasawara N., Kanaya S., Dynamics of time-lagged gene-to-metabolite networks of Escherichia coli elucidated by integrative omics approach. OMICS: A Journal of Integrative Biology 2011 15 1-2 15 23 2-s2.0-79551567038 10.1089/omi.2010.0074
-
(2011)
OMICS: A Journal of Integrative Biology
, vol.15
, Issue.1-2
, pp. 15-23
-
-
Takahashi, H.1
Morioka, R.2
Ito, R.3
Oshima, T.4
Altaf-Ul-Amin, M.5
Ogasawara, N.6
Kanaya, S.7
-
63
-
-
36248929401
-
Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model
-
DOI 10.1186/1471-2105-8-343
-
Morioka R., Kanaya S., Hirai M. Y., Yano M., Ogasawara N., Saito K., Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model. BMC Bioinformatics 2007 8, article 343 2-s2.0-36248929401 10.1186/1471-2105-8-343 (Pubitemid 350131379)
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 343
-
-
Morioka, R.1
Kanaya, S.2
Hirai, M.Y.3
Yano, M.4
Ogasawara, N.5
Saito, K.6
-
64
-
-
84877977479
-
Systematization of the protein sequence diversity in enzymes related to secondary metabolic pathways in plants, in the context of big data biology inspired by the KNApSAcK motorcycle database
-
2-s2.0-84877977479 10.1093/pcp/pct041
-
Ikeda S., Abe T., Nakamura Y., Kibinge N., Hirai Morita A., Nakatani A., Ono N., Ikemura T., Nakamura K., Altaf-Ul-Amin M., Kanaya S., Systematization of the protein sequence diversity in enzymes related to secondary metabolic pathways in plants, in the context of big data biology inspired by the KNApSAcK motorcycle database. Plant and Cell Physiology 2013 54 5 711 727 2-s2.0-84877977479 10.1093/pcp/pct041
-
(2013)
Plant and Cell Physiology
, vol.54
, Issue.5
, pp. 711-727
-
-
Ikeda, S.1
Abe, T.2
Nakamura, Y.3
Kibinge, N.4
Hirai Morita, A.5
Nakatani, A.6
Ono, N.7
Ikemura, T.8
Nakamura, K.9
Altaf-Ul-Amin, M.10
Kanaya, S.11
-
66
-
-
0000488788
-
Network structure and minimum degree
-
2-s2.0-0000488788
-
Seidman S. B., Network structure and minimum degree. Social Networks 1983 5 3 269 287 2-s2.0-0000488788
-
(1983)
Social Networks
, vol.5
, Issue.3
, pp. 269-287
-
-
Seidman, S.B.1
-
67
-
-
84958977543
-
Graph clustering using distance-k cliques
-
New York, NY, USA Springer
-
Edachery J., Sen A., Brandenburg F. J., Graph clustering using distance-k cliques. Graph Drawing 1999 New York, NY, USA Springer 98 106
-
(1999)
Graph Drawing
, pp. 98-106
-
-
Edachery, J.1
Sen, A.2
Brandenburg, F.J.3
-
68
-
-
0007792193
-
K-Components, clusters and slicings in graphs
-
10.1137/0122040
-
Matula D. W., k-Components, clusters and slicings in graphs. SIAM Journal on Applied Mathematics 1972 22 3 459 480 10.1137/0122040
-
(1972)
SIAM Journal on Applied Mathematics
, vol.22
, Issue.3
, pp. 459-480
-
-
Matula, D.W.1
-
69
-
-
33744805096
-
Development and implementation of an algorithm for detection of protein complexes in large interaction networks
-
DOI 10.1186/1471-2105-7-207
-
Altaf-Ul-Amin M., Shinbo Y., Mihara K., Kurokawa K., Kanaya S., Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinformatics 2006 7, article 207 2-s2.0-33744805096 10.1186/1471-2105-7-207 (Pubitemid 43833590)
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 207
-
-
Altaf-Ul-Amin, Md.1
Shinbo, Y.2
Mihara, K.3
Kurokawa, K.4
Kanaya, S.5
-
72
-
-
84899526605
-
Partitioning a PPI network into overlapping modules constrained by high-density and periphery tracking
-
726429 10.5402/2012/726429
-
Altaf-Ul-Amin M., Wada M., Kanaya S., Partitioning a PPI network into overlapping modules constrained by high-density and periphery tracking. ISRN Biomathematics 2012 2012 11 726429 10.5402/2012/726429
-
(2012)
ISRN Biomathematics
, vol.2012
, pp. 11
-
-
Altaf-Ul-Amin, M.1
Wada, M.2
Kanaya, S.3
-
73
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
2-s2.0-0037566556
-
Bader G. D., Hogue C. W. V., An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 2003 4, article 2 2-s2.0-0037566556
-
(2003)
BMC Bioinformatics
, vol.42
-
-
Bader, G.D.1
Hogue, C.W.V.2
-
74
-
-
67649518162
-
A core-attachment based method to detect protein complexes in PPI networks
-
2-s2.0-67649518162 10.1186/1471-2105-10-169 10169
-
Wu M., Li X., Kwoh C. K., Ng S. K., A core-attachment based method to detect protein complexes in PPI networks. BMC Bioinformatics 2009 10, article 169 2-s2.0-67649518162 10.1186/1471-2105-10-169
-
(2009)
BMC Bioinformatics
-
-
Wu, M.1
Li, X.2
Kwoh, C.K.3
Ng, S.K.4
-
75
-
-
59649099220
-
Predicting protein complexes from PPI data: A core-attachment approach
-
2-s2.0-59649099220 10.1089/cmb.2008.01TT
-
Leung H. C. M., Xiang Q., Yiu S. M., Chin F. Y. L., Predicting protein complexes from PPI data: a core-attachment approach. Journal of Computational Biology 2009 16 2 133 144 2-s2.0-59649099220 10.1089/cmb.2008.01TT
-
(2009)
Journal of Computational Biology
, vol.16
, Issue.2
, pp. 133-144
-
-
Leung, H.C.M.1
Xiang, Q.2
Yiu, S.M.3
Chin, F.Y.L.4
-
77
-
-
76349102363
-
Predicting conformation of protein complexes by determining statistically significant domain-domain interactions
-
2-s2.0-76349102363
-
Nishikata K., Wada M., Takahashi H., Nakamura K., Kanaya S., Altaf-Ul-Amin M., Predicting conformation of protein complexes by determining statistically significant domain-domain interactions. Plant Biotechnology 2009 26 5 495 501 2-s2.0-76349102363
-
(2009)
Plant Biotechnology
, vol.26
, Issue.5
, pp. 495-501
-
-
Nishikata, K.1
Wada, M.2
Takahashi, H.3
Nakamura, K.4
Kanaya, S.5
Altaf-Ul-Amin, M.6
-
78
-
-
0036799752
-
Inferring domain-domain interactions from protein-protein interactions
-
DOI 10.1101/gr.153002
-
Deng M., Mehta S., Sun F., Chen T., Inferring domain-domain interactions from protein-protein interactions. Genome Research 2002 12 10 1540 1548 2-s2.0-0036799752 10.1101/gr.153002 (Pubitemid 35175092)
-
(2002)
Genome Research
, vol.12
, Issue.10
, pp. 1540-1548
-
-
Deng, M.1
Mehta, S.2
Sun, F.3
Chen, T.4
-
79
-
-
3442886313
-
PathBLAST: A tool for alignment of protein interaction networks
-
DOI 10.1093/nar/gkh411 WEB SERVER ISS.
-
Kelley B. P., Yuan B., Lewitter F., Sharan R., Stockwell B. R., Ideker T., PathBLAST: a tool for alignment of protein interaction networks. Nucleic Acids Research 2004 32 supplement 2 W83 W88 2-s2.0-3442886313 10.1093/nar/gkh411 (Pubitemid 39004074)
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Kelley, B.P.1
Yuan, B.2
Lewitter, F.3
Sharan, R.4
Stockwell, B.R.5
Ideker, T.6
-
80
-
-
23844494458
-
Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis
-
DOI 10.1038/nature03876
-
Gunsalus K. C., Ge H., Schetter A. J., Goldberg D. S., Han J. D. J., Hao T., Berriz G. F., Bertin N., Huang J., Chuang L., Li N., Mani R., Hyman A. A., Sönnichsen B., Echeverri C. J., Roth F. P., Vidal M., Piano F., Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis. Nature 2005 436 7052 861 865 2-s2.0-23844494458 10.1038/nature03876 (Pubitemid 41160646)
-
(2005)
Nature
, vol.436
, Issue.7052
, pp. 861-865
-
-
Gunsalus, K.C.1
Ge, H.2
Schetter, A.J.3
Goldberg, D.S.4
Han, J.-D.J.5
Hao, T.6
Berriz, G.F.7
Bertin, N.8
Huang, J.9
Chuang, L.-S.10
Li, N.11
Mani, R.12
Hyman, A.A.13
Sonnichsen, B.14
Echeverri, C.J.15
Roth, F.P.16
Vidal, M.17
Piano, F.18
-
81
-
-
84886533673
-
Integrative analysis of secondary metabolism and transcript regulation in Arabidopsis thaliana
-
Matsuda F., Saito K., Integrative analysis of secondary metabolism and transcript regulation in Arabidopsis thaliana. The Handbook of Plant Metabolomics 175 195
-
The Handbook of Plant Metabolomics
, pp. 175-195
-
-
Matsuda, F.1
Saito, K.2
-
82
-
-
28444460297
-
Global analysis of protein phosphorylation in yeast
-
DOI 10.1038/nature04187
-
Ptacek J., Devgan G., Michaud G., Zhu H., Zhu X., Fasolo J., Guo H., Jona G., Breitkreutz A., Sopko R., McCartney R. R., Schmidt M. C., Rachidi N., Lee S., Mah A. S., Meng L., Stark M. J. R., Stern D. F., de Virgilio C., Tyers M., Andrews B., Gerstein M., Schweitzer B., Predki P. F., Snyder M., Global analysis of protein phosphorylation in yeast. Nature 2005 438 7068 679 684 2-s2.0-28444460297 10.1038/nature04187 (Pubitemid 41740579)
-
(2005)
Nature
, vol.438
, Issue.7068
, pp. 679-684
-
-
Ptacek, J.1
Devgan, G.2
Michaud, G.3
Zhu, H.4
Zhu, X.5
Fasolo, J.6
Guo, H.7
Jona, G.8
Breitkreutz, A.9
Sopko, R.10
McCartney, R.R.11
Schmidt, M.C.12
Rachidi, N.13
Lee, S.-J.14
Mah, A.S.15
Meng, L.16
Stark, M.J.R.17
Stern, D.F.18
De Virgilio, C.19
Tyers, M.20
Andrews, B.21
Gerstein, M.22
Schweitzer, B.23
Predki, P.F.24
Snyder, M.25
more..
-
83
-
-
0034721164
-
Error and attack tolerance of complex networks
-
DOI 10.1038/35019019
-
Albert R., Jeong H., Barabási A. L., Error and attack tolerance of complex networks. Nature 2000 406 6794 378 382 2-s2.0-0035945558 (Pubitemid 30625551)
-
(2000)
Nature
, vol.406
, Issue.6794
, pp. 378-382
-
-
Albert, R.1
Jeong, H.2
Barabasi, A.-L.3
-
84
-
-
0035799707
-
Lethality and centrality in protein networks
-
DOI 10.1038/35075138
-
Jeong H., Mason S. P., Barabási A. L., Oltvai Z. N., Lethality and centrality in protein networks. Nature 2001 411 6833 41 42 2-s2.0-0035799707 10.1038/35075138 (Pubitemid 32428180)
-
(2001)
Nature
, vol.411
, Issue.6833
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.-L.3
Oltvai, Z.N.4
-
85
-
-
33746674977
-
Exploration of biological network centralities with CentiBiN
-
DOI 10.1186/1471-2105-7-219
-
Junker B. H., Koschützki D., Schreiber F., Exploration of biological network centralities with CentiBiN. BMC Bioinformatics 2006 7, article 219 2-s2.0-33746674977 10.1186/1471-2105-7-219 (Pubitemid 44164727)
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 219
-
-
Junker, B.H.1
Koschutzki, D.2
Schreiber, F.3
-
86
-
-
62849126285
-
Disease candidate gene identification and prioritization using protein interaction networks
-
2-s2.0-62849126285 10.1186/1471-2105-10-73
-
Chen J., Aronow B. J., Jegga A. G., Disease candidate gene identification and prioritization using protein interaction networks. BMC Bioinformatics 2009 10, article 73 2-s2.0-62849126285 10.1186/1471-2105-10-73
-
(2009)
BMC Bioinformatics
, vol.1073
-
-
Chen, J.1
Aronow, B.J.2
Jegga, A.G.3
-
87
-
-
66149156998
-
Discovery and scoring of protein interaction subnetworks discriminative of late stage human colon cancer
-
2-s2.0-66149156998 10.1074/mcp.M800428-MCP200
-
Nibbe R. K., Markowitz S., Myeroff L., Ewing R., Chance M. R., Discovery and scoring of protein interaction subnetworks discriminative of late stage human colon cancer. Molecular & Cellular Proteomics 2009 8 4 827 845 2-s2.0-66149156998 10.1074/mcp.M800428-MCP200
-
(2009)
Molecular & Cellular Proteomics
, vol.8
, Issue.4
, pp. 827-845
-
-
Nibbe, R.K.1
Markowitz, S.2
Myeroff, L.3
Ewing, R.4
Chance, M.R.5
-
88
-
-
76749148657
-
An integrative-omics approach to identify functional sub-networks in human colorectal cancer
-
2-s2.0-76749148657 10.1371/journal.pcbi.1000639 1000639
-
Nibbe R. K., Koyutü M., Chance M. R., An integrative-omics approach to identify functional sub-networks in human colorectal cancer. PLoS Computational Biology 2010 6 1 2-s2.0-76749148657 10.1371/journal.pcbi.1000639 1000639
-
(2010)
PLoS Computational Biology
, vol.6
, Issue.1
-
-
Nibbe, R.K.1
Koyutü, M.2
Chance, M.R.3
-
89
-
-
34548648044
-
Assessment of the progression of Parkinson's disease: A metabolic network approach
-
DOI 10.1016/S1474-4422(07)70245-4, PII S1474442207702454
-
Eckert T., Tang C., Eidelberg D., Assessment of the progression of Parkinson's disease: a metabolic network approach. The Lancet Neurology 2007 6 10 926 932 2-s2.0-34548648044 10.1016/S1474-4422(07)70245-4 (Pubitemid 47405003)
-
(2007)
Lancet Neurology
, vol.6
, Issue.10
, pp. 926-932
-
-
Eckert, T.1
Tang, C.2
Eidelberg, D.3
-
90
-
-
84863087650
-
Rational drug repositioning guided by an integrated pharmacological network of protein, disease and drug
-
2-s2.0-84863087650 10.1186/1752-0509-6-80
-
Lee H. S., Bae T., Lee J. H., Kim D. G., Oh Y. S., Jang Y., Kim J. T., Lee J. J., Innocenti A., Supuran C. T., Chen L., Rho K., Kim S., Rational drug repositioning guided by an integrated pharmacological network of protein, disease and drug. BMC Systems Biology 2012 6, article 80 2-s2.0-84863087650 10.1186/1752-0509-6-80
-
(2012)
BMC Systems Biology
, vol.680
-
-
Lee, H.S.1
Bae, T.2
Lee, J.H.3
Kim, D.G.4
Oh, Y.S.5
Jang, Y.6
Kim, J.T.7
Lee, J.J.8
Innocenti, A.9
Supuran, C.T.10
Chen, L.11
Rho, K.12
Kim, S.13
-
91
-
-
68449088145
-
Human disease-drug network based on genomic expression profiles
-
2-s2.0-68449088145 10.1371/journal.pone.0006536 e6536
-
Hu G., Agarwal P., Human disease-drug network based on genomic expression profiles. PLoS ONE 2009 4 8 2-s2.0-68449088145 10.1371/journal.pone.0006536 e6536
-
(2009)
PLoS ONE
, vol.4
, Issue.8
-
-
Hu, G.1
Agarwal, P.2
-
92
-
-
79958754253
-
PREDICT: A method for inferring novel drug indications with application to personalized medicine
-
2-s2.0-79958754253 10.1038/msb.2011.26
-
Gottlieb A., Stein G. Y., Ruppin E., Sharan R., PREDICT: a method for inferring novel drug indications with application to personalized medicine. Molecular Systems Biology 2011 7, article 496 2-s2.0-79958754253 10.1038/msb.2011.26
-
(2011)
Molecular Systems Biology
, vol.7496
-
-
Gottlieb, A.1
Stein, G.Y.2
Ruppin, E.3
Sharan, R.4
-
93
-
-
77955628292
-
Network-based relating pharmacological and genomic spaces for drug target identification
-
2-s2.0-77955628292 10.1371/journal.pone.0011764 e11764
-
Zhao S., Li S., Network-based relating pharmacological and genomic spaces for drug target identification. PLoS ONE 2010 5 7 2-s2.0-77955628292 10.1371/journal.pone.0011764 e11764
-
(2010)
PLoS ONE
, vol.5
, Issue.7
-
-
Zhao, S.1
Li, S.2
-
94
-
-
84875992866
-
Systematic prediction of pharmacodynamic drug-drug interactions through protein-protein-interaction network
-
2-s2.0-84875992866 10.1371/journal.pcbi.1002998 e1002998
-
Huang J., Niu C., Green C. D., Yang L., Mei H., Han J. D. J., Systematic prediction of pharmacodynamic drug-drug interactions through protein-protein-interaction network. PLoS Computational Biology 2013 9 3 2-s2.0-84875992866 10.1371/journal.pcbi.1002998 e1002998
-
(2013)
PLoS Computational Biology
, vol.9
, Issue.3
-
-
Huang, J.1
Niu, C.2
Green, C.D.3
Yang, L.4
Mei, H.5
Han, J.D.J.6
-
95
-
-
74049124545
-
Exploring biological network structure with clustered random networks
-
2-s2.0-74049124545 10.1186/1471-2105-10-405 10405
-
Bansal S., Khandelwal S., Meyers L. A., Exploring biological network structure with clustered random networks. BMC Bioinformatics 2009 10, article 405 2-s2.0-74049124545 10.1186/1471-2105-10-405
-
(2009)
BMC Bioinformatics
-
-
Bansal, S.1
Khandelwal, S.2
Meyers, L.A.3
-
96
-
-
4644326931
-
Genomic analysis of regulatory network dynamics reveals large topological changes
-
DOI 10.1038/nature02782
-
Luscombe N. M., Babu M. M., Yu H., Snyder M., Teichmann S. A., Gerstein M., Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 2004 431 7006 308 312 2-s2.0-4644326931 10.1038/nature02782 (Pubitemid 39265665)
-
(2004)
Nature
, vol.431
, Issue.7006
, pp. 308-312
-
-
Luscombe, N.M.1
Babu, M.M.2
Yu, H.3
Snyder, M.4
Teichmann, S.A.5
Gerstein, M.6
-
97
-
-
78651512420
-
GraphCrunch 2: Software tool for network modeling, alignment and clustering
-
2-s2.0-78651512420 10.1186/1471-2105-12-24
-
Kuchaiev O., Stevanović A., Hayes W., Pržulj N., GraphCrunch 2: software tool for network modeling, alignment and clustering. BMC Bioinformatics 2011 12, article 24 2-s2.0-78651512420 10.1186/1471-2105-12-24
-
(2011)
BMC Bioinformatics
, vol.1224
-
-
Kuchaiev, O.1
Stevanović, A.2
Hayes, W.3
Pržulj, N.4
-
98
-
-
12344273375
-
Modeling interactome: Scale-free or geometric?
-
DOI 10.1093/bioinformatics/bth436
-
Pržulj N., Corneil D. G., Jurisica I., Modeling interactome: scale-free or geometric? Bioinformatics 2004 20 18 3508 3515 2-s2.0-12344273375 10.1093/bioinformatics/bth436 (Pubitemid 40136786)
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3508-3515
-
-
Przulj, N.1
Corneil, D.G.2
Jurisica, I.3
-
99
-
-
0037174670
-
Network motifs: Simple building blocks of complex networks
-
DOI 10.1126/science.298.5594.824
-
Milo R., Shen-Orr S., Itzkovitz S., Kashtan N., Chklovskii D., Alon U., Network motifs: simple building blocks of complex networks. Science 2002 298 5594 824 827 2-s2.0-0037174670 10.1126/science.298.5594.824 (Pubitemid 35231534)
-
(2002)
Science
, vol.298
, Issue.5594
, pp. 824-827
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
Alon, U.6
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