메뉴 건너뛰기




Volumn 3, Issue 4, 2012, Pages e201210012-

Analyzing the genomic variation of microbial cell factories in the era of "New Biotechnology"

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84902162689     PISSN: None     EISSN: 20010370     Source Type: Journal    
DOI: 10.5936/csbj.201210012     Document Type: Short Survey
Times cited : (8)

References (45)
  • 2
    • 79959555482 scopus 로고    scopus 로고
    • Functional and metabolic effects of adaptive glycerol kinase (glpk) mutants in escherichia coli
    • Applebee, M.K., Joyce, A.R., Conrad, T.M., Pettigrew, D.W., and Palsson, B.O. (2011). Functional and metabolic effects of adaptive glycerol kinase (GLPK) mutants in Escherichia coli. J. Biol. Chem. 286, 23150-23159.
    • (2011) J. Biol. Chem. , vol.286 , pp. 23150-23159
    • Applebee, M.K.1    Joyce, A.R.2    Conrad, T.M.3    Pettigrew, D.W.4    Palsson, B.O.5
  • 6
    • 3242726864 scopus 로고    scopus 로고
    • Impact of 'ome' analyses on inverse metabolic engineering
    • DOI 10.1016/j.ymben.2003.11.005, PII S1096717604000163
    • Bro, C, and Nielsen, J. (2004). Impact of "ome" analyses on inverse metabolic engineering. Metab. Eng. 6, 204-211. (Pubitemid 38946638)
    • (2004) Metabolic Engineering , vol.6 , Issue.3 , pp. 204-211
    • Bro, C.1    Nielsen, J.2
  • 9
    • 79960104605 scopus 로고    scopus 로고
    • Microbial laboratory evolution in the era of genome-scale science
    • Conrad, T.M., Lewis, N.E., and Palsson, B.O. (2011). Microbial laboratory evolution in the era of genome-scale science. Mol. Syst. Biol. 7, 509.
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 509
    • Conrad, T.M.1    Lewis, N.E.2    Palsson, B.O.3
  • 11
    • 0038441327 scopus 로고    scopus 로고
    • Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation
    • DOI 10.1038/nrg1088
    • Elena, S.F., and Lenski, R.E. (2003). Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4, 457-469. (Pubitemid 36648145)
    • (2003) Nature Reviews Genetics , vol.4 , Issue.6 , pp. 457-469
    • Elena, S.F.1    Lenski, R.E.2
  • 12
    • 25844495901 scopus 로고    scopus 로고
    • Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
    • DOI 10.1101/gr.3832305
    • Fong, S.S., Joyce, A.R., and Palsson, B.O. (2005). Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. Genome Res. 15, 1365-1372. (Pubitemid 41400902)
    • (2005) Genome Research , vol.15 , Issue.10 , pp. 1365-1372
    • Fong, S.S.1    Joyce, A.R.2    Palsson, B.O.3
  • 13
    • 79957983166 scopus 로고    scopus 로고
    • Integrated genome-scale prediction of detrimental mutations in transcription networks
    • Francesconi, M., Jelier, R., and Lehner, B. (2011). Integrated genome-scale prediction of detrimental mutations in transcription networks. PLoS Genet. 7, el002077.
    • (2011) PLoS Genet. , vol.7
    • Francesconi, M.1    Jelier, R.2    Lehner, B.3
  • 16
    • 79961072482 scopus 로고    scopus 로고
    • Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis
    • Hong, K.-K., Vongsangnak, W., Vemuri, G.N., and Nielsen, J. (2011). Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis. Proc. Natl. Acad. Sci. U.S.A. 108, 12179-12184.
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 12179-12184
    • Hong, K.-K.1    Vongsangnak, W.2    Vemuri, G.N.3    Nielsen, J.4
  • 18
    • 0037079023 scopus 로고    scopus 로고
    • Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
    • DOI 10.1038/nature01149
    • Ibarra, R.U., Edwards, J.S., and Palsson, B.O. (2002). Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. Nature 420, 186-189. (Pubitemid 35340123)
    • (2002) Nature , vol.420 , Issue.6912 , pp. 186-189
    • Ibarra, R.U.1    Edwards, J.S.2    Palsson, B.O.3
  • 19
    • 82255186724 scopus 로고    scopus 로고
    • Predicting phenotypic variation in yeast from individual genome sequences
    • Jelier, R., Semple, J.I., Garcia-Verdugo, R., and Lehner, B. (2011). Predicting phenotypic variation in yeast from individual genome sequences. Nat. Genet. 43, 1270-1274.
    • (2011) Nat. Genet. , vol.43 , pp. 1270-1274
    • Jelier, R.1    Semple, J.I.2    Garcia-Verdugo, R.3    Lehner, B.4
  • 20
    • 53649101617 scopus 로고    scopus 로고
    • What would you do if you could sequence everything? Nat
    • Kahvejian, A., Quackenbush, J., and Thompson, J.F. (2008). What would you do if you could sequence everything? Nat. Biotechnol. 26, 1125-1133.
    • (2008) Biotechnol. , vol.26 , pp. 1125-1133
    • Kahvejian, A.1    Quackenbush, J.2    Thompson, J.F.3
  • 22
    • 85148990236 scopus 로고    scopus 로고
    • Dynamic analysis of integrated signaling, metabolic, and regulatory networks
    • Lee, J.M., Gianchandani, E.P., Eddy, J.A., Papin, J.A. (2008). Dynamic analysis of integrated signaling, metabolic, and regulatory networks. PLoS Comput. Biol. 23;4:el000086.
    • (2008) PLoS Comput. Biol. , vol.23 , Issue.4
    • Lee, J.M.1    Gianchandani, E.P.2    Eddy, J.A.3    Papin, J.A.4
  • 23
    • 77954265373 scopus 로고    scopus 로고
    • Adaptive evolution of escherichia coli k-12 mg1655 during growth on a nonnative carbon source, l-1,2-propanediol
    • Lee, D.-H., and Palsson, B.O. (2010). Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a Nonnative carbon source, L-1,2-propanediol. Appl. Environ. Microbiol. 76, 4158-4168.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 4158-4168
    • Lee, D.-H.1    Palsson, B.O.2
  • 26
    • 84858439602 scopus 로고    scopus 로고
    • Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods
    • Lewis, N.E., Nagarajan, H., and Palsson, B.O. (2012). Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. Nat. Rev. Microbiol. 10, 291-305.
    • (2012) Nat. Rev. Microbiol. , vol.10 , pp. 291-305
    • Lewis, N.E.1    Nagarajan, H.2    Palsson, B.O.3
  • 27
    • 79952806663 scopus 로고    scopus 로고
    • Linking genotype and phenotype of saccharomyces cerevisiae strains reveals metabolic engineering targets and leads to triterpene hyper-producers
    • Madsen, K.M., Udatha, G.D.B.R.K., Semba, S., Otero, J.M., Koetter, P., Nielsen, J., Ebizuka, Y., Kushiro, T., and Panagiotou, G. (2011). Linking genotype and phenotype of Saccharomyces cerevisiae strains reveals metabolic engineering targets and leads to triterpene hyper-producers. PLoS ONE 6, el4763.
    • (2011) PLoS ONE , vol.6
    • Madsen, K.M.1    Udatha, G.D.B.R.K.2    Semba, S.3    Otero, J.M.4    Koetter, P.5    Nielsen, J.6    Ebizuka, Y.7    Kushiro, T.8    Panagiotou, G.9
  • 28
    • 53649088131 scopus 로고    scopus 로고
    • Applications of next-generation sequencing technologies in functional genomics
    • Morozova, O., and Marra, M.A. (2008). Applications of next-generation sequencing technologies in functional genomics. Genomics 92, 255-264.
    • (2008) Genomics , vol.92 , pp. 255-264
    • Morozova, O.1    Marra, M.A.2
  • 29
    • 84858729135 scopus 로고    scopus 로고
    • De novo sequencing, assembly and analysis of the genome of the laboratory strain saccharomyces cerevisiae cen. Pk113-7d, a model for modern industrial biotechnology
    • Nijkamp JF, van den Broek M, Datema E, de Kok S, Bosnian L, et al. (2012) De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology. Microb Cell Fact 11: 36.
    • (2012) Microb Cell Fact , vol.11 , pp. 36
    • Nijkamp, J.F.1    Van Den Broek, M.2    Datema, E.3    De Kok, S.4    Bosnian, L.5
  • 31
    • 84857061668 scopus 로고    scopus 로고
    • Genome-wide analytical approaches for reverse metabolic engineering of industrially relevant phenotypes in yeast
    • Oud, B., van Maris, A.J.A., Daran, J.-M., and Pronk, J.T. (2012). Genome-wide analytical approaches for reverse metabolic engineering of industrially relevant phenotypes in yeast. FEMS Yeast Res. 12, 183-196.
    • (2012) FEMS Yeast Res. , vol.12 , pp. 183-196
    • Oud, B.1    Van Maris, A.J.A.2    Daran, J.-M.3    Pronk, J.T.4
  • 32
    • 38949178112 scopus 로고    scopus 로고
    • Engineering complex phenotypes in industrial strains
    • DOI 10.1021/bp0701214
    • Patnaik, R. (2008). Engineering complex phenotypes in industrial strains. Biotechnol. Prog. 24, 38-47. (Pubitemid 351231248)
    • (2008) Biotechnology Progress , vol.24 , Issue.1 , pp. 38-47
    • Patnaik, R.1
  • 35
    • 0035232377 scopus 로고    scopus 로고
    • Evolutionary engineering of industrially important microbial phenotypes
    • Sauer, U. (2001). Evolutionary engineering of industrially important microbial phenotypes. Adv. Biochem. Eng. Biotechnol. 73, 129-169.
    • (2001) Adv. Biochem. Eng. Biotechnol. , vol.73 , pp. 129-169
    • Sauer, U.1
  • 36
    • 82355185823 scopus 로고    scopus 로고
    • Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of clostridium thermocellum
    • Shao, X., Raman, B., Zhu, M., Mielenz, J.R., Brown, S.D., Guss, A.M., and Lynd, L.R. (2011). Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum. Appl. Microbiol. Biotechnol. 92, 641-652.
    • (2011) Appl. Microbiol. Biotechnol. , vol.92 , pp. 641-652
    • Shao, X.1    Raman, B.2    Zhu, M.3    Mielenz, J.R.4    Brown, S.D.5    Guss, A.M.6    Lynd, L.R.7
  • 37
    • 3242892121 scopus 로고    scopus 로고
    • Development of a high throughput screening method to test flavour-forming capabilities of anaerobic micro-organisms
    • DOI 10.1111/j.1365-2672.2004.02295.x
    • Smit, B.A., Engels, W.J.M., Bruinsma, J., van Hylckama Vlieg, J.E.T., Wouters, J.T.M., and Smit, G. (2004). Development of a high throughput screening method to test flavour-forming capabilities of anaerobic micro-organisms. J. Appl. Microbiol. 97, 306-313. (Pubitemid 38998661)
    • (2004) Journal of Applied Microbiology , vol.97 , Issue.2 , pp. 306-313
    • Smit, B.A.1    Engels, W.J.M.2    Bruinsma, J.3    Van Hylckama Vlieg, J.E.T.4    Wouters, J.T.M.5    Smit, G.6
  • 38
    • 80555150662 scopus 로고    scopus 로고
    • An evolutionary strategy for isobutanol production strain development in escherichia coli
    • Smith, K.M., and Liao, J.C. (2011). An evolutionary strategy for isobutanol production strain development in Escherichia coli. Metab. Eng. 13, 674-681.
    • (2011) Metab. Eng. , vol.13 , pp. 674-681
    • Smith, K.M.1    Liao, J.C.2
  • 39
    • 84859911840 scopus 로고    scopus 로고
    • Laboratory evolution of geobacter sulfurreducens for enhanced growth on lactate via a single-base-pair substitution in a transcriptional regulator
    • Summers, Z.M., Ueki, T., Ismail, W., Haveman, S.A., and Lovley, D.R. (2012). Laboratory evolution of Geobacter sulfurreducens for enhanced growth on lactate via a single-base-pair substitution in a transcriptional regulator. ISME J 6, 975-983.
    • (2012) ISME J , vol.6 , pp. 975-983
    • Summers, Z.M.1    Ueki, T.2    Ismail, W.3    Haveman, S.A.4    Lovley, D.R.5
  • 41
    • 84866975246 scopus 로고    scopus 로고
    • Multiscale modeling of metabolism and macromolecular synthesis in e. Coli and its application to the evolution of codon usage
    • Thiele, I., Fleming, R.M., Que, R., Bordbar, A., Diep, D., Palsson, B.O. (2012). Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage. PLoS One. 7: e45635.
    • (2012) PLoS One , vol.7
    • Thiele, I.1    Fleming, R.M.2    Que, R.3    Bordbar, A.4    Diep, D.5    Palsson, B.O.6
  • 42
    • 33847073370 scopus 로고    scopus 로고
    • Expanding the metabolic engineering toolbox: More options to engineer cells
    • DOI 10.1016/j.tibtech.2007.01.003, PII S0167779907000194
    • Tyo, K.E., Alper, H.S., and Stephanopoulos, G.N. (2007). Expanding the metabolic engineering toolbox: more options to engineer cells. Trends Biotechnol. 25, 132-137. (Pubitemid 46273753)
    • (2007) Trends in Biotechnology , vol.25 , Issue.3 , pp. 132-137
    • Tyo, K.E.1    Alper, H.S.2    Stephanopoulos, G.N.3
  • 43
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang, H.H., Isaacs, F.J., Carr, P.A., Sun, Z.Z., Xu, G., Forest, C.R., and Church, G.M. (2009). Programming cells by multiplex genome engineering and accelerated evolution. Nature 460, 894-898.
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1    Isaacs, F.J.2    Carr, P.A.3    Sun, Z.Z.4    Xu, G.5    Forest, C.R.6    Church, G.M.7
  • 44
    • 66749161542 scopus 로고    scopus 로고
    • Genomics enabled approaches in strain engineering
    • Warner, J.R., Patnaik, R., and Gill, R.T. (2009). Genomics enabled approaches in strain engineering. Curr. Opin. Microbiol. 12, 223-230.
    • (2009) Curr. Opin. Microbiol. , vol.12 , pp. 223-230
    • Warner, J.R.1    Patnaik, R.2    Gill, R.T.3
  • 45
    • 79959913313 scopus 로고    scopus 로고
    • Biosensors and their applications in microbial metabolic engineering
    • Zhang, F., and Keasling, J. (2011). Biosensors and their applications in microbial metabolic engineering. Trends Microbiol. 19, 323-329.
    • (2011) Trends Microbiol. , vol.19 , pp. 323-329
    • Zhang, F.1    Keasling, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.