-
1
-
-
0028241295
-
Ochratoxin A production by strains of Aspergillus niger var. niger
-
Abarca ML, Bragulat MR, Castella G, Cabanes FJ. 1994. Ochratoxin A production by strains of Aspergillus niger var. niger. Appl Environ Microbiol 60: 2650-2652. (Pubitemid 24205774)
-
(1994)
Applied and Environmental Microbiology
, vol.60
, Issue.7
, pp. 2650-2652
-
-
Abarca, M.L.1
Bragulat, M.R.2
Castella, G.3
Cabanes, F.J.4
-
2
-
-
33745626459
-
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
-
DOI 10.1093/bioinformatics/btl140
-
Alexa A, Rahnenführer J, Lengauer T. 2006. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics 22: 1600-1607. (Pubitemid 43985293)
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1600-1607
-
-
Alexa, A.1
Rahnenfuhrer, J.2
Lengauer, T.3
-
3
-
-
41149105489
-
Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger
-
DOI 10.1038/msb.2008.12, PII MSB200812
-
Andersen MR, Nielsen M, Nielsen J. 2008a. Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger. Mol Syst Biol 4: 178. doi: 10.1038/msb.2008.12. (Pubitemid 351441042)
-
(2008)
Molecular Systems Biology
, vol.4
, pp. 178
-
-
Andersen, M.R.1
Nielsen, M.L.2
Nielsen, J.3
-
4
-
-
41949120307
-
A trispecies Aspergillus microarray: Comparative transcriptomics of three Aspergillus species
-
DOI 10.1073/pnas.0709964105
-
Andersen MR, Vongsangnak W, Panagiotou G, Salazar M, Lehmann L, Nielsen J. 2008b. A tri-species Aspergillus micro array: Comparative transcriptomics of three Aspergillus species. Proc Natl Acad Sci 105: 4387-4392. (Pubitemid 351754390)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.11
, pp. 4387-4392
-
-
Andersen, M.R.1
Vongsangnak, W.2
Panagiotou, G.3
Salazar, M.P.4
Lehmann, L.5
Nielsen, J.6
-
5
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
DOI 10.1126/science.1072104
-
Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S, Smit A, et al. 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297: 1301-1310. (Pubitemid 34913162)
-
(2002)
Science
, vol.297
, Issue.5585
, pp. 1301-1310
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
Putnam, N.4
Chia, J.-M.5
Dehal, P.6
Christoffels, A.7
Rash, S.8
Hoon, S.9
Smit, A.10
Sollewijn, G.M.D.11
Roach, J.12
Oh, T.13
Ho, I.Y.14
Wong, M.15
Detter, C.16
Verhoef, F.17
Predki, P.18
Tay, A.19
Lucas, S.20
Richardson, P.21
Smith, S.F.22
Clark, M.S.23
Edwards, Y.J.K.24
Doggett, N.25
Zharkikh, A.26
Tavtigian, S.V.27
Pruss, D.28
Barnstead, M.29
Evans, C.30
Baden, H.31
Powell, J.32
Glusman, G.33
Rowen, L.34
Hood, L.35
Tan, Y.H.36
Elgar, G.37
Hawkins, T.38
Venkatesh, B.39
Rokhsar, D.40
Brenner, S.41
more..
-
6
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
DOI 10.1038/75556
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. 2000. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29. (Pubitemid 30257031)
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
7
-
-
33749519986
-
Aspergillus niger genomics: Past, present and into the future
-
Baker SE. 2006. Aspergillus niger genomics: Past, present and into the future. Med Mycol (Suppl 1) 44: S17-S21.
-
(2006)
Med Mycol
, vol.44
, Issue.SUPPL. 1
-
-
Baker, S.E.1
-
8
-
-
0034098730
-
Using GeneWise in the Drosophila annotation experiment
-
DOI 10.1101/gr.10.4.547
-
Birney E, Durbin R. 2000. Using GeneWise in the Drosophila annotation experiment. Genome Res 10: 547-548. (Pubitemid 30259086)
-
(2000)
Genome Research
, vol.10
, Issue.4
, pp. 547-548
-
-
Birney, E.1
Durbin, R.2
-
9
-
-
0024395638
-
Adenine and pyrimidine genes of Aspergillus niger and evidence for a seventh linkage group
-
DOI 10.1007/BF00422118
-
Bos CJ, Debets AJ, Kobus G, Slakhorst SM, Swart K. 1989. Adenine and pyrimidine genes of Aspergillus niger and evidence for a seventh linkage group. Curr Genet 16: 307-310. (Pubitemid 20000963)
-
(1989)
Current Genetics
, vol.16
, Issue.4
, pp. 307-310
-
-
Bos, C.J.1
Debets, A.J.M.2
Kobus, G.3
Slakhorst, S.M.4
Swart, K.5
-
10
-
-
51349090907
-
Strain-specific retrotransposon-mediated recombination in commercially used Aspergillus niger strain
-
Braumann I, van den Berg M, Kempken F. 2008. Strain-specific retrotransposon-mediated recombination in commercially used Aspergillus niger strain. Mol Genet Genomics 280: 319-325.
-
(2008)
Mol Genet Genomics
, vol.280
, pp. 319-325
-
-
Braumann, I.1
Van Den Berg, M.2
Kempken, F.3
-
11
-
-
0015237209
-
Structure and synthesis of kotanin and desmethylkotanin, metabolites of Aspergillus glaucus
-
Büchi G, Klaubert D, Shank R, Weinreb S, Wogan GN. 1971. Structure and synthesis of kotanin and desmethylkotanin, metabolites of Aspergillus glaucus. J Org Chem 36: 1143-1147.
-
(1971)
J Org Chem
, vol.36
, pp. 1143-1147
-
-
Büchi, G.1
Klaubert, D.2
Shank, R.3
Weinreb, S.4
Wogan, G.N.5
-
12
-
-
0016630435
-
Protein content and amino acid composition of certain fungi evaluated for microbial protein production
-
Christias C, Couvaraki C, Georgopoulos SG, Vomvoyanni V. 1975. Protein content and amino acid composition of certain fungi evaluated for microbial protein production. Appl Microbiol 29: 250-254.
-
(1975)
Appl Microbiol
, vol.29
, pp. 250-254
-
-
Christias, C.1
Couvaraki, C.2
Georgopoulos, S.G.3
Vomvoyanni, V.4
-
13
-
-
33846883009
-
The genome of an industrial workhorse
-
DOI 10.1038/nbt0207-189, PII NBT0207189
-
Cullen D. 2007. The genome of an industrial workhorse. Nat Biotechnol 25: 189-190. (Pubitemid 46227115)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.2
, pp. 189-190
-
-
Cullen, D.1
-
14
-
-
34548669353
-
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization
-
Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, et al. 2007. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 317: 1400-1402.
-
(2007)
Science
, vol.317
, pp. 1400-1402
-
-
Cuomo, C.A.1
Güldener, U.2
Xu, J.R.3
Trail, F.4
Turgeon, B.G.5
Di Pietro, A.6
Walton, J.D.7
Ma, L.J.8
Baker, S.E.9
Rep, M.10
-
15
-
-
0018473253
-
Orlandin: A nontoxic fungal metabolite with plant growth inhibiting properties
-
Cutler HG, Crumley FG, Cox RH, Hernandez O, Cole RJ, Dorner JW. 1979. Orlandin: a nontoxic fungal metabolite with plant growth inhibiting properties. J Agric Food Chem 27: 592-595.
-
(1979)
J Agric Food Chem
, vol.27
, pp. 592-595
-
-
Cutler, H.G.1
Crumley, F.G.2
Cox, R.H.3
Hernandez, O.4
Cole, R.J.5
Dorner, J.W.6
-
16
-
-
0024789126
-
Mitotic mapping in linkage group V of Aspergillus niger based on selection of auxotrophic recombinants by Novozym enrichment
-
Debets A, Swart K, Bos C. 1989. Mitotic mapping in linkage group V of Aspergillus niger based on selection of auxotrophic recombinants by Novozym enrichment. Can J Microbiol 35: 982-988. (Pubitemid 20035425)
-
(1989)
Canadian Journal of Microbiology
, vol.35
, Issue.11
, pp. 982-988
-
-
Debets, A.J.M.1
Swart, K.2
Bos, C.J.3
-
17
-
-
0025609256
-
An electrophoretic karyotype of Aspergillus niger
-
Debets A, Holub E, Swart K, van den Broek H, Bos C. 1990a. An electrophoretic karyotype of Aspergillus niger. Mol Gen Genet 224: 264-268.
-
(1990)
Mol Gen Genet
, vol.224
, pp. 264-268
-
-
Debets, A.1
Holub, E.2
Swart, K.3
Van Den Broek, H.4
Bos, C.5
-
18
-
-
0025327958
-
Genetic analysis of Aspergillus niger: Isolation of chlorate resistance mutants, their use in mitotic mapping and evidence for an eighth linkage group
-
Debets A, Swart K, Bos C. 1990b. Genetic analysis of Aspergillus niger: Isolation of chlorate resistance mutants, their use in mitotic mapping and evidence for an eighth linkage group. Mol Gen Genet 221: 453-458. (Pubitemid 20195865)
-
(1990)
Molecular and General Genetics
, vol.221
, Issue.3
, pp. 453-458
-
-
Debets, A.J.M.1
Swart, K.2
Bos, C.J.3
-
19
-
-
43249118838
-
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
-
doi: 10.1371/journal.pgen.1000046
-
Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, et al. 2008. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. PLoS Genet 4: e1000046. doi: 10.1371/journal.pgen.1000046.
-
(2008)
PLoS Genet
, vol.4
-
-
Fedorova, N.D.1
Khaldi, N.2
Joardar, V.S.3
Maiti, R.4
Amedeo, P.5
Anderson, M.J.6
Crabtree, J.7
Silva, J.C.8
Badger, J.H.9
Albarraq, A.10
-
20
-
-
6444236152
-
Polyphasic taxonomy of Penicillium subgenus Penicillium. A guide to identification of the food and air-borne terverticillate Penicillia and their mycotoxins
-
Frisvad JC, Samson R. 2004. Polyphasic taxonomy of Penicillium subgenus Penicillium. A guide to identification of the food and air-borne terverticillate Penicillia and their mycotoxins. Stud Mycol 49: 1-52.
-
(2004)
Stud Mycol
, vol.49
, pp. 1-52
-
-
Frisvad, J.C.1
Samson, R.2
-
21
-
-
0023196165
-
Standardized high-performance liquid chromatography of 182 mycotoxins and other fungal metabolites based on alkylphenone retention indices and UV-VIS spectra (diode array detection)
-
Frisvad JC, Thrane U. 1987. Standardized high performance liquid chromatography of 182 mycotoxins and other fungal metabolites based on alkylphenone indices and UV VIS spectra (diode array detection). J Chromatogr 404: 195-214. (Pubitemid 17128328)
-
(1987)
Journal of Chromatography
, vol.404
, Issue.1
, pp. 195-214
-
-
Frisvad, J.C.1
Thrane, U.2
-
22
-
-
38549106625
-
Secondary metabolite profiling, growth profiles and other tools for species recognition and important Aspergillus mycotoxins
-
DOI 10.3114/sim.2007.59.04
-
Frisvad JC, Larsen TO, de Vries R, Meijer M, Houbraken J, Cabañes FJ, Ehrlich K, Samson RA. 2007a. Secondary metabolite profiling, growth profiles and other tools for species recognition and important Aspergillus mycotoxins. Stud Mycol 59: 31-37. (Pubitemid 351155584)
-
(2007)
Studies in Mycology
, vol.59
, pp. 31-37
-
-
Frisvad, J.C.1
Larsen, T.O.2
De Vries, R.3
Meijer, M.4
Houbraken, J.5
Cabanes, F.J.6
Ehrlich, K.7
Samson, R.A.8
-
23
-
-
36749060149
-
Fumonisin B2 production by Aspergillus niger
-
Frisvad JC, Smedsgaard J, Samson R, Larsen T, Thrane U. 2007b. Fumonisin B2 production by Aspergillus niger. J Agric Food Chem 55: 9727-9732.
-
(2007)
J Agric Food Chem
, vol.55
, pp. 9727-9732
-
-
Frisvad, J.C.1
Smedsgaard, J.2
Samson, R.3
Larsen, T.4
Thrane, U.5
-
24
-
-
33749467999
-
Tensidols, new potentiators of antifungal miconazole activity, produced by Aspergillus niger FKI-2342
-
Fukuda T, Hasegawa Y, Hagimori K, Yamaguchi Y, Masuma R, Tomoda H, Omura S. 2006. Tensidols, new potentiators of antifungal miconazole activity, produced by Aspergillus niger FKI-2342. J Antibiot (Tokyo) 59: 480-485. (Pubitemid 44520166)
-
(2006)
Journal of Antibiotics
, vol.59
, Issue.8
, pp. 480-485
-
-
Fukuda, T.1
Hasegawa, Y.2
Hagimori, K.3
Yamaguchi, Y.4
Masuma, R.5
Tomoda, H.6
Omura, S.7
-
25
-
-
28844461287
-
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
-
DOI 10.1038/nature04341
-
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, et al. 2005. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature 438: 1105-1115. (Pubitemid 41831674)
-
(2005)
Nature
, vol.438
, Issue.7071
, pp. 1105-1115
-
-
Galagan, J.E.1
Calvo, S.E.2
Cuomo, C.3
Ma, L.-J.4
Wortman, J.R.5
Batzoglou, S.6
Lee, S.-I.7
Basturkmen, M.8
Spevak, C.C.9
Clutterbuck, J.10
Kapitonov, V.11
Jurka, J.12
Scazzocchio, C.13
Farman, M.14
Butler, J.15
Purcell, S.16
Harris, S.17
Braus, G.H.18
Draht, O.19
Busch, S.20
D'Enfert, C.21
Bouchier, C.22
Goldman, G.H.23
Bell-Pedersen, D.24
Griffiths-Jones, S.25
Doonan, J.H.26
Yu, J.27
Vienken, K.28
Pain, A.29
Freitag, M.30
Selker, E.U.31
Archer, D.B.32
Penalva, M.A.33
Oakley, B.R.34
Momany, M.35
Tanaka, T.36
Kumagai, T.37
Asai, K.38
Machida, M.39
Nierman, W.C.40
Denning, D.W.41
Caddick, M.42
Hynes, M.43
Paoletti, M.44
Fischer, R.45
Miller, B.46
Dyer, P.47
Sachs, M.S.48
Osmani, S.A.49
Birren, B.W.50
more..
-
26
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
doi: 10.1186/gb-2004-5-10-r80
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, et al. 2004. Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol 5: R80. doi: 10.1186/gb-2004-5-10-r80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
-
27
-
-
0028969372
-
Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes
-
Glass NL, Donaldson GC. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Appl Environ Microbiol 61: 1323-1330.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 1323-1330
-
-
Glass, N.L.1
Donaldson, G.C.2
-
28
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon D, Abajian C, Green P. 1998. Consed: A graphical tool for sequence finishing. Genome Res 8: 195-202. (Pubitemid 28177231)
-
(1998)
Genome Research
, vol.8
, Issue.3
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
29
-
-
0025201982
-
Position effect at S. cerevisiae telomeres: Reversible repression of Pol II transcription
-
Gottschling D, Aparicio O, Billington B, Zakian V. 1990. Position effect at S. cerevisiae telomeres: Reversible repression of Pol II transcription. Cell 63: 751-762.
-
(1990)
Cell
, vol.63
, pp. 751-762
-
-
Gottschling, D.1
Aparicio, O.2
Billington, B.3
Zakian, V.4
-
30
-
-
0346801873
-
The Gene Oncology (GO) database and informatics resource
-
Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, et al. 2004. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 1: D258-D261. (Pubitemid 38081651)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashburner, M.5
Foulger, R.6
Eilbeck, K.7
Lewis, S.8
Marshall, B.9
Mungall, C.10
Richter, J.11
Rubin, G.M.12
Blake, J.A.13
Bult, C.14
Dolan, M.15
Drabkin, H.16
Eppig, J.T.17
Hill, D.P.18
Ni, L.19
Ringwald, M.20
Balakrishnan, R.21
Cherry, J.M.22
Christie, K.R.23
Costanzo, M.C.24
Dwight, S.S.25
Engel, S.26
Fisk, D.G.27
Hirschman, J.E.28
Hong, E.L.29
Nash, R.S.30
Sethuraman, A.31
Theesfeld, C.L.32
Botstein, D.33
Dolinski, K.34
Feierbach, B.35
Berardini, T.36
Mundodi, S.37
Rhee, S.Y.38
Apweiler, R.39
Barrell, D.40
Camon, E.41
Dimmer, E.42
Lee, V.43
Chisholm, R.44
Gaudet, P.45
Kibbe, W.46
Kishore, R.47
Schwarz, E.M.48
Sternberg, P.49
Gwinn, M.50
Hannick, L.51
Wortman, J.52
Berriman, M.53
Wood, V.54
De La, C.N.55
Tonellato, P.56
Jaiswal, P.57
Seigfried, T.58
White, R.59
more..
-
31
-
-
4644243337
-
New natural products from the sponge-derived fungus Aspergillus niger
-
DOI 10.1021/np030551d
-
Hiort J, Maksimenka K, Reichert M, Perović-Ottstadt S, Lin WH, Wray V, Steube K, Schaumann K, Weber H, Proksch P, et al 2004. New natural products from the sponge-derived fungus Aspergillus niger. J Nat Prod 67: 1532-1543. (Pubitemid 39298623)
-
(2004)
Journal of Natural Products
, vol.67
, Issue.9
, pp. 1532-1543
-
-
Hiort, J.1
Maksimenka, K.2
Reichert, M.3
Perovic-Ottstadt, S.4
Lin, W.H.5
Wray, V.6
Steube, K.7
Schaumann, K.8
Weber, H.9
Proksch, P.10
Ebel, R.11
Muller, W.E.G.12
Bringmann, G.13
-
32
-
-
0033401142
-
Funalenone, a novel collagenase inhibitor produced by Aspergillus niger
-
Inokoshi J, Shiomi K, Masuma R, Tanaka H, Yamada H, Omura S. 1999. Funalenone, a novel collagenase inhibitor produced by Aspergillus niger. J Antibiot (Tokyo) 52: 1095-1100. (Pubitemid 30072581)
-
(1999)
Journal of Antibiotics
, vol.52
, Issue.12
, pp. 1095-1100
-
-
Inokoshi, J.1
Shiomi, K.2
Masuma, R.3
Tanaka, H.4
Yamada, H.5
Omura, S.6
-
33
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. 2003. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
34
-
-
0016660655
-
Isolation and identification of nigragillin as an insecticidal metabolite produced by Aspergillus niger
-
Isogai A, Horii T, Suzuki A, Murakoshi S, Ikeda K, Sato S, Tamura S. 1975. Isolation and identification of nigragillin as an insecticidal metabolite produced by Aspergillus niger. Agric Biol Chem 39: 739-740.
-
(1975)
Agric Biol Chem
, vol.39
, pp. 739-740
-
-
Isogai, A.1
Horii, T.2
Suzuki, A.3
Murakoshi, S.4
Ikeda, K.5
Sato, S.6
Tamura, S.7
-
36
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M. 2004. The KEGG resource for deciphering the genome. Nucleic Acids Res 32: D277-D280. (Pubitemid 38081656)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
37
-
-
0038364357
-
Aspergillus niger citric acid accumulation: Do we understand this well working black box?
-
Karaffa L, Kubicek CP. 2003. Aspergillus niger citric acid accumulation: do we understand this well working black box? Appl Microbiol Biotechnol 61: 189-196.
-
(2003)
Appl Microbiol Biotechnol
, vol.61
, pp. 189-196
-
-
Karaffa, L.1
Kubicek, C.P.2
-
38
-
-
47649104484
-
Horizontal gene transfer in eukaryotic evolution
-
Keeling PJ, Palmer JD. 2008. Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet 9: 605-617.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 605-617
-
-
Keeling, P.J.1
Palmer, J.D.2
-
39
-
-
52449116204
-
Elusive origins of the extra genes in Aspergillus oryzae
-
doi: 10.1371/journal.pone.0003036
-
Khaldi N, Wolfe KH. 2008. Elusive origins of the extra genes in Aspergillus oryzae. PLoS ONE 3: e3036. doi: 10.1371/journal.pone.0003036.
-
(2008)
PLoS ONE
, vol.3
-
-
Khaldi, N.1
Wolfe, K.H.2
-
40
-
-
44649170477
-
Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi
-
doi: 10.1186/gb-2008-9-1-r18
-
Khaldi N, Collemare J, Lebrun MH, Wolfe KH. 2008. Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi. Genome Biol 9: R18. doi: 10.1186/gb-2008-9-1-r18.
-
(2008)
Genome Biol
, vol.9
-
-
Khaldi, N.1
Collemare, J.2
Lebrun, M.H.3
Wolfe, K.H.4
-
41
-
-
16444381885
-
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
-
doi: 10.1186/gb-2004-5-2-r7
-
Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, et al. 2004. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes. Genome Biol 5: R7. doi: 10.1186/gb-2004-5-2-r7.
-
(2004)
Genome Biol
, vol.5
-
-
Koonin, E.V.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Krylov, D.M.5
Makarova, K.S.6
Mazumder, R.7
Mekhedov, S.L.8
Nikolskaya, A.N.9
Rao, B.S.10
-
42
-
-
0025220681
-
Cloning, characterization, and expression of two alpha-amylase genes from Aspergillus niger var. awamori
-
Korman DR, Bayliss FT, Barnett CC, Carmona CL, Kodama KH, Royer TJ, Thompson SA, Ward M, Wilson LJ, Berka RM. 1990. Cloning, characterization, and expression of two alpha-amylase genes from Aspergillus niger var. awamori. Curr Genet 17: 203-212. (Pubitemid 20107665)
-
(1990)
Current Genetics
, vol.17
, Issue.3
, pp. 203-212
-
-
Korman, D.R.1
Bayliss, F.T.2
Barnett, C.C.3
Carmona, C.L.4
Kodama, K.H.5
Royer, T.J.6
Thompson, S.A.7
Ward, M.8
Wilson, L.J.9
Berka, R.M.10
-
43
-
-
0001626003
-
Proposals for nomina specifica conservanda and rijicienda in Aspergillus and Penicillium (Fungi)
-
Kozakiewicz Z, Frisvad JC, Hawksworth DL, Pitt JI, Samson RA, Stolk AC. 1992. Proposals for nomina specifica conservanda and rijicienda in Aspergillus and Penicillium (Fungi). Taxon 41: 109-113.
-
(1992)
Taxon
, vol.41
, pp. 109-113
-
-
Kozakiewicz, Z.1
Frisvad, J.C.2
Hawksworth, D.L.3
Pitt, J.I.4
Samson, R.A.5
Stolk, A.C.6
-
44
-
-
57249097123
-
Developing Aspergillus as a host for heterologous expression
-
Lubertozzi D, Keasling JD. 2008. Developing Aspergillus as a host for heterologous expression. Biotechnol Adv 27: 53-75.
-
(2008)
Biotechnol Adv
, vol.27
, pp. 53-75
-
-
Lubertozzi, D.1
Keasling, J.D.2
-
45
-
-
55149112803
-
An evolutionary conserved Dgalacturonic acid metabolic pathway operates across filamentous fungi capable of pectin degradation
-
Martens-Uzunova ES, Schaap PJ. 2008. An evolutionary conserved Dgalacturonic acid metabolic pathway operates across filamentous fungi capable of pectin degradation. Fungal Genet Biol 45: 1449-1457.
-
(2008)
Fungal Genet Biol
, vol.45
, pp. 1449-1457
-
-
Martens-Uzunova, E.S.1
Schaap, P.J.2
-
46
-
-
51649150555
-
Measurement of amyloglucosidase using p-nitrophenyl b-maltoside as substrate
-
McCleary BV, Bouhet F, Driguez H. 1991. Measurement of amyloglucosidase using p-nitrophenyl b-maltoside as substrate. Biotechnol Tech 5: 255-258.
-
(1991)
Biotechnol Tech
, vol.5
, pp. 255-258
-
-
McCleary, B.V.1
Bouhet, F.2
Driguez, H.3
-
47
-
-
3242876311
-
BLAST: At the core of a powerful and diverse set of sequence analysis tools
-
DOI 10.1093/nar/gkh435
-
McGinnis S, Madden T. 2004. BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res 32: W20-W25. (Pubitemid 38997292)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.WEB SERVER ISS.
-
-
McGinnis, S.1
Madden, T.L.2
-
48
-
-
0038796974
-
Fungal metabolite screening: Database of 474 mycotoxins and fungal metabolites for dereplication by standardised liquid chromatography-UV-mass spectrometry methodology
-
DOI 10.1016/S0021-9673(03)00490-4
-
Nielsen KF, Smedsgaard J. 2003. Fungal metabolite screening: database of 474 mycotoxins and fungal metabolites for dereplication by standardized liquid chromatography-UV-mass spectrometry methodology. J Chromatogr A 1002: 111-136. (Pubitemid 36700450)
-
(2003)
Journal of Chromatography A
, vol.1002
, Issue.1-2
, pp. 111-136
-
-
Nielsen, K.F.1
Smedsgaard, J.2
-
50
-
-
33846861493
-
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
-
Pel HJ, deWinde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, et al. 2007. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol 25: 221-231.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 221-231
-
-
Pel, H.J.1
DeWinde, J.H.2
Archer, D.B.3
Dyer, P.S.4
Hofmann, G.5
Schaap, P.J.6
Turner, G.7
De Vries, R.P.8
Albang, R.9
Albermann, K.10
-
51
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
(ed. S Krawetz, S Misener), Humana, Totowa, NJ
-
Rozen S, Skaletsky H. 2000. Primer3 on the WWW for general users and for biologist programmers. In Bioinformatics methods and protocols: Methods in molecular biology (ed. S Krawetz, S Misener), pp. 365-386. Humana, Totowa, NJ.
-
(2000)
Bioinformatics Methods and Protocols: Methods in Molecular Biology
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
52
-
-
0034065724
-
Ab initio gene finding in Drosophila genomic DNA
-
DOI 10.1101/gr.10.4.516
-
Salamov AA, Solovyev VV. 2000. Ab initio gene finding in Drosophila genomic DNA. Genome Res 10: 516-522. (Pubitemid 30259081)
-
(2000)
Genome Research
, vol.10
, Issue.4
, pp. 516-522
-
-
Salamov, A.A.1
Solovyev, V.V.2
-
53
-
-
0036039911
-
On the safety of Aspergillus niger - A review
-
DOI 10.1007/s00253-002-1032-6
-
Schuster E, Dunn-Coleman N, Frisvad JC, van Dijck PWM. 2002. On the safety of Aspergillus niger - a review. Appl Microbiol Biotechnol 59: 426-435. (Pubitemid 35002176)
-
(2002)
Applied Microbiology and Biotechnology
, vol.59
, Issue.4-5
, pp. 426-435
-
-
Schuster, E.1
Dunn-Coleman, N.2
Frisvad, J.3
Van Dijck, P.4
-
54
-
-
0026813059
-
Cloning the alpha-amylase cDNA of Aspergillus shirousamii and its expression in Saccharomyces cerevisiae
-
Shibuya I, Tamura G, Ishikawa T, Hara S. 1992. Cloning the alpha-amylase cDNA of Aspergillus shirousamii and its expression in Saccharomyces cerevisiae. Biosci Biotechnol Biochem 56: 174-179.
-
(1992)
Biosci Biotechnol Biochem
, vol.56
, pp. 174-179
-
-
Shibuya, I.1
Tamura, G.2
Ishikawa, T.3
Hara, S.4
-
55
-
-
0031592466
-
Micro-scale extraction procedure for standardization screening of fungal metabolite production in cultures
-
DOI 10.1016/S0021-9673(96)00803-5, PII S0021967396008035
-
Smedsgaard J. 1997. Micro-scale extraction procedure for standardised screening of fungal metabolite production in cultures. J Chromatogr A 760: 264-270. (Pubitemid 27085582)
-
(1997)
Journal of Chromatography A
, vol.760
, Issue.2
, pp. 264-270
-
-
Smedsgaard, J.1
-
56
-
-
0022432236
-
Copia is transcriptionally responsive to environmental stress
-
Strand DJ, McDonald JF. 1985. Copia is transcriptionally responsive to environmental stress. Nucleic Acids Res 13: 4401-4410.
-
(1985)
Nucleic Acids Res
, vol.13
, pp. 4401-4410
-
-
Strand, D.J.1
McDonald, J.F.2
-
57
-
-
41149112019
-
Metabolic peculiarities of Aspergillus niger disclosed by comparativemetabolic genomics
-
doi: 10.1186/gb-2007-8-9-r182
-
Sun J, Lu X, Rinas U, Zeng A. 2007. Metabolic peculiarities of Aspergillus niger disclosed by comparativemetabolic genomics. Genome Biol 8: R182. doi: 10.1186/gb-2007-8-9-r182.
-
(2007)
Genome Biol
, vol.8
-
-
Sun, J.1
Lu, X.2
Rinas, U.3
Zeng, A.4
-
59
-
-
0012875345
-
Yellow pigments of Aspergillus niger and Asp. awamori. Part. I. Isolation of aurasperone A and related pigments
-
Tanaka H, Wang PL, Yamada O, Tamura L. 1966. Yellow pigments of Aspergillus niger and Asp. awamori. Part. I. Isolation of aurasperone A and related pigments. Agric Biol Chem 30: 107-113.
-
(1966)
Agric Biol Chem
, vol.30
, pp. 107-113
-
-
Tanaka, H.1
Wang, P.L.2
Yamada, O.3
Tamura, L.4
-
60
-
-
0028509254
-
TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
-
van de Peer Y, de Wachter R. 1994. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10: 569-570.
-
(1994)
Comput Appl Biosci
, vol.10
, pp. 569-570
-
-
Van De Peer, Y.1
De Wachter, R.2
-
61
-
-
79957952950
-
The importance of Aspergilli and regulatory aspects of Aspergillus nomenclature
-
(ed. J Varga, RA Samso), Wageningen Academic, Wageningen, The Netherlands
-
van Dijck PWM. 2008. The importance of Aspergilli and regulatory aspects of Aspergillus nomenclature. In Aspergillus in the genomic era (ed. J Varga, RA Samso), pp. 249-257. Wageningen Academic, Wageningen, The Netherlands.
-
(2008)
Aspergillus in the Genomic Era
, pp. 249-257
-
-
Van Dijck, P.W.M.1
-
62
-
-
0038159924
-
On the safety of a new generation of DSM Aspergillus niger enzyme production strains
-
DOI 10.1016/S0273-2300(03)00049-7
-
van Dijck PWM, Selten GCM, Hempenius RA. 2003. On the safety of a new generation of DSM Aspergillus niger production strains. Regul Toxicol Pharmacol 38: 27-35. (Pubitemid 36870867)
-
(2003)
Regulatory Toxicology and Pharmacology
, vol.38
, Issue.1
, pp. 27-35
-
-
Van Dijck, P.W.M.1
Selten, G.C.M.2
Hempenius, R.A.3
-
63
-
-
79957962451
-
Process of producing glucamylase and an alcohol product
-
US patent 3,418,211. Hiram Walker & Sons, Inc., Peoria, IL
-
van Lanen JM, Smith MB. 1968. Process of producing glucamylase and an alcohol product. US patent 3,418,211. Hiram Walker & Sons, Inc., Peoria, IL.
-
(1968)
-
-
Van Lanen, J.M.1
Smith, M.B.2
-
64
-
-
0028341076
-
The complete karyotype of Aspergillus niger: The use of Introduced electrophoretic mobility variation of chromosomes for gene assignment studies
-
DOI 10.1007/BF00280189
-
Verdoes JC, Calil MR, Punt PJ, Debets F, Swart K, Stouthamer AH, van den Hondel CA. 1994. The complete karyotype of Aspergillus niger: The use of introduced electrophoretic mobility variation of chromosomes for gene assignment studies. Mol Gen Genet 244: 75-80. (Pubitemid 24216921)
-
(1994)
Molecular and General Genetics
, vol.244
, Issue.1
, pp. 75-80
-
-
Verdoes, J.C.1
Calil, M.R.2
Punt, P.J.3
Debets, F.4
Swart, K.5
Stouthamer, A.H.6
Van Den, H.C.A.M.J.J.7
-
65
-
-
36949008306
-
Identification of InuR, a new Zn(II)2Cys6 transcriptional activator involved in the regulation of inulinolytic genes in Aspergillus niger
-
DOI 10.1007/s00438-007-0290-5
-
Yuan X, Roubos J, van den Hondel C, Ram A. 2008a. Identification of InuR, a new Zn(II)2Cys6 transcriptional activator involved in the regulation of inulinolytic genes in Aspergillus niger. Mol Genet Genomics 279: 11-26. (Pubitemid 350243858)
-
(2008)
Molecular Genetics and Genomics
, vol.279
, Issue.1
, pp. 11-26
-
-
Yuan, X.-L.1
Roubos, J.A.2
Van Den, H.C.A.M.J.J.3
Ram, A.F.J.4
-
66
-
-
44149100746
-
Aspergillus niger genome-wide analysis reveals a large number of novel a-glucan acting enzymes with unexpected expression profiles
-
Yuan XL, van der Kaaij RM, van den Hondel CA, Punt PJ, van der Maarel MJ, Dijkhuizen L, Ram AF. 2008b. Aspergillus niger genome-wide analysis reveals a large number of novel a-glucan acting enzymes with unexpected expression profiles. Mol Genet Genomics 279: 545-561.
-
(2008)
Mol Genet Genomics
, vol.279
, pp. 545-561
-
-
Yuan, X.L.1
Van Der Kaaij, R.M.2
Van Den Hondel, C.A.3
Punt, P.J.4
Van Der Maarel, M.J.5
Dijkhuizen, L.6
Ram, A.F.7
-
67
-
-
0034800374
-
InterProScan - An integration platform for the signature-recognition methods in InterPro
-
Zdobnov EM, Apweiler R. 2001. InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847-848. (Pubitemid 32970486)
-
(2001)
Bioinformatics
, vol.17
, Issue.9
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
|