Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment

BMC Genomics

Volumn 15, Issue 1, 2014, Pages

  Worsley Hunt, Rebecca ^a,b   Mathelier, Anthony ^b   del Peso, Luis ^c   Wasserman, Wyeth W ^b,d  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^c UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

^d Centre for Molecular Medicine and Therapeutics   (Canada)

Author keywords

ChIP Seq; Chromatin immunoprecipitation; Motif prediction; Over representation analysis; Regulation; Sequence analysis; Transcription factor; Transcription factor binding site; Visualization

Indexed keywords

TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN; ZINC FINGER PROTEIN143;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; COMPUTER PROGRAM; CONTROLLED STUDY; DNA FLANKING REGION; GENE CONTROL; HIGH THROUGHPUT SEQUENCING; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PEPTIDE MAPPING; PREDICTION; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN LOCALIZATION; PROTEIN MOTIF; PROTEIN STRUCTURE; ANIMAL; BIOLOGY; DNA BASE COMPOSITION; GENOME; METABOLISM; NUCLEOTIDE MOTIF; PROCEDURES; REPRODUCIBILITY;

ALGORITHMS; ANIMALS; BASE COMPOSITION; BINDING SITES; CHROMATIN IMMUNOPRECIPITATION; COMPUTATIONAL BIOLOGY; GENOME; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; NUCLEOTIDE MOTIFS; REPRODUCIBILITY OF RESULTS; TRANSCRIPTION FACTORS;

EID: 84902057702     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-472     Document Type: Article

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