FindPeaks 3.1: A tool for identifying areas of enrichment from massively parallel short-read sequencing technology

Bioinformatics

Volumn 24, Issue 15, 2008, Pages 1729-1730

  Fejes, Anthony P ^a   Robertson, Gordon ^a   Bilenky, Mikhail ^a   Varhol, Richard ^a   Bainbridge, Matthew ^b   Jones, Steven J M ^a  

^a BRITISH COLUMBIA CANCER AGENCY   (Canada)

^b BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; TRANSCRIPTION FACTOR;

ARTICLE; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; DATA ANALYSIS SOFTWARE; DNA SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; SEQUENCE ANALYSIS;

EID: 48249140621     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn305     Document Type: Article

References (8)

1. Barski,A. et al. (2007) High-resolution profiling of histone methylations in the human genome. Cell, 129, 823-837.
2. Johnson,D.S. et al. (2007) Genome-wide mapping of in vivo protein-DNA interactions. Science, 316, 1497-1502.
3. Lander,E.S. and Waterman,M.S. (1988) Genomic mapping by fingerprinting random clones: A mathematical analysis. Genomics, 2, 231-239.
4. Morin,R.D. et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res., 18, 610-621.
5. Robertson,G. et al. (2007) Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat. Methods, 4, 651-671.
6. Schones,D.E. et al. (2008) Dynamic regulation of nucleosome positioning in the human genome. Cell, 132, 887-898.
7. Slater,G.S. and Birney,E. (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics, 6, 31.
8. Taylor,K.H. et al. (2007) Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. Cancer Res., 67, 8511-8518.