-
1
-
-
33750964714
-
Impacts of genetic bottlenecks on soybean genome diversity
-
10.1073/pnas.0604379103, 1624862, 17068128
-
Hyten DL, Song Q, Zhu Y, Choi IY, Nelson RL, Costa JM, Specht JE, Shoemaker RC, Cregan PB. Impacts of genetic bottlenecks on soybean genome diversity. Proceedings of the National Academy of Sciences of the United States of America 2006, 103(45):16666-16671. 10.1073/pnas.0604379103, 1624862, 17068128.
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.45
, pp. 16666-16671
-
-
Hyten, D.L.1
Song, Q.2
Zhu, Y.3
Choi, I.Y.4
Nelson, R.L.5
Costa, J.M.6
Specht, J.E.7
Shoemaker, R.C.8
Cregan, P.B.9
-
2
-
-
32344434582
-
Soybean Cultivars Resulted from More Recombination Events Than Unselected Lines in the Same Population
-
Stefaniak TR, Hyten DL, Pantalone VR, Klarer A, Pfeiffer TW. Soybean Cultivars Resulted from More Recombination Events Than Unselected Lines in the Same Population. Crop Science 2006, 46(1):43.
-
(2006)
Crop Science
, vol.46
, Issue.1
, pp. 43
-
-
Stefaniak, T.R.1
Hyten, D.L.2
Pantalone, V.R.3
Klarer, A.4
Pfeiffer, T.W.5
-
3
-
-
40849089396
-
Genetic design and statistical power of nested association mapping in maize
-
10.1534/genetics.107.074245, 2206100, 18202393
-
Yu J, Holland JB, McMullen MD, Buckler ES. Genetic design and statistical power of nested association mapping in maize. Genetics 2008, 178(1):539-551. 10.1534/genetics.107.074245, 2206100, 18202393.
-
(2008)
Genetics
, vol.178
, Issue.1
, pp. 539-551
-
-
Yu, J.1
Holland, J.B.2
McMullen, M.D.3
Buckler, E.S.4
-
4
-
-
68449094455
-
Genetic properties of the maize nested association mapping population
-
2009/08/08
-
McMullen MD, Kresovich S, Villeda HS, Bradbury P, Li H, Sun Q, Flint-Garcia S, Thornsberry J, Acharya C, Bottoms C, Brown P, Browne C, Eller M, Guill K, Harjes C, Kroon D, Lepak N, Mitchell SE, Peterson B, Pressoir G, Romero S, Oropeza Rosas M, Salvo S, Yates H, Hanson M, Jones E, Smith S, Glaubitz JC, Goodman M, Ware D, et al. Genetic properties of the maize nested association mapping population. Science, Volume 325 2009, 737-740. 2009/08/08.
-
(2009)
Science, Volume 325
, pp. 737-740
-
-
McMullen, M.D.1
Kresovich, S.2
Villeda, H.S.3
Bradbury, P.4
Li, H.5
Sun, Q.6
Flint-Garcia, S.7
Thornsberry, J.8
Acharya, C.9
Bottoms, C.10
Brown, P.11
Browne, C.12
Eller, M.13
Guill, K.14
Harjes, C.15
Kroon, D.16
Lepak, N.17
Mitchell, S.E.18
Peterson, B.19
Pressoir, G.20
Romero, S.21
Oropeza Rosas, M.22
Salvo, S.23
Yates, H.24
Hanson, M.25
Jones, E.26
Smith, S.27
Glaubitz, J.C.28
Goodman, M.29
Ware, D.30
more..
-
5
-
-
84863272847
-
Genome-wide haplotype changes produced by artificial selection during modern rice breeding in Japan
-
10.1371/journal.pone.0032982, 3302797, 22427922
-
Yonemaru J, Yamamoto T, Ebana K, Yamamoto E, Nagasaki H, Shibaya T, Yano M. Genome-wide haplotype changes produced by artificial selection during modern rice breeding in Japan. PloS one 2012, 7(3):e32982. 10.1371/journal.pone.0032982, 3302797, 22427922.
-
(2012)
PloS one
, vol.7
, Issue.3
-
-
Yonemaru, J.1
Yamamoto, T.2
Ebana, K.3
Yamamoto, E.4
Nagasaki, H.5
Shibaya, T.6
Yano, M.7
-
6
-
-
79551699087
-
The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82
-
10.1104/pp.110.166736, 3032456, 21115807
-
Haun WJ, Hyten DL, Xu WW, Gerhardt DJ, Albert TJ, Richmond T, Jeddeloh JA, Jia G, Springer NM, Vance CP, Stupar RM. The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82. Plant Physiol 2011, 155(2):645-655. 10.1104/pp.110.166736, 3032456, 21115807.
-
(2011)
Plant Physiol
, vol.155
, Issue.2
, pp. 645-655
-
-
Haun, W.J.1
Hyten, D.L.2
Xu, W.W.3
Gerhardt, D.J.4
Albert, T.J.5
Richmond, T.6
Jeddeloh, J.A.7
Jia, G.8
Springer, N.M.9
Vance, C.P.10
Stupar, R.M.11
-
7
-
-
0035837267
-
Linkage disequilibrium in the human genome
-
10.1038/35075590, 11346797
-
Reich DE, Cargill M, Bolk S, Ireland J, Sabeti PC, Richter DJ, Lavery T, Kouyoumjian R, Farhadian SF, Ward R, Lander ES. Linkage disequilibrium in the human genome. Nature 2001, 411(6834):199-204. 10.1038/35075590, 11346797.
-
(2001)
Nature
, vol.411
, Issue.6834
, pp. 199-204
-
-
Reich, D.E.1
Cargill, M.2
Bolk, S.3
Ireland, J.4
Sabeti, P.C.5
Richter, D.J.6
Lavery, T.7
Kouyoumjian, R.8
Farhadian, S.F.9
Ward, R.10
Lander, E.S.11
-
8
-
-
13444269543
-
Haploview: analysis and visualization of LD and haplotype maps
-
10.1093/bioinformatics/bth457, 15297300
-
Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 2005, 21(2):263-265. 10.1093/bioinformatics/bth457, 15297300.
-
(2005)
Bioinformatics
, vol.21
, Issue.2
, pp. 263-265
-
-
Barrett, J.C.1
Fry, B.2
Maller, J.3
Daly, M.J.4
-
9
-
-
0037452982
-
Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse
-
10.1073/pnas.0130101100, 152301, 12612341
-
Wiltshire T, Pletcher MT, Batalov S, Barnes SW, Tarantino LM, Cooke MP, Wu H, Smylie K, Santrosyan A, Copeland NG, Jenkins NA, Kalush F, Mural RJ, Glynne RJ, Kay SA, Adams MD, Fletcher CF. Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse. Proc Natl Acad Sci U S A 2003, 100(6):3380-3385. 10.1073/pnas.0130101100, 152301, 12612341.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, Issue.6
, pp. 3380-3385
-
-
Wiltshire, T.1
Pletcher, M.T.2
Batalov, S.3
Barnes, S.W.4
Tarantino, L.M.5
Cooke, M.P.6
Wu, H.7
Smylie, K.8
Santrosyan, A.9
Copeland, N.G.10
Jenkins, N.A.11
Kalush, F.12
Mural, R.J.13
Glynne, R.J.14
Kay, S.A.15
Adams, M.D.16
Fletcher, C.F.17
-
10
-
-
79959524146
-
A haplotype map of the human genome
-
10.1038/nature04226, 1880871, 16255080
-
Consortium TIH. A haplotype map of the human genome. Nature 2005, 437(7063):1299-1320. 10.1038/nature04226, 1880871, 16255080.
-
(2005)
Nature
, vol.437
, Issue.7063
, pp. 1299-1320
-
-
Consortium, T.I.H.1
-
11
-
-
42649140561
-
SNP and haplotype mapping for genetic analysis in the rat
-
10.1038/ng.124, 18443594
-
Saar K, Beck A, Bihoreau MT, Birney E, Brocklebank D, Chen Y, Cuppen E, Demonchy S, Dopazo J, Flicek P, Foglio M, Fujiyama A, Gut IG, Gauguier D, Guigo R, Guryev V, Heinig M, Hummel O, Jahn N, Klages S, Kren V, Kube M, Kuhl H, Kuramoto T, Kuroki Y, Lechner D, Lee YA, Lopez-Bigas N, Lathrop GM, Mashimo T. SNP and haplotype mapping for genetic analysis in the rat. Nat Genet 2008, 40(5):560-566. 10.1038/ng.124, 18443594.
-
(2008)
Nat Genet
, vol.40
, Issue.5
, pp. 560-566
-
-
Saar, K.1
Beck, A.2
Bihoreau, M.T.3
Birney, E.4
Brocklebank, D.5
Chen, Y.6
Cuppen, E.7
Demonchy, S.8
Dopazo, J.9
Flicek, P.10
Foglio, M.11
Fujiyama, A.12
Gut, I.G.13
Gauguier, D.14
Guigo, R.15
Guryev, V.16
Heinig, M.17
Hummel, O.18
Jahn, N.19
Klages, S.20
Kren, V.21
Kube, M.22
Kuhl, H.23
Kuramoto, T.24
Kuroki, Y.25
Lechner, D.26
Lee, Y.A.27
Lopez-Bigas, N.28
Lathrop, G.M.29
Mashimo, T.30
more..
-
12
-
-
34547118094
-
Evaluation of sample size effect on the identification of haplotype blocks
-
10.1186/1471-2105-8-200, 1913927, 17567919
-
Osabe D, Tanahashi T, Nomura K, Shinohara S, Nakamura N, Yoshikawa T, Shiota H, Keshavarz P, Yamaguchi Y, Kunika K, Moritani M, Inoue H, Itakura M. Evaluation of sample size effect on the identification of haplotype blocks. BMC Bioinformatics 2007, 8:200. 10.1186/1471-2105-8-200, 1913927, 17567919.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 200
-
-
Osabe, D.1
Tanahashi, T.2
Nomura, K.3
Shinohara, S.4
Nakamura, N.5
Yoshikawa, T.6
Shiota, H.7
Keshavarz, P.8
Yamaguchi, Y.9
Kunika, K.10
Moritani, M.11
Inoue, H.12
Itakura, M.13
-
13
-
-
34547108086
-
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
-
10.1126/science.1138632, 17641193
-
Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Scholkopf B, Nordborg M, Ratsch G, Ecker JR, Weigel D. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science 2007, 317(5836):338-342. 10.1126/science.1138632, 17641193.
-
(2007)
Science
, vol.317
, Issue.5836
, pp. 338-342
-
-
Clark, R.M.1
Schweikert, G.2
Toomajian, C.3
Ossowski, S.4
Zeller, G.5
Shinn, P.6
Warthmann, N.7
Hu, T.T.8
Fu, G.9
Hinds, D.A.10
Chen, H.11
Frazer, K.A.12
Huson, D.H.13
Scholkopf, B.14
Nordborg, M.15
Ratsch, G.16
Ecker, J.R.17
Weigel, D.18
-
14
-
-
70450204614
-
A first-generation haplotype map of maize
-
10.1126/science.1177837, 19965431
-
Gore MA, Chia JM, Elshire RJ, Sun Q, Ersoz ES, Hurwitz BL, Peiffer JA, McMullen MD, Grills GS, Ross-Ibarra J, Ware DH, Buckler ES. A first-generation haplotype map of maize. Science 2009, 326(5956):1115-1117. 10.1126/science.1177837, 19965431.
-
(2009)
Science
, vol.326
, Issue.5956
, pp. 1115-1117
-
-
Gore, M.A.1
Chia, J.M.2
Elshire, R.J.3
Sun, Q.4
Ersoz, E.S.5
Hurwitz, B.L.6
Peiffer, J.A.7
McMullen, M.D.8
Grills, G.S.9
Ross-Ibarra, J.10
Ware, D.H.11
Buckler, E.S.12
-
15
-
-
66449120272
-
High-throughput genotyping by whole-genome resequencing
-
10.1101/gr.089516.108, 2694477, 19420380
-
Huang X, Feng Q, Qian Q, Zhao Q, Wang L, Wang A, Guan J, Fan D, Weng Q, Huang T, Dong G, Sang T, Han B. High-throughput genotyping by whole-genome resequencing. Genome Res 2009, 19(6):1068-1076. 10.1101/gr.089516.108, 2694477, 19420380.
-
(2009)
Genome Res
, vol.19
, Issue.6
, pp. 1068-1076
-
-
Huang, X.1
Feng, Q.2
Qian, Q.3
Zhao, Q.4
Wang, L.5
Wang, A.6
Guan, J.7
Fan, D.8
Weng, Q.9
Huang, T.10
Dong, G.11
Sang, T.12
Han, B.13
-
16
-
-
77953796079
-
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
-
10.1073/pnas.1005931107, 2890813, 20498060
-
Xie W, Feng Q, Yu H, Huang X, Zhao Q, Xing Y, Yu S, Han B, Zhang Q. Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc Natl Acad Sci U S A 2010, 107(23):10578-10583. 10.1073/pnas.1005931107, 2890813, 20498060.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.23
, pp. 10578-10583
-
-
Xie, W.1
Feng, Q.2
Yu, H.3
Huang, X.4
Zhao, Q.5
Xing, Y.6
Yu, S.7
Han, B.8
Zhang, Q.9
-
17
-
-
78649479141
-
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
-
10.1038/ng.715, 21076406
-
Lam HM, Xu X, Liu X, Chen W, Yang G, Wong FL, Li MW, He W, Qin N, Wang B, Li J, Jian M, Wang J, Shao G, Sun SS, Zhang G. Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat Genet 2010, 42(12):1053-1059. 10.1038/ng.715, 21076406.
-
(2010)
Nat Genet
, vol.42
, Issue.12
, pp. 1053-1059
-
-
Lam, H.M.1
Xu, X.2
Liu, X.3
Chen, W.4
Yang, G.5
Wong, F.L.6
Li, M.W.7
He, W.8
Qin, N.9
Wang, B.10
Li, J.11
Jian, M.12
Wang, J.13
Shao, G.14
Sun, S.S.15
Zhang, G.16
-
18
-
-
84655176647
-
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm
-
Huang X, Zhao Y, Wei X, Li C, Wang A, Zhao Q, Li W, Guo Y, Deng L, Zhu C, Fan D, Lu Y, Weng Q, Liu K, Zhou T, Jing Y, Si L, Dong G, Huang T, Lu T, Feng Q, Qian Q, Li J, Han B. Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet 2012, 44(1):32-39.
-
(2012)
Nat Genet
, vol.44
, Issue.1
, pp. 32-39
-
-
Huang, X.1
Zhao, Y.2
Wei, X.3
Li, C.4
Wang, A.5
Zhao, Q.6
Li, W.7
Guo, Y.8
Deng, L.9
Zhu, C.10
Fan, D.11
Lu, Y.12
Weng, Q.13
Liu, K.14
Zhou, T.15
Jing, Y.16
Si, L.17
Dong, G.18
Huang, T.19
Lu, T.20
Feng, Q.21
Qian, Q.22
Li, J.23
Han, B.24
more..
-
19
-
-
84862936211
-
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
-
Xu X, Liu X, Ge S, Jensen JD, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li J, He W, Zhang G, Zheng X, Zhang F, Li Y, Yu C, Kristiansen K, Zhang X, Wang J, Wright M, McCouch S, Nielsen R, Wang W. Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat Biotechnol 2012, 30(1):105-111.
-
(2012)
Nat Biotechnol
, vol.30
, Issue.1
, pp. 105-111
-
-
Xu, X.1
Liu, X.2
Ge, S.3
Jensen, J.D.4
Hu, F.5
Li, X.6
Dong, Y.7
Gutenkunst, R.N.8
Fang, L.9
Huang, L.10
Li, J.11
He, W.12
Zhang, G.13
Zheng, X.14
Zhang, F.15
Li, Y.16
Yu, C.17
Kristiansen, K.18
Zhang, X.19
Wang, J.20
Wright, M.21
McCouch, S.22
Nielsen, R.23
Wang, W.24
more..
-
20
-
-
84875176954
-
Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
-
10.1038/nbt.2491, 23354103
-
Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla-Garcia N, Condie JA, Upadhyaya HD, Luo MC, et al. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat Biotechnol 2013, 31(3):240-246. 10.1038/nbt.2491, 23354103.
-
(2013)
Nat Biotechnol
, vol.31
, Issue.3
, pp. 240-246
-
-
Varshney, R.K.1
Song, C.2
Saxena, R.K.3
Azam, S.4
Yu, S.5
Sharpe, A.G.6
Cannon, S.7
Baek, J.8
Rosen, B.D.9
Tar'an, B.10
Millan, T.11
Zhang, X.12
Ramsay, L.D.13
Iwata, A.14
Wang, Y.15
Nelson, W.16
Farmer, A.D.17
Gaur, P.M.18
Soderlund, C.19
Penmetsa, R.V.20
Xu, C.21
Bharti, A.K.22
He, W.23
Winter, P.24
Zhao, S.25
Hane, J.K.26
Carrasquilla-Garcia, N.27
Condie, J.A.28
Upadhyaya, H.D.29
Luo, M.C.30
more..
-
21
-
-
0028814585
-
Soybean Pedigree Analysis Using Map-Based Molecular Markers: I Tracking RFLP Markers in Cultivars
-
Lorenzen LL, Boutin S, Young N, Specht JE, Shoemaker RC. Soybean Pedigree Analysis Using Map-Based Molecular Markers: I Tracking RFLP Markers in Cultivars. Crop Science 1995, 35(5):1326-1336.
-
(1995)
Crop Science
, vol.35
, Issue.5
, pp. 1326-1336
-
-
Lorenzen, L.L.1
Boutin, S.2
Young, N.3
Specht, J.E.4
Shoemaker, R.C.5
-
22
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
10.1038/nature08670, 20075913
-
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, et al. Genome sequence of the palaeopolyploid soybean. Nature 2010, 463(7278):178-183. 10.1038/nature08670, 20075913.
-
(2010)
Nature
, vol.463
, Issue.7278
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
Ma, J.4
Mitros, T.5
Nelson, W.6
Hyten, D.L.7
Song, Q.8
Thelen, J.J.9
Cheng, J.10
Xu, D.11
Hellsten, U.12
May, G.D.13
Yu, Y.14
Sakurai, T.15
Umezawa, T.16
Bhattacharyya, M.K.17
Sandhu, D.18
Valliyodan, B.19
Lindquist, E.20
Peto, M.21
Grant, D.22
Shu, S.23
Goodstein, D.24
Barry, K.25
Futrell-Griggs, M.26
Abernathy, B.27
Du, J.28
Tian, Z.29
Zhu, L.30
more..
-
23
-
-
78650668282
-
Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome
-
10.1073/pnas.1009526107, 3009785, 21131573
-
Kim MY, Lee S, Van K, Kim TH, Jeong SC, Choi IY, Kim DS, Lee YS, Park D, Ma J, Kim WY, Kim BC, Park S, Lee KA, Kim DH, Kim KH, Shin JH, Jang YE, Kim KD, Liu WX, Chaisan T, Kang YJ, Lee YH, Moon JK, Schmutz J, Jackson SA, Bhak J, Lee SH. Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Proc Natl Acad Sci U S A 2010, 107(51):22032-22037. 10.1073/pnas.1009526107, 3009785, 21131573.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.51
, pp. 22032-22037
-
-
Kim, M.Y.1
Lee, S.2
Van, K.3
Kim, T.H.4
Jeong, S.C.5
Choi, I.Y.6
Kim, D.S.7
Lee, Y.S.8
Park, D.9
Ma, J.10
Kim, W.Y.11
Kim, B.C.12
Park, S.13
Lee, K.A.14
Kim, D.H.15
Kim, K.H.16
Shin, J.H.17
Jang, Y.E.18
Kim, K.D.19
Liu, W.X.20
Chaisan, T.21
Kang, Y.J.22
Lee, Y.H.23
Moon, J.K.24
Schmutz, J.25
Jackson, S.A.26
Bhak, J.27
Lee, S.H.28
more..
-
24
-
-
0033601285
-
Genetic definition and sequence analysis of Arabidopsis centromeres
-
10.1126/science.286.5449.2468, 10617454
-
Copenhaver GP, Nickel K, Kuromori T, Benito MI, Kaul S, Lin X, Bevan M, Murphy G, Harris B, Parnell LD, McCombie WR, Martienssen RA, Marra M, Preuss D. Genetic definition and sequence analysis of Arabidopsis centromeres. Science 1999, 286(5449):2468-2474. 10.1126/science.286.5449.2468, 10617454.
-
(1999)
Science
, vol.286
, Issue.5449
, pp. 2468-2474
-
-
Copenhaver, G.P.1
Nickel, K.2
Kuromori, T.3
Benito, M.I.4
Kaul, S.5
Lin, X.6
Bevan, M.7
Murphy, G.8
Harris, B.9
Parnell, L.D.10
McCombie, W.R.11
Martienssen, R.A.12
Marra, M.13
Preuss, D.14
-
25
-
-
0038444113
-
The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms
-
10.1101/gr.808603, 430889, 12695326
-
Akhunov ED, Goodyear AW, Geng S, Qi LL, Echalier B, Gill BS, Miftahudin, Gustafson JP, Lazo G, Chao S, Anderson OD, Linkiewicz AM, Dubcovsky J, La Rota M, Sorrells ME, Zhang D, Nguyen HT, Kalavacharla V, Hossain K, Kianian SF, Peng J, Lapitan NL, Gonzalez-Hernandez JL, Anderson JA, Choi DW, Close TJ, Dilbirligi M, Gill KS, Walker-Simmons MK, Steber C, et al. The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms. Genome Res 2003, 13(5):753-763. 10.1101/gr.808603, 430889, 12695326.
-
(2003)
Genome Res
, vol.13
, Issue.5
, pp. 753-763
-
-
Akhunov, E.D.1
Goodyear, A.W.2
Geng, S.3
Qi, L.L.4
Echalier, B.5
Gill, B.S.6
Miftahudin7
Gustafson, J.P.8
Lazo, G.9
Chao, S.10
Anderson, O.D.11
Linkiewicz, A.M.12
Dubcovsky, J.13
La Rota, M.14
Sorrells, M.E.15
Zhang, D.16
Nguyen, H.T.17
Kalavacharla, V.18
Hossain, K.19
Kianian, S.F.20
Peng, J.21
Lapitan, N.L.22
Gonzalez-Hernandez, J.L.23
Anderson, J.A.24
Choi, D.W.25
Close, T.J.26
Dilbirligi, M.27
Gill, K.S.28
Walker-Simmons, M.K.29
Steber, C.30
more..
-
26
-
-
33645121316
-
Comprehensive molecular cytogenetic analysis of sorghum genome architecture: distribution of euchromatin, heterochromatin, genes and recombination in comparison to rice
-
10.1534/genetics.105.048215, 1456119, 16143604
-
Kim JS, Islam-Faridi MN, Klein PE, Stelly DM, Price HJ, Klein RR, Mullet JE. Comprehensive molecular cytogenetic analysis of sorghum genome architecture: distribution of euchromatin, heterochromatin, genes and recombination in comparison to rice. Genetics 2005, 171(4):1963-1976. 10.1534/genetics.105.048215, 1456119, 16143604.
-
(2005)
Genetics
, vol.171
, Issue.4
, pp. 1963-1976
-
-
Kim, J.S.1
Islam-Faridi, M.N.2
Klein, P.E.3
Stelly, D.M.4
Price, H.J.5
Klein, R.R.6
Mullet, J.E.7
-
27
-
-
33845768012
-
Recombination: an underappreciated factor in the evolution of plant genomes
-
10.1038/nrg1970, 17173059
-
Gaut BS, Wright SI, Rizzon C, Dvorak J, Anderson LK. Recombination: an underappreciated factor in the evolution of plant genomes. Nat Rev Genet 2007, 8(1):77-84. 10.1038/nrg1970, 17173059.
-
(2007)
Nat Rev Genet
, vol.8
, Issue.1
, pp. 77-84
-
-
Gaut, B.S.1
Wright, S.I.2
Rizzon, C.3
Dvorak, J.4
Anderson, L.K.5
-
28
-
-
33646170036
-
Euchromatin and pericentromeric heterochromatin: comparative composition in the tomato genome
-
1456407, 16489216
-
Wang Y, Tang X, Cheng Z, Mueller L, Giovannoni J, Tanksley SD. Euchromatin and pericentromeric heterochromatin: comparative composition in the tomato genome. Genetics 2006, 172(4):2529-2540. 1456407, 16489216.
-
(2006)
Genetics
, vol.172
, Issue.4
, pp. 2529-2540
-
-
Wang, Y.1
Tang, X.2
Cheng, Z.3
Mueller, L.4
Giovannoni, J.5
Tanksley, S.D.6
-
29
-
-
32544434915
-
Heterozygous insertions alter crossover distribution but allow crossover interference in Caenorhabditis elegans
-
10.1534/genetics.105.044834, 1456811, 16118192
-
Hammarlund M, Davis MW, Nguyen H, Dayton D, Jorgensen EM. Heterozygous insertions alter crossover distribution but allow crossover interference in Caenorhabditis elegans. Genetics 2005, 171(3):1047-1056. 10.1534/genetics.105.044834, 1456811, 16118192.
-
(2005)
Genetics
, vol.171
, Issue.3
, pp. 1047-1056
-
-
Hammarlund, M.1
Davis, M.W.2
Nguyen, H.3
Dayton, D.4
Jorgensen, E.M.5
-
30
-
-
0001638213
-
Duplications That Suppress and Deletions That Restore Expression from a Chalcone Synthase Multigene Family
-
10.1105/tpc.8.4.687, 161129, 12239396
-
Todd JJ, Vodkin LO. Duplications That Suppress and Deletions That Restore Expression from a Chalcone Synthase Multigene Family. Plant Cell 1996, 8(4):687-699. 10.1105/tpc.8.4.687, 161129, 12239396.
-
(1996)
Plant Cell
, vol.8
, Issue.4
, pp. 687-699
-
-
Todd, J.J.1
Vodkin, L.O.2
-
31
-
-
11144295642
-
Features of a 103-kb gene-rich region in soybean include an inverted perfect repeat cluster of CHS genes comprising the I locus
-
10.1139/g04-049, 15499396
-
Clough SJ, Tuteja JH, Li M, Marek LF, Shoemaker RC, Vodkin LO. Features of a 103-kb gene-rich region in soybean include an inverted perfect repeat cluster of CHS genes comprising the I locus. Genome 2004, 47(5):819-831. 10.1139/g04-049, 15499396.
-
(2004)
Genome
, vol.47
, Issue.5
, pp. 819-831
-
-
Clough, S.J.1
Tuteja, J.H.2
Li, M.3
Marek, L.F.4
Shoemaker, R.C.5
Vodkin, L.O.6
-
32
-
-
34249786267
-
Structural features of GmIRCHS, candidate of the I gene inhibiting seed coat pigmentation in soybean: implications for inducing endogenous RNA silencing of chalcone synthase genes
-
10.1007/s11103-007-9169-4, 17497082
-
Kasai A, Kasai K, Yumoto S, Senda M. Structural features of GmIRCHS, candidate of the I gene inhibiting seed coat pigmentation in soybean: implications for inducing endogenous RNA silencing of chalcone synthase genes. Plant Mol Biol 2007, 64(4):467-479. 10.1007/s11103-007-9169-4, 17497082.
-
(2007)
Plant Mol Biol
, vol.64
, Issue.4
, pp. 467-479
-
-
Kasai, A.1
Kasai, K.2
Yumoto, S.3
Senda, M.4
-
33
-
-
77958526918
-
Genetic analysis of genes controlling natural variation of seed coat and flower colors in soybean
-
10.1093/jhered/esq078, 20584753
-
Yang K, Jeong N, Moon JK, Lee YH, Lee SH, Kim HM, Hwang CH, Back K, Palmer RG, Jeong SC. Genetic analysis of genes controlling natural variation of seed coat and flower colors in soybean. J Hered 2010, 101(6):757-768. 10.1093/jhered/esq078, 20584753.
-
(2010)
J Hered
, vol.101
, Issue.6
, pp. 757-768
-
-
Yang, K.1
Jeong, N.2
Moon, J.K.3
Lee, Y.H.4
Lee, S.H.5
Kim, H.M.6
Hwang, C.H.7
Back, K.8
Palmer, R.G.9
Jeong, S.C.10
-
34
-
-
80655128685
-
Loss-of-function mutations affecting a specific Glycine max R2R3 MYB transcription factor result in brown hilum and brown seed coats
-
10.1186/1471-2229-11-155, 3229458, 22070454
-
Gillman JD, Tetlow A, Lee JD, Shannon JG, Bilyeu K. Loss-of-function mutations affecting a specific Glycine max R2R3 MYB transcription factor result in brown hilum and brown seed coats. BMC Plant Biol 2011, 11:155. 10.1186/1471-2229-11-155, 3229458, 22070454.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 155
-
-
Gillman, J.D.1
Tetlow, A.2
Lee, J.D.3
Shannon, J.G.4
Bilyeu, K.5
-
35
-
-
70350173304
-
Map-based cloning of the gene associated with the soybean maturity locus E3
-
10.1534/genetics.108.098772, 2728863, 19474204
-
Watanabe S, Hideshima R, Xia Z, Tsubokura Y, Sato S, Nakamoto Y, Yamanaka N, Takahashi R, Ishimoto M, Anai T, Tabata S, Harada K. Map-based cloning of the gene associated with the soybean maturity locus E3. Genetics 2009, 182(4):1251-1262. 10.1534/genetics.108.098772, 2728863, 19474204.
-
(2009)
Genetics
, vol.182
, Issue.4
, pp. 1251-1262
-
-
Watanabe, S.1
Hideshima, R.2
Xia, Z.3
Tsubokura, Y.4
Sato, S.5
Nakamoto, Y.6
Yamanaka, N.7
Takahashi, R.8
Ishimoto, M.9
Anai, T.10
Tabata, S.11
Harada, K.12
-
37
-
-
0037023349
-
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
-
10.1126/science.1068275, 11935018
-
Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, et al. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 2002, 296(5565):92-100. 10.1126/science.1068275, 11935018.
-
(2002)
Science
, vol.296
, Issue.5565
, pp. 92-100
-
-
Goff, S.A.1
Ricke, D.2
Lan, T.H.3
Presting, G.4
Wang, R.5
Dunn, M.6
Glazebrook, J.7
Sessions, A.8
Oeller, P.9
Varma, H.10
Hadley, D.11
Hutchison, D.12
Martin, C.13
Katagiri, F.14
Lange, B.M.15
Moughamer, T.16
Xia, Y.17
Budworth, P.18
Zhong, J.19
Miguel, T.20
Paszkowski, U.21
Zhang, S.22
Colbert, M.23
Sun, W.L.24
Chen, L.25
Cooper, B.26
Park, S.27
Wood, T.C.28
Mao, L.29
Quail, P.30
more..
-
38
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
10.1093/bioinformatics/btp324, 2705234, 19451168
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25(14):1754-1760. 10.1093/bioinformatics/btp324, 2705234, 19451168.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
39
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
10.1093/bioinformatics/btp352, 2723002, 19505943
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009, 25(16):2078-2079. 10.1093/bioinformatics/btp352, 2723002, 19505943.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
40
-
-
77956295988
-
The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
-
10.1101/gr.107524.110, 2928508, 20644199
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, De Pristo MA. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 2010, 20(9):1297-1303. 10.1101/gr.107524.110, 2928508, 20644199.
-
(2010)
Genome Res
, vol.20
, Issue.9
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
Garimella, K.7
Altshuler, D.8
Gabriel, S.9
Daly, M.10
De Pristo, M.A.11
-
41
-
-
0000732266
-
The estimation of map distance from recombination values
-
Kosambi DD. The estimation of map distance from recombination values. Ann Eugen 1943, 12:172-175.
-
(1943)
Ann Eugen
, vol.12
, pp. 172-175
-
-
Kosambi, D.D.1
|