-
1
-
-
13144306071
-
Genome-wide association studies for common diseases and complex traits
-
10.1038/nrg1521 15716906
-
Hirschhorn JN Daly MJ Genome-wide association studies for common diseases and complex traits Nat Rev Genet 2005 6 2 95-108 10.1038/ nrg1521 15716906
-
(2005)
Nat Rev Genet
, vol.6
, Issue.2
, pp. 95-108
-
-
Hirschhorn, J.N.1
Daly, M.J.2
-
2
-
-
0035941029
-
Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21
-
10.1126/science.1065573 11721056
-
Patil N Berno AJ Hinds DA Barrett WA Doshi JM Hacker CR Kautzer CR Lee DH Marjoribanks C McDonough DP Nguyen BT Norris MC Sheehan JB Shen N Stern D Stokowski RP Thomas DJ Trulson MO Vyas KR Frazer KA Fodor SP Cox DR Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21 Science 2001 294 5547 1719-23 10.1126/ science.1065573 11721056
-
(2001)
Science
, vol.294
, Issue.5547
, pp. 1719-1723
-
-
Patil, N.1
Berno, A.J.2
Hinds, D.A.3
Barrett, W.A.4
Doshi, J.M.5
Hacker, C.R.6
Kautzer, C.R.7
Lee, D.H.8
Marjoribanks, C.9
McDonough, D.P.10
Nguyen, B.T.11
Norris, M.C.12
Sheehan, J.B.13
Shen, N.14
Stern, D.15
Stokowski, R.P.16
Thomas, D.J.17
Trulson, M.O.18
Vyas, K.R.19
Frazer, K.A.20
Fodor, S.P.21
Cox, D.R.22
more..
-
3
-
-
0034791035
-
High-resolution haplotype structure in the human genome
-
10.1038/ng1001-229 11586305
-
Daly MJ Rioux JD Schaffner SF Hudson TJ Lander ES High-resolution haplotype structure in the human genome Nat Genet 2001 29 2 229-32 10.1038/ng1001-229 11586305
-
(2001)
Nat Genet
, vol.29
, Issue.2
, pp. 229-232
-
-
Daly, M.J.1
Rioux, J.D.2
Schaffner, S.F.3
Hudson, T.J.4
Lander, E.S.5
-
4
-
-
18444369013
-
The structure of haplotype blocks in the human genome
-
10.1126/science.1069424 12029063
-
Gabriel SB Schaffner SF Nguyen H Moore JM Roy J Blumenstiel B Higgins J DeFelice M Lochner A Faggart M Liu-Cordero SN Rotimi C Adeyemo A Cooper R Ward R Lander ES Daly MJ Altshuler D The structure of haplotype blocks in the human genome Science 2002 296 2225-29 10.1126/science.1069424 12029063
-
(2002)
Science
, vol.296
, pp. 2225-2229
-
-
Gabriel, S.B.1
Schaffner, S.F.2
Nguyen, H.3
Moore, J.M.4
Roy, J.5
Blumenstiel, B.6
Higgins, J.7
DeFelice, M.8
Lochner, A.9
Faggart, M.10
Liu-Cordero, S.N.11
Rotimi, C.12
Adeyemo, A.13
Cooper, R.14
Ward, R.15
Lander, E.S.16
Daly, M.J.17
Altshuler, D.18
-
5
-
-
28144457625
-
The effect of single-nucleotide polymorphism marker selection on patterns of haplotype blocks and haplotype frequency estimates
-
1285181 16380910 10.1086/498175
-
Nothnagel M Rohde K The effect of single-nucleotide polymorphism marker selection on patterns of haplotype blocks and haplotype frequency estimates Am J Hum Genet 2005 77 988-98 1285181 16380910 10.1086/498175
-
(2005)
Am J Hum Genet
, vol.77
, pp. 988-998
-
-
Nothnagel, M.1
Rohde, K.2
-
6
-
-
79959524146
-
A Haplotype map of the human genome
-
International HapMap Consortium A 10.1038/nature04226
-
International HapMap Consortium A Haplotype map of the human genome Nature 2005 27 1299-1320 10.1038/nature04226
-
(2005)
Nature
, vol.27
, pp. 1299-1320
-
-
-
7
-
-
0037370466
-
Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots
-
10.1038/ng1100 12590262
-
Phillips MS Lawrence R Sachidanandam R Morris AP Balding DJ Donaldson MA Studebaker JF Ankener WM Alfisi SV Kuo FS Camisa AL Pazorov V Scott KE Carey BJ Faith J Katari G Bhatti HA Cyr JM Derohannessian V Elosua C Forman AM Grecco NM Hock CR Kuebler JM Lathrop JA Mockler MA Nachtman EP Restine SL Varde SA Hozza MJ Gelfand CA Broxholme J Abecasis GR Boyce-Jacino MT Cardon LR Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots Nat Genet 2003 33 3 382-87 10.1038/ng1100 12590262
-
(2003)
Nat Genet
, vol.33
, Issue.3
, pp. 382-387
-
-
Phillips, M.S.1
Lawrence, R.2
Sachidanandam, R.3
Morris, A.P.4
Balding, D.J.5
Donaldson, M.A.6
Studebaker, J.F.7
Ankener, W.M.8
Alfisi, S.V.9
Kuo, F.S.10
Camisa, A.L.11
Pazorov, V.12
Scott, K.E.13
Carey, B.J.14
Faith, J.15
Katari, G.16
Bhatti, H.A.17
Cyr, J.M.18
Derohannessian, V.19
Elosua, C.20
Forman, A.M.21
Grecco, N.M.22
Hock, C.R.23
Kuebler, J.M.24
Lathrop, J.A.25
Mockler, M.A.26
Nachtman, E.P.27
Restine, S.L.28
Varde, S.A.29
Hozza, M.J.30
Gelfand, C.A.31
Broxholme, J.32
Abecasis, G.R.33
Boyce-Jacino, M.T.34
Cardon, L.R.35
more..
-
8
-
-
12144290432
-
The impact of SNP density on fine-scale patterns of linkage disequilibrium
-
10.1093/hmg/ddh060 14734624
-
Ke X Hunt S Tapper W Lawrence R Stavrides G Ghori J Whittaker P Collins A Morris AP Bentley D Cardon LR Deloukas P The impact of SNP density on fine-scale patterns of linkage disequilibrium Hum Mol Genet 2004 13 577-88 10.1093/hmg/ddh060 14734624
-
(2004)
Hum Mol Genet
, vol.13
, pp. 577-588
-
-
Ke, X.1
Hunt, S.2
Tapper, W.3
Lawrence, R.4
Stavrides, G.5
Ghori, J.6
Whittaker, P.7
Collins, A.8
Morris, A.P.9
Bentley, D.10
Cardon, L.R.11
Deloukas, P.12
-
9
-
-
0036844238
-
Distribution of recombination crossovers and the origin of haplotype blocks: The interplay of population history, recombination, and mutation
-
385104 12384857 10.1086/344398
-
Wang N Akey JM Zhang K Chakraborty R Jin L Distribution of recombination crossovers and the origin of haplotype blocks: The interplay of population history, recombination, and mutation Am J Hum Genet 2002 71 1227-34 385104 12384857 10.1086/344398
-
(2002)
Am J Hum Genet
, vol.71
, pp. 1227-1234
-
-
Wang, N.1
Akey, J.M.2
Zhang, K.3
Chakraborty, R.4
Jin, L.5
-
10
-
-
0033794938
-
Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data
-
1287896 10954684 10.1086/303069
-
Fallin D Schork NJ Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data Am J Hum Genet 2000 67 4 947-59 1287896 10954684 10.1086/303069
-
(2000)
Am J Hum Genet
, vol.67
, Issue.4
, pp. 947-959
-
-
Fallin, D.1
Schork, N.J.2
-
11
-
-
10044271302
-
The impact of sample size and marker selection on the study of haplotype structures
-
15588478
-
Sun X Stephens JC Zhao H The impact of sample size and marker selection on the study of haplotype structures Hum Genomics 2004 1 3 179-193 15588478
-
(2004)
Hum Genomics
, vol.1
, Issue.3
, pp. 179-193
-
-
Sun, X.1
Stephens, J.C.2
Zhao, H.3
-
12
-
-
0036563217
-
Sampling distribution of summary linkage disequilibrium measures
-
10.1046/j.1469-1809.2002.00108.x 12174213
-
Teare MD Dunning AM Durocher F Rennart G Easton DF Sampling distribution of summary linkage disequilibrium measures Ann Hum Genet 2002 66 Pt 3 223-33 10.1046/j.1469-1809.2002.00108.x 12174213
-
(2002)
Ann Hum Genet
, vol.66
, Issue.PART 3
, pp. 223-233
-
-
Teare, M.D.1
Dunning, A.M.2
Durocher, F.3
Rennart, G.4
Easton, D.F.5
-
13
-
-
29544446280
-
Analysis of concordance of different haplotype block partitioning algorithms
-
Dec 15 1343594 16356172 10.1186/1471-2105-6-303
-
Indap AR Marth GT Struble CA Tonellato P Olivier M Analysis of concordance of different haplotype block partitioning algorithms BMC Bioinformatics 6 303 2005, Dec 15 1343594 16356172 10.1186/ 1471-2105-6-303
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 303
-
-
Indap, A.R.1
Marth, G.T.2
Struble, C.A.3
Tonellato, P.4
Olivier, M.5
-
14
-
-
10344253282
-
The effect of haplotype-block definitions on inference of haplotype-block structure and htSNPs selection
-
10.1093/molbev/msh266 15371531
-
Ding K Zhou K Zhang J Knight J Zhang X Shen Y The effect of haplotype-block definitions on inference of haplotype-block structure and htSNPs selection Mol Biol Evol 2005 22 1 148-59 10.1093/molbev/ msh266 15371531
-
(2005)
Mol Biol Evol
, vol.22
, Issue.1
, pp. 148-159
-
-
Ding, K.1
Zhou, K.2
Zhang, J.3
Knight, J.4
Zhang, X.5
Shen, Y.6
-
15
-
-
33750553161
-
Association study on chromosome 20q11.21-13.13 locus and its contribution to type 2 diabetes susceptibility in Japanese
-
10.1007/s00439-006-0231-0 16955255
-
Tanahashi T Osabe D Nomura K Shinohara S Kato H Ichiishi E Nakamura N Yoshikawa T Takata Y Miyamoto T Shiota H Keshavarz P Yamaguchi Y Kunika K Moritani M Inoue H Itakura M Association study on chromosome 20q11.21-13.13 locus and its contribution to type 2 diabetes susceptibility in Japanese Hum Genet 2006 120 4 527-42 10.1007/ s00439-006-0231-0 16955255
-
(2006)
Hum Genet
, vol.120
, Issue.4
, pp. 527-542
-
-
Tanahashi, T.1
Osabe, D.2
Nomura, K.3
Shinohara, S.4
Kato, H.5
Ichiishi, E.6
Nakamura, N.7
Yoshikawa, T.8
Takata, Y.9
Miyamoto, T.10
Shiota, H.11
Keshavarz, P.12
Yamaguchi, Y.13
Kunika, K.14
Moritani, M.15
Inoue, H.16
Itakura, M.17
-
16
-
-
33645095759
-
Association of single-nucleotide polymorphisms in the suppressor of cytokine signaling 2 (SOCS2) gene with type 2 diabetes in the Japanese
-
10.1016/j.ygeno.2005.11.009 16406727
-
Kato H Nomura K Osabe D Shinohara S Mizumori O Katashima R Iwasaki S Nishimura K Yoshino M Kobori M Ichiishi E Nakamura N Yoshikawa T Tanahashi T Keshavarz P Kunika K Moritani M Kudo E Tsugawa K Takata Y Hamada D Yasui N Miyamoto T Shiota H Inoue H Itakura M Association of single-nucleotide polymorphisms in the suppressor of cytokine signaling 2 (SOCS2) gene with type 2 diabetes in the Japanese Genomics 2006 87 446-58 10.1016/j.ygeno.2005.11.009 16406727
-
(2006)
Genomics
, vol.87
, pp. 446-458
-
-
Kato, H.1
Nomura, K.2
Osabe, D.3
Shinohara, S.4
Mizumori, O.5
Katashima, R.6
Iwasaki, S.7
Nishimura, K.8
Yoshino, M.9
Kobori, M.10
Ichiishi, E.11
Nakamura, N.12
Yoshikawa, T.13
Tanahashi, T.14
Keshavarz, P.15
Kunika, K.16
Moritani, M.17
Kudo, E.18
Tsugawa, K.19
Takata, Y.20
Hamada, D.21
Yasui, N.22
Miyamoto, T.23
Shiota, H.24
Inoue, H.25
Itakura, M.26
more..
-
17
-
-
20844445968
-
Association between single-nucleotide polymorphisms in the SEC8L1 gene, which encodes a subunit of the exocyst complex, and rheumatoid arthritis in a Japanese population
-
10.1002/art.21013 15880602
-
Hamada D Takata Y Osabe D Nomura K Shinohara S Egawa H Nakano S Shinomiya F Scafe CR Reeve VM Miyamoto T Moritani M Kunika K Inoue H Yasui N Itakura M Association between single-nucleotide polymorphisms in the SEC8L1 gene, which encodes a subunit of the exocyst complex, and rheumatoid arthritis in a Japanese population Arthritis Rheum 2005 52 1371-80 10.1002/art.21013 15880602
-
(2005)
Arthritis Rheum
, vol.52
, pp. 1371-1380
-
-
Hamada, D.1
Takata, Y.2
Osabe, D.3
Nomura, K.4
Shinohara, S.5
Egawa, H.6
Nakano, S.7
Shinomiya, F.8
Scafe, C.R.9
Reeve, V.M.10
Miyamoto, T.11
Moritani, M.12
Kunika, K.13
Inoue, H.14
Yasui, N.15
Itakura, M.16
-
18
-
-
33646226097
-
Linkage disequilibrium in finite populations
-
10.1007/BF01245622
-
Hill WG Robertson A Linkage disequilibrium in finite populations Theor Appl Genet 1968 38 226-31 10.1007/BF01245622
-
(1968)
Theor Appl Genet
, vol.38
, pp. 226-231
-
-
Hill, W.G.1
Robertson, A.2
-
19
-
-
0002907949
-
The interaction of selection and linkage. I. General considerations: Heterotic models
-
1210557 17248194
-
Lewontin RC The interaction of selection and linkage. I. General considerations: Heterotic models Genetics 1964 49 49-67 1210557 17248194
-
(1964)
Genetics
, vol.49
, pp. 49-67
-
-
Lewontin, R.C.1
-
20
-
-
0031599142
-
Mersenne Twister: A 623-dimensionally equidistributed uniform pseudorandom number generator
-
10.1145/272991.272995
-
Matsumoto M Nishimura T Mersenne Twister: A 623-dimensionally equidistributed uniform pseudorandom number generator ACM Trans on Modeling and Computer Simulation 1998 8 3-30 10.1145/272991.272995
-
(1998)
ACM Trans on Modeling and Computer Simulation
, vol.8
, pp. 3-30
-
-
Matsumoto, M.1
Nishimura, T.2
-
21
-
-
0037227781
-
Robustness of inference of haplotype block structure
-
10.1089/106652703763255642 12676048
-
Schwartz R Halldorsson BV Bafna V Clark AG Istrail S Robustness of inference of haplotype block structure J Comput Biol 2003 10 1 13-19 10.1089/106652703763255642 12676048
-
(2003)
J Comput Biol
, vol.10
, Issue.1
, pp. 13-19
-
-
Schwartz, R.1
Halldorsson, B.V.2
Bafna, V.3
Clark, A.G.4
Istrail, S.5
-
22
-
-
3242694120
-
Large-scale single-nucleotide polymorphism (SNP) and haplotype analyses, using dense SNP Maps, of 199 drug-related genes in 752 subjects: The analysis of the association between uncommon SNPs within haplotype blocks and the haplotypes constructed with haplotype-tagging SNPs
-
1216054 15202072 10.1086/422853
-
Kamatani N Sekine A Kitamoto T Iida A Saito S Kogame A Inoue E Kawamoto M Harigai M Nakamura Y Large-scale single-nucleotide polymorphism (SNP) and haplotype analyses, using dense SNP Maps, of 199 drug-related genes in 752 subjects: The analysis of the association between uncommon SNPs within haplotype blocks and the haplotypes constructed with haplotype-tagging SNPs Am J Hum Genet 2004 75 190-203 1216054 15202072 10.1086/422853
-
(2004)
Am J Hum Genet
, vol.75
, pp. 190-203
-
-
Kamatani, N.1
Sekine, A.2
Kitamoto, T.3
Iida, A.4
Saito, S.5
Kogame, A.6
Inoue, E.7
Kawamoto, M.8
Harigai, M.9
Nakamura, Y.10
-
23
-
-
84886766334
-
SNPHAP version 1.3.1
-
SNPHAP version 1.3.1 http://www-gene.cimr.cam.ac.uk/clayton/software/
-
-
-
|