메뉴 건너뛰기




Volumn 35, Issue 7, 2014, Pages 828-840

CDKN2A Unclassified Variants in Familial Malignant Melanoma: Combining Functional and Computational Approaches for Their Assessment

Author keywords

CDKN2A; Familial melanoma; P16INK4a; Variants of uncertain significance; VUS

Indexed keywords

AMINO ACID; CYCLIN DEPENDENT KINASE INHIBITOR 2A;

EID: 84902011183     PISSN: 10597794     EISSN: 10981004     Source Type: Journal    
DOI: 10.1002/humu.22550     Document Type: Article
Times cited : (17)

References (62)
  • 1
    • 0031047550 scopus 로고    scopus 로고
    • Point mutations can inactivate in vitro and in vivo activities of p16(INK4a)/CDKN2A in human glioma
    • Arap W, Knudsen ES, Wang JY, Cavenee WK, Huang HJ. 1997. Point mutations can inactivate in vitro and in vivo activities of p16(INK4a)/CDKN2A in human glioma. Oncogene 14:603-609.
    • (1997) Oncogene , vol.14 , pp. 603-609
    • Arap, W.1    Knudsen, E.S.2    Wang, J.Y.3    Cavenee, W.K.4    Huang, H.J.5
  • 2
    • 0034797707 scopus 로고    scopus 로고
    • Functional impairment of melanoma-associated p16(INK4a) mutants in melanoma cells despite retention of cyclin-dependent kinase 4 binding
    • Becker TM, Rizos H, Kefford RF, Mann GJ. 2001. Functional impairment of melanoma-associated p16(INK4a) mutants in melanoma cells despite retention of cyclin-dependent kinase 4 binding. Clin Cancer Res 7:3282-3288.
    • (2001) Clin Cancer Res , vol.7 , pp. 3282-3288
    • Becker, T.M.1    Rizos, H.2    Kefford, R.F.3    Mann, G.J.4
  • 6
    • 23144461249 scopus 로고    scopus 로고
    • I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure
    • Web Server issue
    • Capriotti E, Fariselli P, Casadio R. 2005. I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Res 33(Web Server issue):W306-W310.
    • (2005) Nucleic Acids Res , vol.33
    • Capriotti, E.1    Fariselli, P.2    Casadio, R.3
  • 8
    • 33644847172 scopus 로고    scopus 로고
    • Prediction of protein stability changes for single-site mutations using support vector machines
    • Cheng J, Randall A, Baldi P. 2006. Prediction of protein stability changes for single-site mutations using support vector machines. Proteins 62:1125-1132.
    • (2006) Proteins , vol.62 , pp. 1125-1132
    • Cheng, J.1    Randall, A.2    Baldi, P.3
  • 15
    • 55549137442 scopus 로고    scopus 로고
    • Genetic evidence and integration of various data sources for classifying uncertain variants into a single model
    • Goldgar DE, Easton DF, Byrnes GB, Spurdle AB, Iversen ES, Greenblatt MS. 2008. Genetic evidence and integration of various data sources for classifying uncertain variants into a single model. Hum Mutat 29:1265-1272.
    • (2008) Hum Mutat , vol.29 , pp. 1265-1272
    • Goldgar, D.E.1    Easton, D.F.2    Byrnes, G.B.3    Spurdle, A.B.4    Iversen, E.S.5    Greenblatt, M.S.6
  • 19
    • 0030664515 scopus 로고    scopus 로고
    • Inhibition of growth of human leukemia cell lines by retrovirally expressed wild-type p16INK4A
    • Gombart A, Yang R, Campbell M, Berman J, Koeffler H. 1997. Inhibition of growth of human leukemia cell lines by retrovirally expressed wild-type p16INK4A. Leukemia 11:1673-1680.
    • (1997) Leukemia , vol.11 , pp. 1673-1680
    • Gombart, A.1    Yang, R.2    Campbell, M.3    Berman, J.4    Koeffler, H.5
  • 20
    • 0037468254 scopus 로고    scopus 로고
    • Detailed computational study of p53 and p16: using evolutionary sequence analysis and disease-associated mutations to predict the functional consequences of allelic variants
    • Greenblatt MS, Beaudet JG, Gump JR, Godin KS, Trombley L, Koh J, Bond JP. 2003. Detailed computational study of p53 and p16: using evolutionary sequence analysis and disease-associated mutations to predict the functional consequences of allelic variants. Oncogene 22:1150-1163.
    • (2003) Oncogene , vol.22 , pp. 1150-1163
    • Greenblatt, M.S.1    Beaudet, J.G.2    Gump, J.R.3    Godin, K.S.4    Trombley, L.5    Koh, J.6    Bond, J.P.7
  • 22
    • 0036291145 scopus 로고    scopus 로고
    • Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations
    • Guerois R, Nielsen JE, Serrano L. 2002. Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. J Mol Biol 320:369-387.
    • (2002) J Mol Biol , vol.320 , pp. 369-387
    • Guerois, R.1    Nielsen, J.E.2    Serrano, L.3
  • 23
    • 52449115597 scopus 로고    scopus 로고
    • p16INK4a-induced senescence is disabled by melanoma-associated mutations
    • Haferkamp S, Becker TM, Scurr LL, Kefford RF, Rizos H. 2008. p16INK4a-induced senescence is disabled by melanoma-associated mutations. Aging Cell 7:733-745.
    • (2008) Aging Cell , vol.7 , pp. 733-745
    • Haferkamp, S.1    Becker, T.M.2    Scurr, L.L.3    Kefford, R.F.4    Rizos, H.5
  • 26
    • 84875217967 scopus 로고    scopus 로고
    • Familial melanoma-associated mutations in p16 uncouple its tumor-suppressor functions
    • Jenkins NC, Jung J, Liu T, Wilde M, Holmen SL, Grossman D. 2013. Familial melanoma-associated mutations in p16 uncouple its tumor-suppressor functions. J Invest Dermatol 133:1043-1051.
    • (2013) J Invest Dermatol , vol.133 , pp. 1043-1051
    • Jenkins, N.C.1    Jung, J.2    Liu, T.3    Wilde, M.4    Holmen, S.L.5    Grossman, D.6
  • 32
    • 79958845071 scopus 로고    scopus 로고
    • Identification and in silico analysis of novel von Hippel-Lindau (VHL) gene variants from a large population
    • Leonardi E, Martella M, Tosatto SC, Murgia A. 2011. Identification and in silico analysis of novel von Hippel-Lindau (VHL) gene variants from a large population. Ann Hum Genet 75:483-496.
    • (2011) Ann Hum Genet , vol.75 , pp. 483-496
    • Leonardi, E.1    Martella, M.2    Tosatto, S.C.3    Murgia, A.4
  • 36
    • 79960149420 scopus 로고    scopus 로고
    • RING: networking interacting residues, evolutionary information and energetics in protein structures
    • Martin AJ, Vidotto M, Boscariol F, Di Domenico T, Walsh I, Tosatto SC. 2011. RING: networking interacting residues, evolutionary information and energetics in protein structures. Bioinformatics 27:2003-2005.
    • (2011) Bioinformatics , vol.27 , pp. 2003-2005
    • Martin, A.J.1    Vidotto, M.2    Boscariol, F.3    Di Domenico, T.4    Walsh, I.5    Tosatto, S.C.6
  • 40
    • 2442706456 scopus 로고    scopus 로고
    • The ankyrin repeat as molecular architecture for protein recognition
    • Mosavi LK, Cammett TJ, Desrosiers DC, Peng ZY. 2004. The ankyrin repeat as molecular architecture for protein recognition. Protein Sci 13:1435-1448.
    • (2004) Protein Sci , vol.13 , pp. 1435-1448
    • Mosavi, L.K.1    Cammett, T.J.2    Desrosiers, D.C.3    Peng, Z.Y.4
  • 41
    • 0029980941 scopus 로고    scopus 로고
    • Temperature-sensitive mutants of p16CDKN2 associated with familial melanoma
    • Parry D, Peters G. 1996. Temperature-sensitive mutants of p16CDKN2 associated with familial melanoma. Mol Cell Biol 16:3844-3852.
    • (1996) Mol Cell Biol , vol.16 , pp. 3844-3852
    • Parry, D.1    Peters, G.2
  • 42
    • 33747838537 scopus 로고    scopus 로고
    • CUPSAT: prediction of protein stability upon point mutations
    • Web Server issue
    • Parthiban V, Gromiha MM, Schomburg D. 2006. CUPSAT: prediction of protein stability upon point mutations. Nucleic Acids Res 34(Web Server issue):W239-W242.
    • (2006) Nucleic Acids Res , vol.34
    • Parthiban, V.1    Gromiha, M.M.2    Schomburg, D.3
  • 48
    • 0027769876 scopus 로고
    • A new regulatory motif in cell-cycle control causing specific inhibition of cyclin D/CDK4
    • Serrano M, Hannon GJ, Beach D. 1993. A new regulatory motif in cell-cycle control causing specific inhibition of cyclin D/CDK4. Nature 366:704-707.
    • (1993) Nature , vol.366 , pp. 704-707
    • Serrano, M.1    Hannon, G.J.2    Beach, D.3
  • 49
    • 0028171292 scopus 로고
    • G1 phase progression: cycling on cue
    • Sherr CJ. 1994. G1 phase progression: cycling on cue. Cell 79:551-555.
    • (1994) Cell , vol.79 , pp. 551-555
    • Sherr, C.J.1
  • 50
    • 0031585984 scopus 로고    scopus 로고
    • Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
    • Simons KT, Kooperberg C, Huang E, Baker D. 1997. Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. J Mol Biol 268:209-225.
    • (1997) J Mol Biol , vol.268 , pp. 209-225
    • Simons, K.T.1    Kooperberg, C.2    Huang, E.3    Baker, D.4
  • 52
    • 55549145156 scopus 로고    scopus 로고
    • In silico analysis of missense substitutions using sequence-alignment based methods
    • Tavtigian SV, Greenblatt MS, Lesueur F, Byrnes GB. 2008. In silico analysis of missense substitutions using sequence-alignment based methods. Hum Mutat 29:1327-1336.
    • (2008) Hum Mutat , vol.29 , pp. 1327-1336
    • Tavtigian, S.V.1    Greenblatt, M.S.2    Lesueur, F.3    Byrnes, G.B.4
  • 53
    • 84871613264 scopus 로고    scopus 로고
    • A multifactorial likelihood model for MMR gene variant classification incorporating probabilities based on sequence bioinformatics and tumor characteristics: a report from the Colon Cancer Family Registry
    • Thompson BA, Goldgar DE, Paterson C, Clendenning M, Walters R, Arnold S, Parsons MT, Michael DW, Gallinger S, Haile RW, Hopper JL, Jenkins MA, et al. 2012a. A multifactorial likelihood model for MMR gene variant classification incorporating probabilities based on sequence bioinformatics and tumor characteristics: a report from the Colon Cancer Family Registry. Hum Mutat 34:200-209.
    • (2012) Hum Mutat , vol.34 , pp. 200-209
    • Thompson, B.A.1    Goldgar, D.E.2    Paterson, C.3    Clendenning, M.4    Walters, R.5    Arnold, S.6    Parsons, M.T.7    Michael, D.W.8    Gallinger, S.9    Haile, R.W.10    Hopper, J.L.11    Jenkins, M.A.12
  • 56
    • 79960531239 scopus 로고    scopus 로고
    • Friedreich's ataxia variants I154F and W155R diminish frataxin-based activation of the iron-sulfur cluster assembly complex
    • Tsai CL, Bridwell-Rabb J, Barondeau DP. 2011. Friedreich's ataxia variants I154F and W155R diminish frataxin-based activation of the iron-sulfur cluster assembly complex. Biochemistry 50:6478-6487.
    • (2011) Biochemistry , vol.50 , pp. 6478-6487
    • Tsai, C.L.1    Bridwell-Rabb, J.2    Barondeau, D.P.3
  • 57
    • 80054723121 scopus 로고    scopus 로고
    • Molecular dynamics as an approach to study prion protein misfolding and the effect of pathogenic mutations
    • van der Kamp MW, Daggett V. 2011. Molecular dynamics as an approach to study prion protein misfolding and the effect of pathogenic mutations. Top Curr Chem 305:169-197.
    • (2011) Top Curr Chem , vol.305 , pp. 169-197
    • van der Kamp, M.W.1    Daggett, V.2
  • 58
    • 0033013780 scopus 로고    scopus 로고
    • Functional reassessment of P16 variants using a transfection-based assay
    • Walker GJ, Gabrielli BG, Castellano M, Hayward NK. 1999. Functional reassessment of P16 variants using a transfection-based assay. Int J Cancer 82:305-312.
    • (1999) Int J Cancer , vol.82 , pp. 305-312
    • Walker, G.J.1    Gabrielli, B.G.2    Castellano, M.3    Hayward, N.K.4
  • 59
    • 0029033861 scopus 로고
    • The retinoblastoma protein and cell cycle control
    • Weinberg RA. 1995. The retinoblastoma protein and cell cycle control. Cell 81:323-330.
    • (1995) Cell , vol.81 , pp. 323-330
    • Weinberg, R.A.1
  • 60
    • 32544460270 scopus 로고    scopus 로고
    • MLE and Bayesian inference of age-dependent sensitivity and transition probability in periodic screening
    • Wu D, Rosner GL, Broemeling L. 2005. MLE and Bayesian inference of age-dependent sensitivity and transition probability in periodic screening. Biometrics 61:1056-1063.
    • (2005) Biometrics , vol.61 , pp. 1056-1063
    • Wu, D.1    Rosner, G.L.2    Broemeling, L.3
  • 61
    • 0029802930 scopus 로고    scopus 로고
    • Defective folding of mutant p16(INK4) proteins encoded by tumor-derived alleles
    • Zhang B, Peng Z. 1996. Defective folding of mutant p16(INK4) proteins encoded by tumor-derived alleles. J Biol Chem 271:28734-28737.
    • (1996) J Biol Chem , vol.271 , pp. 28734-28737
    • Zhang, B.1    Peng, Z.2
  • 62
    • 0032549711 scopus 로고    scopus 로고
    • ARF promotes MDM2 degradation and stabilizes p53: ARF-INK4a locus deletion impairs both the Rb and p53 tumor suppression pathways
    • Zhang Y, Xiong Y, Yarbrough WG. 1998. ARF promotes MDM2 degradation and stabilizes p53: ARF-INK4a locus deletion impairs both the Rb and p53 tumor suppression pathways. Cell 92:725-734.
    • (1998) Cell , vol.92 , pp. 725-734
    • Zhang, Y.1    Xiong, Y.2    Yarbrough, W.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.