메뉴 건너뛰기




Volumn 10, Issue 2, 2014, Pages

Insights into the Dekkera bruxellensis Genomic Landscape: Comparative Genomics Reveals Variations in Ploidy and Nutrient Utilisation Potential amongst Wine Isolates

Author keywords

[No Author keywords available]

Indexed keywords

NITRATE; BIOFUEL;

EID: 84901742916     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004161     Document Type: Article
Times cited : (76)

References (32)
  • 2
    • 84860006840 scopus 로고    scopus 로고
    • Brewhouse-resident microbiota are responsible for multi-stage fermentation of american coolship ale
    • Bokulich NA, Bamforth CW, Mills DA, (2012) Brewhouse-resident microbiota are responsible for multi-stage fermentation of american coolship ale. PLoS ONE 7: e35507.
    • (2012) PLoS ONE , vol.7
    • Bokulich, N.A.1    Bamforth, C.W.2    Mills, D.A.3
  • 4
    • 34447525645 scopus 로고    scopus 로고
    • Dekkera bruxellensis and Lactobacillus vini form a stable ethanol-producing consortium in a commercial alcohol production process
    • Passoth V, Blomqvist J, Schnürer J, (2007) Dekkera bruxellensis and Lactobacillus vini form a stable ethanol-producing consortium in a commercial alcohol production process. Appl Environ Microbiol 73: 4354-4356.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 4354-4356
    • Passoth, V.1    Blomqvist, J.2    Schnürer, J.3
  • 5
    • 84859021892 scopus 로고    scopus 로고
    • De-Novo Assembly and analysis of the heterozygous triploid genome of the wine spoilage yeast Dekkera bruxellensis AWRI1499
    • Curtin C, Borneman AR, Chambers PJ, Pretorius IS, (2012) De-Novo Assembly and analysis of the heterozygous triploid genome of the wine spoilage yeast Dekkera bruxellensis AWRI1499. PLoS ONE 7: e33840.
    • (2012) PLoS ONE , vol.7
    • Curtin, C.1    Borneman, A.R.2    Chambers, P.J.3    Pretorius, I.S.4
  • 6
    • 84874990532 scopus 로고    scopus 로고
    • Comparative genomics: a revolutionary tool for wine yeast strain development
    • Borneman AR, Pretorius IS, Chambers PJ, (2012) Comparative genomics: a revolutionary tool for wine yeast strain development. Curr Opin Biotech 24: 192-199.
    • (2012) Curr Opin Biotech , vol.24 , pp. 192-199
    • Borneman, A.R.1    Pretorius, I.S.2    Chambers, P.J.3
  • 7
    • 79955879462 scopus 로고    scopus 로고
    • Parallel evolution of the make-accumulate-consume strategy in Saccharomyces and Dekkera yeasts
    • Rozpȩdowska E, Hellborg L, Ishchuk OP, Orhan F, Galafassi S, et al. (2011) Parallel evolution of the make-accumulate-consume strategy in Saccharomyces and Dekkera yeasts. Nat Commun 2: 302.
    • (2011) Nat Commun , vol.2 , pp. 302
    • Rozpȩdowska, E.1    Hellborg, L.2    Ishchuk, O.P.3    Orhan, F.4    Galafassi, S.5
  • 8
    • 33745662870 scopus 로고    scopus 로고
    • Genetic and physiological characterization of Brettanomyces bruxellensis strains isolated from wines
    • Conterno L, Joseph CL, Arvik T, Henick-Kling T, Bisson LF, (2006) Genetic and physiological characterization of Brettanomyces bruxellensis strains isolated from wines. Am J Enol Viticult 57: 139-147.
    • (2006) Am J Enol Viticult , vol.57 , pp. 139-147
    • Conterno, L.1    Joseph, C.L.2    Arvik, T.3    Henick-Kling, T.4    Bisson, L.F.5
  • 9
    • 79958837204 scopus 로고    scopus 로고
    • The ability to use nitrate confers advantage to Dekkera bruxellensis over S. cerevisiae and can explain its adaptation to industrial fermentation processes
    • Barros Pita W, Leite FCB, Souza Liberal AT, Simões DA, de Morais MA, (2011) The ability to use nitrate confers advantage to Dekkera bruxellensis over S. cerevisiae and can explain its adaptation to industrial fermentation processes. A van Leeuw J Microb 100: 99-107.
    • (2011) A Van Leeuw J Microb , vol.100 , pp. 99-107
    • Barros Pita, W.1    Leite, F.C.B.2    Souza Liberal, A.T.3    Simões, D.A.4    de Morais, M.A.5
  • 10
    • 34247874564 scopus 로고    scopus 로고
    • Genome survey sequencing of the wine spoilage yeast Dekkera (Brettanomyces) bruxellensis
    • Woolfit M, Rozpȩdowska E, Piškur J, Wolfe KH, (2007) Genome survey sequencing of the wine spoilage yeast Dekkera (Brettanomyces) bruxellensis. Eukaryotic Cell 6: 721-733.
    • (2007) Eukaryotic Cell , vol.6 , pp. 721-733
    • Woolfit, M.1    Rozpȩdowska, E.2    Piškur, J.3    Wolfe, K.H.4
  • 11
    • 84862249215 scopus 로고    scopus 로고
    • Genotype dependent sulfite tolerance of Australian Dekkera (Brettanomyces) bruxellensis wine isolates
    • Curtin C, Kennedy E, Henschke PA, (2012) Genotype dependent sulfite tolerance of Australian Dekkera (Brettanomyces) bruxellensis wine isolates. Lett Appl Microbiol 55: 56-61.
    • (2012) Lett Appl Microbiol , vol.55 , pp. 56-61
    • Curtin, C.1    Kennedy, E.2    Henschke, P.A.3
  • 12
    • 84862840690 scopus 로고    scopus 로고
    • The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties
    • Piškur J, Ling Z, Marcet-Houben M, Ishchuk OP, Aerts A, et al. (2012) The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties. Int J Food Microbiol 157: 202-209.
    • (2012) Int J Food Microbiol , vol.157 , pp. 202-209
    • Piškur, J.1    Ling, Z.2    Marcet-Houben, M.3    Ishchuk, O.P.4    Aerts, A.5
  • 13
    • 77953139551 scopus 로고    scopus 로고
    • Rapid expansion and functional divergence of subtelomeric gene families in yeasts
    • Brown CA, Murray AW, Verstrepen KJ, (2010) Rapid expansion and functional divergence of subtelomeric gene families in yeasts. Curr Biol 20: 895-903.
    • (2010) Curr Biol , vol.20 , pp. 895-903
    • Brown, C.A.1    Murray, A.W.2    Verstrepen, K.J.3
  • 14
    • 84864642785 scopus 로고    scopus 로고
    • Microevolution of Cryptococcus neoformans driven by massive tandem gene amplification
    • 10.1093/molbev/mss066
    • Chow EWL, Morrow CA, Djordjevic JT, Wood IA, Fraser JA, (2012) Microevolution of Cryptococcus neoformans driven by massive tandem gene amplification. Molecular Biology and Evolution 29: 1987-2000 doi:10.1093/molbev/mss066.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 1987-2000
    • Chow, E.W.L.1    Morrow, C.A.2    Djordjevic, J.T.3    Wood, I.A.4    Fraser, J.A.5
  • 15
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O, (2010) SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224.
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 16
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5
  • 17
    • 72449150687 scopus 로고    scopus 로고
    • Complex Nature of the Genome in a Wine Spoilage Yeast, Dekkera bruxellensis
    • Hellborg L, Piškur J, (2009) Complex Nature of the Genome in a Wine Spoilage Yeast, Dekkera bruxellensis. Eukaryotic Cell 8: 1739-1749.
    • (2009) Eukaryotic Cell , vol.8 , pp. 1739-1749
    • Hellborg, L.1    Piškur, J.2
  • 18
    • 0027998286 scopus 로고
    • Phylogeny of the yeast genera Hanseniaspora (anamorph Kloeckera), Dekkera (anamorph Brettanomyces), and Eeniella as inferred from partial 26S ribosomal DNA nucleotide sequences
    • Boekhout T, Kurtzman CP, O'Donnell K, Smith MT, (1994) Phylogeny of the yeast genera Hanseniaspora (anamorph Kloeckera), Dekkera (anamorph Brettanomyces), and Eeniella as inferred from partial 26S ribosomal DNA nucleotide sequences. Int J Syst Bacteriol 44: 781-786.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 781-786
    • Boekhout, T.1    Kurtzman, C.P.2    O'Donnell, K.3    Smith, M.T.4
  • 19
    • 80052293238 scopus 로고    scopus 로고
    • Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast
    • Libkind D, Hittinger CT, Valério E, Gonçalves C, Dover J, et al. (2011) Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proc Natl Acad Sci USA 108: 14539-14544.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 14539-14544
    • Libkind, D.1    Hittinger, C.T.2    Valério, E.3    Gonçalves, C.4    Dover, J.5
  • 20
    • 80053610821 scopus 로고    scopus 로고
    • Deciphering the hybridisation history leading to the lager lineage based on the mosaic genomes of Saccharomyces bayanus Strains NBRC1948 and CBS380T
    • Nguyen H-V, Legras J-L, Neuvéglise C, Gaillardin C, (2011) Deciphering the hybridisation history leading to the lager lineage based on the mosaic genomes of Saccharomyces bayanus Strains NBRC1948 and CBS380T. PLoS ONE 6: e25821.
    • (2011) PLoS ONE , vol.6
    • Nguyen, H.-V.1    Legras, J.-L.2    Neuvéglise, C.3    Gaillardin, C.4
  • 21
    • 34547897386 scopus 로고    scopus 로고
    • Genetically different wine yeasts isolated from Austrian vine-growing regions influence wine aroma differently and contain putative hybrids between Saccharomyces cerevisiae and Saccharomyces kudriavzevii
    • Lopandic K, Gangl H, Wallner E, Tscheik G, Leitner G, et al. (2007) Genetically different wine yeasts isolated from Austrian vine-growing regions influence wine aroma differently and contain putative hybrids between Saccharomyces cerevisiae and Saccharomyces kudriavzevii. FEMS Yeast Res 7: 953-965.
    • (2007) FEMS Yeast Res , vol.7 , pp. 953-965
    • Lopandic, K.1    Gangl, H.2    Wallner, E.3    Tscheik, G.4    Leitner, G.5
  • 22
    • 84855547158 scopus 로고    scopus 로고
    • The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins
    • Borneman AR, Desany BA, Riches D, Affourtit JP, Forgan AH, et al. (2011) The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins. FEMS Yeast Res 12: 88-96.
    • (2011) FEMS Yeast Res , vol.12 , pp. 88-96
    • Borneman, A.R.1    Desany, B.A.2    Riches, D.3    Affourtit, J.P.4    Forgan, A.H.5
  • 23
    • 84865049155 scopus 로고    scopus 로고
    • Comparative genomics among Saccharomyces cerevisiae x Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins
    • Peris D, Lopes CA, Belloch C, Querol A, Barrio E, (2012) Comparative genomics among Saccharomyces cerevisiae x Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins. BMC Genomics 13: 407.
    • (2012) BMC Genomics , vol.13 , pp. 407
    • Peris, D.1    Lopes, C.A.2    Belloch, C.3    Querol, A.4    Barrio, E.5
  • 24
    • 53549098548 scopus 로고    scopus 로고
    • Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus
    • Dunn BL, Sherlock G, (2008) Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. Genome Res 18: 1610-1623.
    • (2008) Genome Res , vol.18 , pp. 1610-1623
    • Dunn, B.L.1    Sherlock, G.2
  • 25
    • 0029136747 scopus 로고
    • Amino acid and ammonium utilization by Saccharomyces cerevisiae wine yeasts from a chemically defined medium
    • Jiranek V, Langridge P, Henschke PA, (1995) Amino acid and ammonium utilization by Saccharomyces cerevisiae wine yeasts from a chemically defined medium. Am J Enol Viticult 46: 75-83.
    • (1995) Am J Enol Viticult , vol.46 , pp. 75-83
    • Jiranek, V.1    Langridge, P.2    Henschke, P.A.3
  • 26
    • 39349103372 scopus 로고
    • Nitrate determination in California musts and wines
    • Ough C, Crowell EA, (1980) Nitrate determination in California musts and wines. Am J Enol Viticult 31: 344-346.
    • (1980) Am J Enol Viticult , vol.31 , pp. 344-346
    • Ough, C.1    Crowell, E.A.2
  • 27
    • 84876295109 scopus 로고    scopus 로고
    • Utilization of nitrate abolishes the "Custers effect" in Dekkera bruxellensis and determines a different pattern of fermentation products
    • Galafassi S, Capusoni C, Moktaduzzaman M, Compagno C, (2013) Utilization of nitrate abolishes the "Custers effect" in Dekkera bruxellensis and determines a different pattern of fermentation products. J Ind Microbiol Biotechnol 40: 297-303.
    • (2013) J Ind Microbiol Biotechnol , vol.40 , pp. 297-303
    • Galafassi, S.1    Capusoni, C.2    Moktaduzzaman, M.3    Compagno, C.4
  • 28
    • 77950863293 scopus 로고    scopus 로고
    • Remarkably ancient balanced polymorphisms in a multi-locus gene network
    • Hittinger CT, Gonçalves P, Sampaio JP, Dover J, Johnston M, et al. (2010) Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature 464: 54-58.
    • (2010) Nature , vol.464 , pp. 54-58
    • Hittinger, C.T.1    Gonçalves, P.2    Sampaio, J.P.3    Dover, J.4    Johnston, M.5
  • 29
    • 84887411768 scopus 로고    scopus 로고
    • Assimilatory nitrate reduction in Hansenula polymorpha
    • In: Satyanarayana T, Kunze G, editors, Springer
    • Rossi B, Berardi E (2009) Assimilatory nitrate reduction in Hansenula polymorpha. In: Satyanarayana T, Kunze G, editors. Yeast Biotechnology: Diversity and Applications. Springer. pp. 307-320.
    • (2009) Yeast Biotechnology: Diversity and Applications , pp. 307-320
    • Rossi, B.1    Berardi, E.2
  • 31
    • 84863229597 scopus 로고    scopus 로고
    • VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, et al. (2012) VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 22: 568-576.
    • (2012) Genome Res , vol.22 , pp. 568-576
    • Koboldt, D.C.1    Zhang, Q.2    Larson, D.E.3    Shen, D.4    McLellan, M.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.