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Volumn 7, Issue 3, 2012, Pages

De-novo assembly and analysis of the heterozygous triploid genome of the wine spoilage yeast dekkera bruxellensis AWRI1499

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN; OXIDOREDUCTASE;

EID: 84859021892     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0033840     Document Type: Article
Times cited : (101)

References (51)
  • 1
    • 3343007384 scopus 로고    scopus 로고
    • Yeast ecology of Kombucha fermentation
    • Teoh A, Heard G, Cox J, (2004) Yeast ecology of Kombucha fermentation. Int J Food Microbiol 95 (2): 119-126.
    • (2004) Int J Food Microbiol , vol.95 , Issue.2 , pp. 119-126
    • Teoh, A.1    Heard, G.2    Cox, J.3
  • 2
    • 2142746406 scopus 로고    scopus 로고
    • Identification and population dynamics of yeasts in sourdough fermentation processes by PCR-denaturing gradient gel electrophoresis
    • Meroth CB, Hammes WP, Hertel C, (2003) Identification and population dynamics of yeasts in sourdough fermentation processes by PCR-denaturing gradient gel electrophoresis. Appl Environ Microbiol 69: 7453-7461.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 7453-7461
    • Meroth, C.B.1    Hammes, W.P.2    Hertel, C.3
  • 3
    • 34447525645 scopus 로고    scopus 로고
    • Dekkera bruxellensis and Lactobacillus vini form a stable ethanol-producing consortium in a commercial alcohol production process
    • Passoth V, Blomqvist J, Schnürer J, (2007) Dekkera bruxellensis and Lactobacillus vini form a stable ethanol-producing consortium in a commercial alcohol production process. Appl Environ Microbiol 73: 4354-4356.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 4354-4356
    • Passoth, V.1    Blomqvist, J.2    Schnürer, J.3
  • 4
    • 80051701328 scopus 로고    scopus 로고
    • Dekkera/Brettanomyces yeasts for ethanol production from renewable sources under oxygen-limited and low-pH conditions
    • Galafassi S, Merico A, Pizza F, Hellborg L, Molinari F, et al. (2010) Dekkera/Brettanomyces yeasts for ethanol production from renewable sources under oxygen-limited and low-pH conditions. J Ind Microbiol Biotechnol 38 (8): 1079-1088.
    • (2010) J Ind Microbiol Biotechnol , vol.38 , Issue.8 , pp. 1079-1088
    • Galafassi, S.1    Merico, A.2    Pizza, F.3    Hellborg, L.4    Molinari, F.5
  • 5
    • 79958770656 scopus 로고    scopus 로고
    • Fermentation of lignocellulosic hydrolysate by the alternative industrial ethanol yeast Dekkera bruxellensis
    • Blomqvist J, South E, Tiukova L, Momeni MH, Hansson H, et al. (2011) Fermentation of lignocellulosic hydrolysate by the alternative industrial ethanol yeast Dekkera bruxellensis. Lett Appl Microbiol 53: 73-78.
    • (2011) Lett Appl Microbiol , vol.53 , pp. 73-78
    • Blomqvist, J.1    South, E.2    Tiukova, L.3    Momeni, M.H.4    Hansson, H.5
  • 6
  • 8
    • 79955879462 scopus 로고    scopus 로고
    • Parallel evolution of the make-accumulate-consume strategy in Saccharomyces and Dekkera yeasts
    • doi:10.1038/ncomms1305
    • Rozpe{ogonek}dowska E, Hellborg L, Ishchuk OP, Orhan F, Galafassi S, et al. (2011) Parallel evolution of the make-accumulate-consume strategy in Saccharomyces and Dekkera yeasts. Nat Commun 2: 302 doi:10.1038/ncomms1305.
    • (2011) Nat Commun , vol.2 , pp. 302
    • Rozpedowska, E.1    Hellborg, L.2    Ishchuk, O.P.3    Orhan, F.4    Galafassi, S.5
  • 9
    • 0346335820 scopus 로고    scopus 로고
    • Population dynamics and effects of Brettanomyces bruxellensis strains on Pinot noir (Vitis vinifera L.) wines
    • Fugelsang K, (2003) Population dynamics and effects of Brettanomyces bruxellensis strains on Pinot noir (Vitis vinifera L.) wines. Am J Enol Viticult 54 (4): 294-300.
    • (2003) Am J Enol Viticult , vol.54 , Issue.4 , pp. 294-300
    • Fugelsang, K.1
  • 11
    • 77951634067 scopus 로고    scopus 로고
    • Consumer acceptability, sensory properties and expert quality judgements of Australian Cabernet Sauvignon and Shiraz wines
    • Lattey KA, Bramley BR, Francis IL, (2010) Consumer acceptability, sensory properties and expert quality judgements of Australian Cabernet Sauvignon and Shiraz wines. Aust J Grape Wine Res 16: 189-202.
    • (2010) Aust J Grape Wine Res , vol.16 , pp. 189-202
    • Lattey, K.A.1    Bramley, B.R.2    Francis, I.L.3
  • 13
    • 35448988812 scopus 로고    scopus 로고
    • Formation of 4-vinyl and 4-ethyl derivatives from hydroxycinnamic acids: Occurrence of volatile phenolic flavour compounds in beer and distribution of Pad1-activity among brewing yeasts
    • Vanbeneden N, Gils F, Delvaux F, Delvaux FR, (2008) Formation of 4-vinyl and 4-ethyl derivatives from hydroxycinnamic acids: Occurrence of volatile phenolic flavour compounds in beer and distribution of Pad1-activity among brewing yeasts. Food Chem 107 (1): 221-230.
    • (2008) Food Chem , vol.107 , Issue.1 , pp. 221-230
    • Vanbeneden, N.1    Gils, F.2    Delvaux, F.3    Delvaux, F.R.4
  • 14
    • 34247874564 scopus 로고    scopus 로고
    • Genome Survey Sequencing of the Wine Spoilage Yeast Dekkera (Brettanomyces) bruxellensis
    • Woolfit M, Rozpe{ogonek}dowska E, Piškur J, Wolfe KH, (2007) Genome Survey Sequencing of the Wine Spoilage Yeast Dekkera (Brettanomyces) bruxellensis. Eukaryot Cell 6: 721-733.
    • (2007) Eukaryot Cell , vol.6 , pp. 721-733
    • Woolfit, M.1    Rozpedowska, E.2    Piškur, J.3    Wolfe, K.H.4
  • 15
    • 72449150687 scopus 로고    scopus 로고
    • Complex Nature of the Genome in a Wine Spoilage Yeast, Dekkera bruxellensis
    • Hellborg L, Piškur J, (2009) Complex Nature of the Genome in a Wine Spoilage Yeast, Dekkera bruxellensis. Eukaryot Cell 8: 1739-1749.
    • (2009) Eukaryot Cell , vol.8 , pp. 1739-1749
    • Hellborg, L.1    Piškur, J.2
  • 16
    • 77954478011 scopus 로고    scopus 로고
    • Mitochondrial genome from the facultative anaerobe and petite-positive yeast Dekkera bruxellensis contains the NADH dehydrogenase subunit genes
    • Procházka E, Poláková S, Piškur J, Sulo P, (2010) Mitochondrial genome from the facultative anaerobe and petite-positive yeast Dekkera bruxellensis contains the NADH dehydrogenase subunit genes. FEMS Yeast Res 10: 545-557.
    • (2010) FEMS Yeast Res , vol.10 , pp. 545-557
    • Procházka, E.1    Poláková, S.2    Piškur, J.3    Sulo, P.4
  • 18
    • 3242889577 scopus 로고    scopus 로고
    • AUGUSTUS: a web server for gene finding in eukaryotes
    • doi:10.1093/nar/gkh379
    • Stanke M, Steinkamp R, Waack S, Morgenstern B, (2004) AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res 32: W309-12 doi:10.1093/nar/gkh379.
    • (2004) Nucleic Acids Res , vol.32
    • Stanke, M.1    Steinkamp, R.2    Waack, S.3    Morgenstern, B.4
  • 19
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5
  • 21
    • 67649602562 scopus 로고    scopus 로고
    • Genome sequence of the lager brewing yeast, an interspecies hybrid
    • Nakao Y, Kanamori T, Itoh T, Kodama Y, Rainieri S, et al. (2009) Genome sequence of the lager brewing yeast, an interspecies hybrid. DNA Res 16: 115-129.
    • (2009) DNA Res , vol.16 , pp. 115-129
    • Nakao, Y.1    Kanamori, T.2    Itoh, T.3    Kodama, Y.4    Rainieri, S.5
  • 22
    • 27744587351 scopus 로고    scopus 로고
    • Gradual genome stabilisation by progressive reduction of the Saccharomyces uvarum genome in an interspecific hybrid with Saccharomyces cerevisiae
    • Antunovics Z, Nguyen HV, Gaillardin C, Sipiczki M, (2005) Gradual genome stabilisation by progressive reduction of the Saccharomyces uvarum genome in an interspecific hybrid with Saccharomyces cerevisiae. FEMS Yeast Res 5: 1141-1150.
    • (2005) FEMS Yeast Res , vol.5 , pp. 1141-1150
    • Antunovics, Z.1    Nguyen, H.V.2    Gaillardin, C.3    Sipiczki, M.4
  • 24
    • 35148816532 scopus 로고    scopus 로고
    • Adhesion and biofilm production by wine isolates of Brettanomyces bruxellensis
    • Joseph CM, Kumar G, Su E, Bisson LF, (2007) Adhesion and biofilm production by wine isolates of Brettanomyces bruxellensis. Am J Enol Viticult 58 (3): 373-378.
    • (2007) Am J Enol Viticult , vol.58 , Issue.3 , pp. 373-378
    • Joseph, C.M.1    Kumar, G.2    Su, E.3    Bisson, L.F.4
  • 25
    • 0013572716 scopus 로고
    • Dekkera, New Genus of Saccharomycetaceae
    • Van der Walt JP, (1964) Dekkera, New Genus of Saccharomycetaceae. Antonie Van Leeuwenhoek 30: 273-280.
    • (1964) Antonie Van Leeuwenhoek , vol.30 , pp. 273-280
    • van der Walt, J.P.1
  • 26
    • 0030883143 scopus 로고    scopus 로고
    • SSU1 encodes a plasma membrane protein with a central role in a network of proteins conferring sulfite tolerance in Saccharomyces cerevisiae
    • Avram D, Bakalinksy AT, (1997) SSU1 encodes a plasma membrane protein with a central role in a network of proteins conferring sulfite tolerance in Saccharomyces cerevisiae. J Bacteriol 179 (18): 5971-5974.
    • (1997) J Bacteriol , vol.179 , Issue.18 , pp. 5971-5974
    • Avram, D.1    Bakalinksy, A.T.2
  • 28
    • 0032415902 scopus 로고    scopus 로고
    • SSU1-R, a sulfite resistance gene of wine yeast, is an allele of SSU1 with a different upstream sequence
    • Goto-Yamamoto N, Kitano K, Shiki K, Yoshida Y, Suzuki T, et al. (1998) SSU1-R, a sulfite resistance gene of wine yeast, is an allele of SSU1 with a different upstream sequence. J Ferment Bioengineer 86: 427-433.
    • (1998) J Ferment Bioengineer , vol.86 , pp. 427-433
    • Goto-Yamamoto, N.1    Kitano, K.2    Shiki, K.3    Yoshida, Y.4    Suzuki, T.5
  • 29
    • 77953226451 scopus 로고    scopus 로고
    • A sulphite-inducible form of the sulphite efflux gene SSU1 in a Saccharomyces cerevisiae wine yeast
    • Nardi T, Corich V, Giacomini A, Blondin B, (2010) A sulphite-inducible form of the sulphite efflux gene SSU1 in a Saccharomyces cerevisiae wine yeast. Microbiol 156: 1686-1696.
    • (2010) Microbiol , vol.156 , pp. 1686-1696
    • Nardi, T.1    Corich, V.2    Giacomini, A.3    Blondin, B.4
  • 31
    • 84857912358 scopus 로고    scopus 로고
    • Gene cloning, expression, and characterization of a novel acetaldehyde dehydrogenase from Issatchenkia terricola strain XJ-2
    • doi:10.1007/s00253-011-3541-7
    • Yao Z, Zhang C, Lu F, Bie X, Lu Z, (2011) Gene cloning, expression, and characterization of a novel acetaldehyde dehydrogenase from Issatchenkia terricola strain XJ-2. Appl Microbiol Biotechnol doi:10.1007/s00253-011-3541-7.
    • (2011) Appl Microbiol Biotechnol
    • Yao, Z.1    Zhang, C.2    Lu, F.3    Bie, X.4    Lu, Z.5
  • 32
    • 42349106782 scopus 로고    scopus 로고
    • The Ehrlich pathway for fusel alcohol production: a century of research on Saccharomyces cerevisiae metabolism
    • Hazelwood LA, Daran JM, van Maris AJA, Pronk JT, Dickinson JR, (2008) The Ehrlich pathway for fusel alcohol production: a century of research on Saccharomyces cerevisiae metabolism. Appl Environ Microbiol 74: 2259-2266.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 2259-2266
    • Hazelwood, L.A.1    Daran, J.M.2    van Maris, A.J.A.3    Pronk, J.T.4    Dickinson, J.R.5
  • 33
    • 44349084811 scopus 로고    scopus 로고
    • Growth and volatile compound production by Brettanomyces/Dekkera bruxellensis in red wine
    • Romano A, Perello MC, de Revel G, Lonvaud-Funel A, (2008) Growth and volatile compound production by Brettanomyces/Dekkera bruxellensis in red wine. J Appl Microbiol 104: 1577-1585.
    • (2008) J Appl Microbiol , vol.104 , pp. 1577-1585
    • Romano, A.1    Perello, M.C.2    de Revel, G.3    Lonvaud-Funel, A.4
  • 34
    • 33747061543 scopus 로고    scopus 로고
    • The effect of increased yeast alcohol acetyltransferase and esterase activity on the flavour profiles of wine and distillates
    • Lilly M, Bauer FF, Lambrechts MG, Swiegers JH, Cozzolino D, et al. (2006) The effect of increased yeast alcohol acetyltransferase and esterase activity on the flavour profiles of wine and distillates. Yeast 23: 641-659.
    • (2006) Yeast , vol.23 , pp. 641-659
    • Lilly, M.1    Bauer, F.F.2    Lambrechts, M.G.3    Swiegers, J.H.4    Cozzolino, D.5
  • 35
  • 36
    • 44949209518 scopus 로고    scopus 로고
    • Partial vinylphenol reductase purification and characterization from Brettanomyces bruxellensis
    • Tchobanov I, Gal L, Guilloux-Benatier M, Remize F, Nardi T, et al. (2008) Partial vinylphenol reductase purification and characterization from Brettanomyces bruxellensis. FEMS Microbiol Lett 284: 213-217.
    • (2008) FEMS Microbiol Lett , vol.284 , pp. 213-217
    • Tchobanov, I.1    Gal, L.2    Guilloux-Benatier, M.3    Remize, F.4    Nardi, T.5
  • 37
    • 50949122613 scopus 로고    scopus 로고
    • Purification and characterization of a p-coumarate decarboxylase and a vinylphenol reductase from Brettanomyces bruxellensis
    • Godoy L, Martínez C, Carrasco N, Ganga MA, (2008) Purification and characterization of a p-coumarate decarboxylase and a vinylphenol reductase from Brettanomyces bruxellensis. Int J Food Microbiol 127: 6-11.
    • (2008) Int J Food Microbiol , vol.127 , pp. 6-11
    • Godoy, L.1    Martínez, C.2    Carrasco, N.3    Ganga, M.A.4
  • 38
    • 58149145614 scopus 로고    scopus 로고
    • Survey of enzyme activity responsible for phenolic off-flavour production by Dekkera and Brettanomyces yeast
    • Harris V, Ford CM, Jiranek V, Grbin PR, (2008) Survey of enzyme activity responsible for phenolic off-flavour production by Dekkera and Brettanomyces yeast. Appl Microbiol Biotechnol 81: 1117-1127.
    • (2008) Appl Microbiol Biotechnol , vol.81 , pp. 1117-1127
    • Harris, V.1    Ford, C.M.2    Jiranek, V.3    Grbin, P.R.4
  • 39
    • 84857626532 scopus 로고    scopus 로고
    • Purification and properties of phenolic acid decarboxylase from Candida guilliermondii
    • doi:10.1007/s10295-011-0998-4
    • Huang H-K, Tokashiki M, Maeno S, Onaga S, Taira T, et al. (2011) Purification and properties of phenolic acid decarboxylase from Candida guilliermondii. J Ind Microbiol Biotechnol doi:10.1007/s10295-011-0998-4.
    • (2011) J Ind Microbiol Biotechnol
    • Huang, H.-K.1    Tokashiki, M.2    Maeno, S.3    Onaga, S.4    Taira, T.5
  • 40
    • 0006916157 scopus 로고
    • The hydroxycinnamic acid tartaric acid ester content of musts and grape varieties grown in the Pacific Northwest
    • Nagel C, Baranowski J, Wulf LW, Powers JR, (1979) The hydroxycinnamic acid tartaric acid ester content of musts and grape varieties grown in the Pacific Northwest. Am J Enol Viticult 30 (3): 198-201.
    • (1979) Am J Enol Viticult , vol.30 , Issue.3 , pp. 198-201
    • Nagel, C.1    Baranowski, J.2    Wulf, L.W.3    Powers, J.R.4
  • 41
    • 2542581471 scopus 로고    scopus 로고
    • Phenolics in white free run juices and wines from Penedès by High-Performance Liquid Chromatography: changes during vinification
    • Betés-Saura C, Andrés-Lacueva C, Lamuela-Raventós RM, (1996) Phenolics in white free run juices and wines from Penedès by High-Performance Liquid Chromatography: changes during vinification. J Agric Food Chem 44: 3040-3046.
    • (1996) J Agric Food Chem , vol.44 , pp. 3040-3046
    • Betés-Saura, C.1    Andrés-Lacueva, C.2    Lamuela-Raventós, R.M.3
  • 42
    • 80053320517 scopus 로고    scopus 로고
    • Characterisation and evolution of grape polyphenol profiles of Vitis vinifera L. cv. Tannat during ripening and vinification
    • Boido E, Garcίa-Marino M, Dellacassa E, Carrau F, Rivas-Gonzalo JC, et al. (2011) Characterisation and evolution of grape polyphenol profiles of Vitis vinifera L. cv. Tannat during ripening and vinification. Aust J Grape Wine Res 17 (3): 383-393.
    • (2011) Aust J Grape Wine Res , vol.17 , Issue.3 , pp. 383-393
    • Boido, E.1    Garca-Marino, M.2    Dellacassa, E.3    Carrau, F.4    Rivas-Gonzalo, J.C.5
  • 43
    • 38749152420 scopus 로고    scopus 로고
    • Determination of 4-ethylcatechol in wine by high-performance liquid chromatography-coulometric electrochemical array detection
    • Larcher R, Nicolini G, Bertoldi D, Nardin T, (2008) Determination of 4-ethylcatechol in wine by high-performance liquid chromatography-coulometric electrochemical array detection. Anal Chim Acta 609: 235-240.
    • (2008) Anal Chim Acta , vol.609 , pp. 235-240
    • Larcher, R.1    Nicolini, G.2    Bertoldi, D.3    Nardin, T.4
  • 44
    • 43349085441 scopus 로고    scopus 로고
    • Dekkera and Brettanomyces growth and utilisation of hydroxycinnamic acids in synthetic media
    • Harris V, Ford CM, Jiranek V, Grbin PR, (2008) Dekkera and Brettanomyces growth and utilisation of hydroxycinnamic acids in synthetic media. Appl Microbiol Biotechnol 78: 997-1006.
    • (2008) Appl Microbiol Biotechnol , vol.78 , pp. 997-1006
    • Harris, V.1    Ford, C.M.2    Jiranek, V.3    Grbin, P.R.4
  • 45
    • 78651476714 scopus 로고    scopus 로고
    • MIRA: An automated genome and EST assembler
    • Thesis. Ruprecht-Karls University, Duisburg
    • Chevreux B, (2005) MIRA: An automated genome and EST assembler. Thesis. Ruprecht-Karls University, Duisburg.
    • (2005)
    • Chevreux, B.1
  • 46
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, et al. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29: 644-652.
    • (2011) Nat Biotechnol , vol.29 , pp. 644-652
    • Grabherr, M.G.1    Haas, B.J.2    Yassour, M.3    Levin, J.Z.4    Thompson, D.A.5
  • 48
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O, (2010) SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224.
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 49
    • 23144433822 scopus 로고    scopus 로고
    • PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference
    • doi:10.1093/nar/gki352
    • Guindon S, Lethiec F, Duroux P, Gascuel O, (2005) PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33 (suppl 2): W557-W559 doi:10.1093/nar/gki352.
    • (2005) Nucleic Acids Res , vol.33 , Issue.SUPPL. 2
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 50
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert CJ, Roos DS, (2003) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 13: 2178-2189.
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3
  • 51
    • 57649133991 scopus 로고    scopus 로고
    • VENNY. An interactive tool for comparing lists with Venn diagrams
    • Oliveros J, (2007) VENNY. An interactive tool for comparing lists with Venn diagrams. http://bioinfogp.cnb.csic.es/tools/venny/index.html.
    • (2007)
    • Oliveros, J.1


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