-
1
-
-
0001271789
-
Phylogenetic structure of the prokaryotic domain: The primary kingdoms
-
Woese, C. R. &Fox, G. E. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc. Natl Acad. Sci. USA 74, 5088-5090 (1977).
-
(1977)
Proc. Natl Acad. Sci. USA
, vol.74
, pp. 5088-5090
-
-
Woese, C.R.1
Fox, G.E.2
-
2
-
-
33947425547
-
Biosynthesis of ether-type polar lipids in archaea and evolutionary considerations
-
Koga, Y. &Morii, H. Biosynthesis of ether-type polar lipids in archaea and evolutionary considerations. Microbiol. Mol. Biol. Rev. 71, 97-120 (2007).
-
(2007)
Microbiol. Mol. Biol. Rev.
, vol.71
, pp. 97-120
-
-
Koga, Y.1
Morii, H.2
-
3
-
-
0027918584
-
Biology of halophilic bacteria, Part, II. Membrane lipids of extreme halophiles: Biosynthesis, function and evolutionary significance
-
Kates, M. Biology of halophilic bacteria, Part, II. Membrane lipids of extreme halophiles: biosynthesis, function and evolutionary significance. Experientia 49, 1027-1036 (1993).
-
(1993)
Experientia
, vol.49
, pp. 1027-1036
-
-
Kates, M.1
-
4
-
-
0000545467
-
Tetraether bolaform amphiphiles as models of archae-bacterial membrane lipids: Raman spectroscopy, 31P NMR, X-ray scattering, and electron microscopy
-
Thompson, D. H. et al. Tetraether bolaform amphiphiles as models of archae-bacterial membrane lipids: Raman spectroscopy, 31P NMR, X-ray scattering, and electron microscopy. J. Am. Chem. Soc. 114, 9035-9042 (1992).
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 9035-9042
-
-
Thompson, D.H.1
-
5
-
-
0036795638
-
Crenarchaeol: The characteristic core glycerol dibiphytanyl glycerol tetraether membrane lipid of cosmopolitan pelagic crenarchaeota
-
Sinninghe Damsté, J. S., Hopmans, E. C., Schouten, S., van Duin, A. C. T. &Geenevasen, J. A. J. Crenarchaeol: the characteristic core glycerol dibiphytanyl glycerol tetraether membrane lipid of cosmopolitan pelagic crenarchaeota. J. Lipid Res. 43, 1641-1651 (2002).
-
(2002)
J. Lipid Res.
, vol.43
, pp. 1641-1651
-
-
Sinninghe, D.J.S.1
Hopmans, E.C.2
Schouten, S.3
Van Duin, A.C.T.4
Geenevasen, J.A.J.5
-
6
-
-
79953687683
-
Major players on the microbial stage: Why archaea are important
-
Jarrell, K. F. et al. Major players on the microbial stage: why archaea are important. Microbiology 157, 919-936 (2011).
-
(2011)
Microbiology
, vol.157
, pp. 919-936
-
-
Jarrell, K.F.1
-
7
-
-
33747596691
-
Archaeal nitrification in the ocean
-
Wuchter, C. et al. Archaeal nitrification in the ocean. Proc. Natl Acad. Sci. USA 103, 12317-12322 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 12317-12322
-
-
Wuchter, C.1
-
8
-
-
1942532925
-
Origins and evolution of isoprenoid lipid biosynthesis in archaea
-
Boucher, Y., Kamekura, M. &Doolittle, W. F. Origins and evolution of isoprenoid lipid biosynthesis in archaea. Mol. Microbiol. 52, 515-527 (2004).
-
(2004)
Mol. Microbiol.
, vol.52
, pp. 515-527
-
-
Boucher, Y.1
Kamekura, M.2
Doolittle, W.F.3
-
9
-
-
84872141906
-
Phylogenomic investigation of phospholipid synthesis on archaea
-
Lombard, J., Lopez-Garcia, P. &Moreira, D. Phylogenomic investigation of phospholipid synthesis on archaea. Archaea 2012, 630910 (2012).
-
(2012)
Archaea
, vol.2012
, pp. 630910
-
-
Lombard, J.1
Lopez-Garcia, P.2
Moreira, D.3
-
10
-
-
84868591025
-
The organic geochemistry of glycerol dialkyl glycerol tetraether lipids: A review
-
Schouten, S., Hopmans, E. C. &Sinninghe Damsté, J. S. The organic geochemistry of glycerol dialkyl glycerol tetraether lipids: a review. Org. Geochem. 54, 19-61 (2013).
-
(2013)
Org Geochem.
, vol.54
, pp. 19-61
-
-
Schouten, S.1
Hopmans, E.C.2
Sinninghe, D.J.S.3
-
11
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese, C. R., Kandler, O. &Wheelis, M. L. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl Acad. Sci. USA 87, 4576-4579 (1990).
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
12
-
-
33747783953
-
The origin and evolution of Archaea: A state of the art
-
Gribaldo, S. &Brochier-Armanet, C. The origin and evolution of Archaea: a state of the art. Phil. Trans. R. Soc. B 361, 1007-1022 (2006).
-
(2006)
Phil. Trans. R. Soc. B
, vol.361
, pp. 1007-1022
-
-
Gribaldo, S.1
Brochier-Armanet, C.2
-
13
-
-
0025296569
-
Hyperthemophilic microorganisms
-
Stetter, K. O., Fiala, G., Huber, G., Huber, R. &Segerer, A. Hyperthemophilic microorganisms. FEMS Microbiol. Rev. 75, 117-124 (1990).
-
(1990)
FEMS Microbiol. Rev.
, vol.75
, pp. 117-124
-
-
Stetter, K.O.1
Fiala, G.2
Huber, G.3
Huber, R.4
Segerer, A.5
-
15
-
-
84874400864
-
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea
-
Nelson-Sathi, S. et al. Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea. Proc. Natl Acad. Sci. USA http://dx.doi.org/10.1073/pnas.1209119109 (2012).
-
(2012)
Proc. Natl Acad. Sci
-
-
Nelson-Sathi, S.1
-
16
-
-
0034727087
-
The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum
-
Ruepp, A. et al. The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum. Nature 407, 508-5139 (2000).
-
(2000)
Nature
, vol.407
, pp. 508-5139
-
-
Ruepp, A.1
-
17
-
-
79959307333
-
Phylogeny and evolution of the Archaea: One hundred genomes later
-
Brochier-Armanet, C., Forterre, P. &Gribaldo, S. Phylogeny and evolution of the Archaea: one hundred genomes later. Curr. Opin. Microbiol. 14, 274-281 (2011).
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 274-281
-
-
Brochier-Armanet, C.1
Forterre, P.2
Gribaldo, S.3
-
18
-
-
45849112155
-
A korarchaeal genome reveals insights into the evolution of the Archaea
-
Elkins, J. G. et al. A korarchaeal genome reveals insights into the evolution of the Archaea. Proc. Natl Acad. Sci. USA 105, 8102-8107 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 8102-8107
-
-
Elkins, J.G.1
-
19
-
-
0037386511
-
The phylum Nanoarchaeota: Present knowledge and future perspectives of a unique form of life
-
Huber, H., Hohn, M. J., Stetter, K. O. &Rachel, R. The phylum Nanoarchaeota: present knowledge and future perspectives of a unique form of life. Res. Microbiol. 154, 165-171 (2003).
-
(2003)
Res. Microbiol.
, vol.154
, pp. 165-171
-
-
Huber, H.1
Hohn, M.J.2
Stetter, K.O.3
Rachel, R.4
-
20
-
-
39149118031
-
Mesophilic Crenarchaeota: Proposal for a third archaeal phylum, the Thaumarchaeota
-
Brochier-Armanet, C., Boussau, B., Gribaldo, S. &Forterre, P. Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nature Rev. Microbiol. 6, 245-252 (2008).
-
(2008)
Nature Rev. Microbiol.
, vol.6
, pp. 245-252
-
-
Brochier-Armanet, C.1
Boussau, B.2
Gribaldo, S.3
Forterre, P.4
-
21
-
-
79955598535
-
Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
-
Nunoura, T. et al. Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. Nucleic Acids Res. 39, 3204-3223 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3204-3223
-
-
Nunoura, T.1
-
22
-
-
79959289950
-
The Thaumarchaeota: An emerging view of their phylogeny and ecophysiology
-
Pester, M., Schleper, C. &Wagner, M. The Thaumarchaeota: An emerging view of their phylogeny and ecophysiology. Curr. Opin. Microbiol. 14, 300-306 (2011).
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 300-306
-
-
Pester, M.1
Schleper, C.2
Wagner, M.3
-
23
-
-
28244438390
-
Recent advances in structural research on ether lipids from Archaea including comparative and physiological aspects
-
Koga, Y. &Morii, H. Recent advances in structural research on ether lipids from Archaea including comparative and physiological aspects. Biosci. Biotechnol. Biochem. 69, 2019-2034 (2005).
-
(2005)
Biosci. Biotechnol. Biochem.
, vol.69
, pp. 2019-2034
-
-
Koga, Y.1
Morii, H.2
-
24
-
-
0027131330
-
Taxonomic significance of the distribution of component parts of polar ether lipids in methanogens
-
Koga, Y., Akagawa-Matsushita, M., Ohga, M. &Nishihara, M. Taxonomic significance of the distribution of component parts of polar ether lipids in methanogens. Syst. Appl. Microbiol. 16, 342-351 (1993).
-
(1993)
Syst. Appl. Microbiol.
, vol.16
, pp. 342-351
-
-
Koga, Y.1
Akagawa-Matsushita, M.2
Ohga, M.3
Nishihara, M.4
-
25
-
-
0011919685
-
-
(eds Woese, C. R. &Wolfe, R. S.) (Academic Press,)
-
Langworthy, T. A. in The Bacteria (eds Woese, C. R. &Wolfe, R. S.) 459-497 (Academic Press,1985).
-
(1985)
The Bacteria
, pp. 459-497
-
-
Langworthy, T.A.1
-
26
-
-
0035110198
-
Variation in molecular species of polar lipids from Thermoplasma acidophilum depends on growth temperature
-
Uda, I., Sugai, A., Itoh, Y. H. &Itoh, T. Variation in molecular species of polar lipids from Thermoplasma acidophilum depends on growth temperature. Lipids 36, 103-105 (2001).
-
(2001)
Lipids
, vol.36
, pp. 103-105
-
-
Uda, I.1
Sugai, A.2
Itoh, Y.H.3
Itoh, T.4
-
27
-
-
77049091077
-
Archaebacterial bipolar tetraether lipids: Physico-chemical and membrane properties
-
Chong, P. L. G. Archaebacterial bipolar tetraether lipids: physico-chemical and membrane properties. Chem. Phys. Lip. 163, 253-265 (2010).
-
(2010)
Chem. Phys. Lip.
, vol.163
, pp. 253-265
-
-
Chong, L.P.G.1
-
28
-
-
8744242152
-
Tetraether-linked membrane monolayers in Ferroplasma spp: A key to survival in acid
-
Macalady, J. L. et al. Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid. Extremophiles 8, 411-419 (2004).
-
(2004)
Extremophiles
, vol.8
, pp. 411-419
-
-
Macalady, J.L.1
-
29
-
-
79958184764
-
Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing archaea enriched from marine and estuarine sediments
-
Pitcher, A. et al. Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing archaea enriched from marine and estuarine sediments. Appl. Environ. Microbiol. 77, 3468-3477 (2011).
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 3468-3477
-
-
Pitcher, A.1
-
30
-
-
33747139434
-
Isolation of a ubiquitous obligate thermoacidophilic archaeon from deep-sea hydrothermal vents
-
Reysenbach, A. L. et al. Isolation of a ubiquitous obligate thermoacidophilic archaeon from deep-sea hydrothermal vents. Nature 442, 444-447 (2006).
-
(2006)
Nature
, vol.442
, pp. 444-447
-
-
Reysenbach, A.L.1
-
31
-
-
0020050784
-
An asymmetric archaebacterial diether lipid from alkaliphilic halophiles
-
De Rosa, M. et al. An asymmetric archaebacterial diether lipid from alkaliphilic halophiles. J. Gen. Microbiol. 128, 343-348 (1982).
-
(1982)
J. Gen. Microbiol.
, vol.128
, pp. 343-348
-
-
De Rosa, M.1
-
32
-
-
78751566447
-
Isoprenoid biosynthesis in archaea-biochemical and evolutionary implications
-
Matsumi, R., Atomi, H., Driessen, A. J. &van der Oost, J. Isoprenoid biosynthesis in archaea-biochemical and evolutionary implications. Res. Microbiol. 162, 39-52 (2011).
-
(2011)
Res. Microbiol.
, vol.162
, pp. 39-52
-
-
Matsumi, R.1
Atomi, H.2
Driessen, A.J.3
Van Der Oost, J.4
-
34
-
-
33947359261
-
Turnover of di-O-phytanylglycerol in Thermoplasma
-
Langworthy, T. A. Turnover of di-O-phytanylglycerol in Thermoplasma. Rev. Infect. Dis. 4, S266 (1982).
-
(1982)
Rev. Infect. Dis.
, vol.4
-
-
Langworthy, T.A.1
-
35
-
-
0037916321
-
Characterization of the precursor of tetraether lipid biosynthesis in the thermoacidophilic archaeon Thermoplasma acidophilum
-
Nemoto, N., Shida, Y., Shimada, H., Oshima, T. &Yamagishi, A. Characterization of the precursor of tetraether lipid biosynthesis in the thermoacidophilic archaeon Thermoplasma acidophilum. Extremophiles 7, 235-243 (2003).
-
(2003)
Extremophiles
, vol.7
, pp. 235-243
-
-
Nemoto, N.1
Shida, Y.2
Shimada, H.3
Oshima, T.4
Yamagishi, A.5
-
36
-
-
0001606554
-
Biosynthesis of isoprenoid membranes in the methanogenic archaebacterium Methanospirillum hungatei
-
Poulter, C. D., Aoki, T. &Daniels, L. Biosynthesis of isoprenoid membranes in the methanogenic archaebacterium Methanospirillum hungatei. J. Am. Chem. Soc. 110, 2620-2624 (1988).
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 2620-2624
-
-
Poulter, C.D.1
Aoki, T.2
Daniels, L.3
-
37
-
-
0034699116
-
Unusual double-bond migration as plausible key reaction on the synthesis of the isoprenoid membrane lipids of methanogenic archaea
-
Eguchi, T., Takyo, H., Morita, M., Kakinuma, K. &Koga, Y. Unusual double-bond migration as plausible key reaction on the synthesis of the isoprenoid membrane lipids of methanogenic archaea. J. Chem. Soc. Chem. Commun. 2000, 1545-1546 (2000).
-
(2000)
J. Chem. Soc. Chem. Commun.
, vol.2000
, pp. 1545-1546
-
-
Eguchi, T.1
Takyo, H.2
Morita, M.3
Kakinuma, K.4
Koga, Y.5
-
38
-
-
0037436913
-
Importance of the isopropylene terminal of geranylgeranyl group for the formation of tetraether lipid in methanogenic archaea
-
Eguchi, T. Nishimura, Y. &Kakinuma, K. Importance of the isopropylene terminal of geranylgeranyl group for the formation of tetraether lipid in methanogenic archaea. Tetrahedron Lett. 44, 3275-3279 (2003).
-
(2003)
Tetrahedron Lett.
, vol.44
, pp. 3275-3279
-
-
Eguchi, T.1
Nishimura, Y.2
Kakinuma, K.3
-
40
-
-
0033229957
-
Chain-length determination mechanism of isoprenyl diphosphate synthases and implications for molecular evolution
-
Wang, K. &Ohnuma, S. Chain-length determination mechanism of isoprenyl diphosphate synthases and implications for molecular evolution. Trends Biochem. Sci. 24, 445-451 (1999).
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 445-451
-
-
Wang, K.1
Ohnuma, S.2
-
41
-
-
0027217518
-
Purification and characterization of farnesyl diphosphate/geranylgeranyl diphosphate synthase A thermostable bifunctional enzyme from Methanobacterium thermoautotrophicum
-
Chen, A. &Poulter, C. D. Purification and characterization of farnesyl diphosphate/geranylgeranyl diphosphate synthase. A thermostable bifunctional enzyme from Methanobacterium thermoautotrophicum. J. Biol. Chem. 268, 11002-11007 (1993).
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 11002-11007
-
-
Chen, A.1
Poulter, C.D.2
-
42
-
-
77249158769
-
Geranylfarnesyl diphosphate synthase from Methanosarcina mazei: Different role, different evolution
-
Ogawa, T., Yoshimura, T. &Hemmi, H. Geranylfarnesyl diphosphate synthase from Methanosarcina mazei: different role, different evolution. Biochem. Biophys. Res. Commun. 393, 16e20 (2010).
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.393
-
-
Ogawa, T.1
Yoshimura, T.2
Hemmi, H.3
-
44
-
-
0000312562
-
Biosynthesis of archaebacterial ether lipids Formation of ether linkages by prenyltransferases
-
Zhang, D. &Poulter, C. D. Biosynthesis of archaebacterial ether lipids. Formation of ether linkages by prenyltransferases. J. Am. Chem. Soc. 115, 1270-1277 (1993).
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 1270-1277
-
-
Zhang, D.1
Poulter, C.D.2
-
45
-
-
33646837897
-
The crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase reveals an ancient fold for an ancient enzyme
-
Payadeh, J., Fujihashi, M., Gillon, W. &Pai, E. F. The crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase reveals an ancient fold for an ancient enzyme. J. Biol. Chem. 281, 6070-6078 (2006).
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 6070-6078
-
-
Payadeh, J.1
Fujihashi, M.2
Gillon, W.3
Pai, E.F.4
-
46
-
-
80051724197
-
Functional assignment of an enzyme that catalyzes the synthesis of an Archaea-type ether lipid in Bacteria
-
Guldan, H., Matysik, F. M., Bocola, M., Sterner, R. &Babinger, P. Functional assignment of an enzyme that catalyzes the synthesis of an Archaea-type ether lipid in Bacteria. Angew. Chem. Int. Ed. 50, 8188-8191 (2011).
-
(2011)
Angew. Chem. Int. Ed.
, vol.50
, pp. 8188-8191
-
-
Guldan, H.1
Matysik, F.M.2
Bocola, M.3
Sterner, R.4
Babinger, P.5
-
47
-
-
84872510136
-
Insights into TIM-barrel prenyl transferase mechanisms: Crystal structures of PcrB from Bacillus subtilis and Staphylococcus aureus
-
Ren, F. et al. Insights into TIM-barrel prenyl transferase mechanisms: crystal structures of PcrB from Bacillus subtilis and Staphylococcus aureus. ChemBioChem. 14, 195-199 (2013).
-
(2013)
ChemBioChem.
, vol.14
, pp. 195-199
-
-
Ren, F.1
-
48
-
-
9644264034
-
(S)-2,3-Di-O-geranylgeranylglyceryl phosphate synthase from the thermoacidophilic archaeon Sulfolobus solfataricus Molecular cloning and characterization of a membrane-intrinsic prenyltransferase involved in the biosynthesis of archaeal ether-linked membrane lipids
-
Hemmi, H., Shibuya, K., Takahashi, Y., Nakayama, T. &Nishino, T. J. (S)-2,3-Di-O-geranylgeranylglyceryl phosphate synthase from the thermoacidophilic archaeon Sulfolobus solfataricus. Molecular cloning and characterization of a membrane-intrinsic prenyltransferase involved in the biosynthesis of archaeal ether-linked membrane lipids. Biol. Chem. 279, 50197-50203 (2004).
-
(2004)
Biol. Chem.
, vol.279
, pp. 50197-50203
-
-
Hemmi, H.1
Shibuya, K.2
Takahashi, Y.3
Nakayama, T.4
Nishino, T.J.5
-
49
-
-
77956206479
-
Phylogenetic and evolutionary patterns in microbial carotenoid biosynthesis are revealed by comparative genomics
-
Klassen, J. L. Phylogenetic and evolutionary patterns in microbial carotenoid biosynthesis are revealed by comparative genomics. PLoS ONE 5, e11257 (2010).
-
(2010)
PLoS ONE
, vol.5
-
-
Klassen, J.L.1
-
50
-
-
84055197769
-
Novel glycerol dialkanol triols in sediments: Transformation products of glycerol diphytanyl glycerol tetraether lipids or biosynthetic intermediates
-
Knappy, C. S. &Keely, B. J. Novel glycerol dialkanol triols in sediments: transformation products of glycerol diphytanyl glycerol tetraether lipids or biosynthetic intermediates? Chem. Commun. 48, 841-843 (2012).
-
(2012)
Chem. Commun.
, vol.48
, pp. 841-843
-
-
Knappy, C.S.1
Keely, B.J.2
-
51
-
-
84455205510
-
Isoprenoid glycerol dialkanol diethers: A series of novel archaeal lipids in marine sediments
-
Liu, X. -L., Lipp, J. S., Schröder, J. M., Summons, R. E. &Hinrichs, K. -U. Isoprenoid glycerol dialkanol diethers: a series of novel archaeal lipids in marine sediments. Org. Geochem. 43, 50-55 (2012).
-
(2012)
Org. Geochem.
, vol.43
, pp. 50-55
-
-
Liu, X.-L.1
Lipp, J.S.2
Schröder, J.M.3
Summons, R.E.4
Hinrichs, K.-U.5
-
52
-
-
0032215742
-
Structural characterization, ocurrence and fate of archaeal ether-bound acyclic and cyclic biphytanes and corresponding diols in sediments
-
Schouten, S., Hoefs, M. J. L., Koopmans, M. P., Bosch, H. J. &Sinninghe Damsté, J. S. Structural characterization, ocurrence and fate of archaeal ether-bound acyclic and cyclic biphytanes and corresponding diols in sediments. Org. Geochem. 29, 1305-1319 (1998).
-
(1998)
Org. Geochem.
, vol.29
, pp. 1305-1319
-
-
Schouten, S.1
Hoefs, M.J.L.2
Koopmans, M.P.3
Bosch, H.J.4
Sinninghe, D.J.S.5
-
53
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar, R. C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5, 113 (2004).
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
54
-
-
48449106792
-
The Jpred 3 secondary structure prediction server
-
Cole, C., Barber, J. D. &Barton, G. J. The Jpred 3 secondary structure prediction server. Nucleic Acids Res. 35, W197-W201 (2008).
-
(2008)
Nucleic Acids Res.
, vol.35
-
-
Cole, C.1
Barber, J.D.2
Barton, G.J.3
-
55
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
Talavera, G. &Castresana, J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst. Biol. 56, 564-577 (2007).
-
(2007)
Syst. Biol.
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
56
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal, F., Zardoya, R. &Posada, D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21, 2104-2105 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
57
-
-
33845873289
-
Interactive Tree of Life (iTOL): An online tool for phylogenetic tree display and annotation
-
Letunic, I. &Bork, P. Interactive Tree Of Life (iTOL): An online tool for phylogenetic tree display and annotation. Bioinformatics 23, 127-128 (2007).
-
(2007)
Bioinformatics
, vol.23
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
58
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon, S. et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307-321 (2010).
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
-
59
-
-
39849086134
-
-
(eds Margesin, R., Schinner, F., Marx, J. C. &Gerday, C.) (Springer,)
-
Gilichinsky, D. et al. in Psychrophiles: From Biodiversity to Biotechnology (eds Margesin, R., Schinner, F., Marx, J. C. &Gerday, C.) 83-102 (Springer, 2008).
-
(2008)
Psychrophiles: From Biodiversity to Biotechnology
, pp. 83-102
-
-
Gilichinsky, D.1
-
60
-
-
84896522236
-
Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology
-
Legendre, M. et al. Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc. Natl Acad. Sci. USA 111, 4274-4279 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 4274-4279
-
-
Legendre, M.1
-
61
-
-
84896527539
-
Millennial timescale regeneration in a moss from Antarctica
-
Roads, E., Longton, R. E. &Convey, P. Millennial timescale regeneration in a moss from Antarctica. Curr. Biol. 24, R222-R223 (2014).
-
(2014)
Curr. Biol.
, vol.24
-
-
Roads, E.1
Longton, R.E.2
Convey, P.3
-
63
-
-
1842591469
-
Supercooled water brines within permafrost-an unknown ecological niche for microorganisms: A model for astrobiology
-
Gilichinsky, D., Rivkina, E., Shcherbakova, V., Laurinavichuis, K. &Tiedje, J. Supercooled water brines within permafrost-an unknown ecological niche for microorganisms: a model for astrobiology. Astrobiology 3, 331-341 (2003).
-
(2003)
Astrobiology
, vol.3
, pp. 331-341
-
-
Gilichinsky, D.1
Rivkina, E.2
Shcherbakova, V.3
Laurinavichuis, K.4
Tiedje, J.5
-
65
-
-
0011885653
-
Microbiological characterization of cryogenic soils in the Kolymskaya Lowland
-
Spirina, E. &Fedorov-Davydov, D. Microbiological characterization of cryogenic soils in the Kolymskaya Lowland. Eurasian Soil Sci. 31, 1331-1344 (1998).
-
(1998)
Eurasian Soil Sci.
, vol.31
, pp. 1331-1344
-
-
Spirina, E.1
Fedorov-Davydov, D.2
-
66
-
-
84860140179
-
Life at the wedge: The activity and diversity of Arctic ice wedge microbial communities
-
Wilhelm, R. C., Radtke, K. J., Mykytczuk, N. C., Greer, C. W. &Whyte, L. G. Life at the wedge: the activity and diversity of Arctic ice wedge microbial communities. Astrobiology 12, 347-360 (2012).
-
(2012)
Astrobiology
, vol.12
, pp. 347-360
-
-
Wilhelm, R.C.1
Radtke, K.J.2
Mykytczuk, N.C.3
Greer, C.W.4
Whyte, L.G.5
-
67
-
-
20444370276
-
Temperature-dependent shift from labile to recalcitrant carbon sources of arctic heterotrophs
-
Biasi, C. et al. Temperature-dependent shift from labile to recalcitrant carbon sources of arctic heterotrophs. Rapid Commun. Mass Sp. 19, 1401-1408 (2005).
-
(2005)
Rapid Commun. Mass Sp.
, vol.19
, pp. 1401-1408
-
-
Biasi, C.1
-
68
-
-
1842509102
-
Psychrophilic enzymes: Hot topics in cold adaptation
-
Feller, G. &Gerday, C. Psychrophilic enzymes: hot topics in cold adaptation. Nature Rev. Microbiol. 1, 200-208 (2003).
-
(2003)
Nature Rev. Microbiol.
, vol.1
, pp. 200-208
-
-
Feller, G.1
Gerday, C.2
-
69
-
-
80054757000
-
Microbial degradation of aromatic compounds-from one strategy to four
-
Fuchs, G., Boll, M. &Heider, J. Microbial degradation of aromatic compounds-from one strategy to four. Nature Rev. Microbiol. 9, 803-816 (2011).
-
(2011)
Nature Rev. Microbiol.
, vol.9
, pp. 803-816
-
-
Fuchs, G.1
Boll, M.2
Heider, J.3
-
70
-
-
84946825263
-
-
(ed. Yumato, I.) (Caister Academic Press,)
-
Nogi, Y. in Cold-Adapted Microorganisms (ed. Yumato, I.) 33-50 (Caister Academic Press, 2013).
-
(2013)
Cold-Adapted Microorganisms
, pp. 33-50
-
-
Nogi, Y.1
-
71
-
-
33645229839
-
Microbial activity in soils frozen to below -39 C
-
Panikov, N., Flanagan, P., Oechel, W., Mastepanov, M. &Christensen, T. Microbial activity in soils frozen to below -39 C. Soil Biol. Biochem. 38, 785-794 (2006).
-
(2006)
Soil Biol. Biochem.
, vol.38
, pp. 785-794
-
-
Panikov, N.1
Flanagan, P.2
Oechel, W.3
Mastepanov, M.4
Christensen, T.5
-
72
-
-
73949130743
-
Highly specialized microbial diversity in hyper-arid polar desert
-
Pointing, S. B. et al. Highly specialized microbial diversity in hyper-arid polar desert. Proc. Natl Acad. Sci. USA 106, 19964-19969 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 19964-19969
-
-
Pointing, S.B.1
-
73
-
-
70349417821
-
Microarray and real-time PCR analyses of the responses of high-arctic soil bacteria to hydrocarbon pollution and bioremediation treatments
-
Yergeau, E. et al. Microarray and real-time PCR analyses of the responses of high-arctic soil bacteria to hydrocarbon pollution and bioremediation treatments. Appl. Environ. Microbiol. 75, 6258-6267 (2009).
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 6258-6267
-
-
Yergeau, E.1
-
74
-
-
67649424361
-
Landscape distribution of microbial activity in the McMurdo Dry Valleys: Linked biotic processes, hydrology, and geochemistry in a cold desert ecosystem
-
Zeglin, L. H., Sinsabaugh, R. L., Barrett, J. E., Gooseff, M. N. &Takacs-Vesbach, C. D. Landscape distribution of microbial activity in the McMurdo Dry Valleys: linked biotic processes, hydrology, and geochemistry in a cold desert ecosystem. Ecosystems 12, 562-573 (2009).
-
(2009)
Ecosystems
, vol.12
, pp. 562-573
-
-
Zeglin, L.H.1
Sinsabaugh, R.L.2
Barrett, J.E.3
Gooseff, M.N.4
Takacs-Vesbach, C.D.5
-
75
-
-
84872436756
-
Microbial life under extreme energy limitation
-
Hoehler, T. M. &Jørgensen, B. B. Microbial life under extreme energy limitation. Nature Rev. Microbiol. 11, 83-94 (2013).
-
(2013)
Nature Rev. Microbiol.
, vol.11
, pp. 83-94
-
-
Hoehler, T.M.1
Jørgensen, B.B.2
-
76
-
-
84878666353
-
Metagenomics of microbial life in extreme temperature environments
-
Lewin, A., Wentzel, A. &Valla, S. Metagenomics of microbial life in extreme temperature environments. Curr. Opin. Biotechnol. 24, 516-525 (2012).
-
(2012)
Curr. Opin. Biotechnol.
, vol.24
, pp. 516-525
-
-
Lewin, A.1
Wentzel, A.2
Valla, S.3
-
77
-
-
33645697736
-
Mechanism of bacterial adaptation to low temperature
-
Chattopadhyay, M. Mechanism of bacterial adaptation to low temperature. J. Biosci. 31, 157-165 (2006).
-
(2006)
J. Biosci.
, vol.31
, pp. 157-165
-
-
Chattopadhyay, M.1
-
78
-
-
33645498972
-
Psychrophilic microorganisms: Challenges for life
-
D'Amico, S., Collins, T., Marx, J. C., Feller, G. &Gerday, C. Psychrophilic microorganisms: challenges for life. EMBO Rep. 7, 385-389 (2006).
-
(2006)
EMBO Rep.
, vol.7
, pp. 385-389
-
-
D'amico, S.1
Collins, T.2
Marx, J.C.3
Feller, G.4
Gerday, C.5
-
79
-
-
77956503292
-
-
(ed. Margesin, R.) (Springer,)
-
Bakermans, C., Bergholz, P. W., Ayala-del-Río, H. &Tiedje, J. in Permafrost Soils (ed. Margesin, R.) 159-168 (Springer, 2009).
-
(2009)
Permafrost Soils
, pp. 159-168
-
-
Bakermans, C.1
Bergholz, P.W.2
Ayala-Del-Río, H.3
Tiedje, J.4
-
80
-
-
0037290306
-
Effect of selected environmental and physico-chemical factors on bacterial cytoplasmic membranes
-
Denich, T., Beaudette, L., Lee, H. &Trevors, J. Effect of selected environmental and physico-chemical factors on bacterial cytoplasmic membranes. J. Microbiol. Methods 52, 149-182 (2003).
-
(2003)
J. Microbiol. Methods
, vol.52
, pp. 149-182
-
-
Denich, T.1
Beaudette, L.2
Lee, H.3
Trevors, J.4
-
81
-
-
84878283457
-
Bacterial growth at -15 C; Molecular insights from the permafrost bacterium Planococcus halocryophilus Or1
-
Mykytczuk, N. C. et al. Bacterial growth at -15 C; molecular insights from the permafrost bacterium Planococcus halocryophilus Or1. ISME J. 7, 1211-1226 (2013).
-
(2013)
ISME J.
, vol.7
, pp. 1211-1226
-
-
Mykytczuk, N.C.1
-
82
-
-
33845673476
-
Adaptation of the psychrotroph Arthrobacter chlorophenolicus A6 to growth temperature and the presence of phenols by changes in the anteiso/iso ratio of branched fatty acids
-
Unell, M., Kabelitz, N., Jansson, J. K. &Heipieper, H. J. Adaptation of the psychrotroph Arthrobacter chlorophenolicus A6 to growth temperature and the presence of phenols by changes in the anteiso/iso ratio of branched fatty acids. FEMS Microbiol. Lett. 266, 138-143 (2007).
-
(2007)
FEMS Microbiol. Lett.
, vol.266
, pp. 138-143
-
-
Unell, M.1
Kabelitz, N.2
Jansson, J.K.3
Heipieper, H.J.4
-
83
-
-
39849086134
-
-
(eds Margesin, R., Schinner, F., Marx, J. C. &Gerday, C.) (Springer,)
-
Bowman, J. P. in Psychrophiles: from Biodiversity to Biotechnology (eds Margesin, R., Schinner, F., Marx, J. C. &Gerday, C.) 265-284 (Springer, 2008).
-
(2008)
Psychrophiles: From Biodiversity to Biotechnology
, pp. 265-284
-
-
Bowman, J.P.1
-
84
-
-
77955929948
-
The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses
-
Yergeau, E., Hogues, H., Whyte, L. G. &Greer, C. W. The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses. ISME J. 4, 1206-1214 (2010).
-
(2010)
ISME J.
, vol.4
, pp. 1206-1214
-
-
Yergeau, E.1
Hogues, H.2
Whyte, L.G.3
Greer, C.W.4
-
85
-
-
83555174830
-
Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
-
Mackelprang, R. et al. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 480, 368-371 (2011).
-
(2011)
Nature
, vol.480
, pp. 368-371
-
-
Mackelprang, R.1
-
86
-
-
33846222278
-
Characterization of the microbial diversity in a permafrost sample from the Canadian high Arctic using culture-dependent and culture-independent methods
-
Steven, B. et al. Characterization of the microbial diversity in a permafrost sample from the Canadian high Arctic using culture-dependent and culture-independent methods. FEMS Microbiol. Ecol. 59, 513-523 (2007).
-
(2007)
FEMS Microbiol. Ecol.
, vol.59
, pp. 513-523
-
-
Steven, B.1
-
87
-
-
77956094963
-
-
(ed. Margesin, R.) (Springer,)
-
Steven, B., Niederberger, T. D. &Whyte, L. G. in Permafrost Soils (ed. Margesin, R.) 59-72 (Springer, 2009).
-
(2009)
Permafrost Soils
, pp. 59-72
-
-
Steven, B.1
Niederberger, T.D.2
Whyte, L.G.3
-
88
-
-
55849145200
-
Microbial diversity and activity through a permafrost/ground ice core profile from the Canadian high Arctic
-
Steven, B., Pollard, W. H., Greer, C. W. &Whyte, L. G. Microbial diversity and activity through a permafrost/ground ice core profile from the Canadian high Arctic. Environ. Microbiol. 10, 3388-3403 (2008).
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 3388-3403
-
-
Steven, B.1
Pollard, W.H.2
Greer, C.W.3
Whyte, L.G.4
-
89
-
-
0032431854
-
Biogeochemical activity of anaerobic microorganisms from buried permafrost sediments
-
Rivkina, E., Gilichinsky, D., Wagener, S., Tiedje, J. &McGrath, J. Biogeochemical activity of anaerobic microorganisms from buried permafrost sediments. Geomicrobiol. J. 15, 187-193 (1998).
-
(1998)
Geomicrobiol. J.
, vol.15
, pp. 187-193
-
-
Rivkina, E.1
Gilichinsky, D.2
Wagener, S.3
Tiedje, J.4
McGrath, J.5
-
90
-
-
19544380071
-
Aerobic methanotrophic bacteria of cold ecosystems
-
Trotsenko, Y. A. &Khmelenina, V. N. Aerobic methanotrophic bacteria of cold ecosystems. FEMS Microbiol. Ecol. 53, 15-26 (2005).
-
(2005)
FEMS Microbiol. Ecol.
, vol.53
, pp. 15-26
-
-
Trotsenko, Y.A.1
Khmelenina, V.N.2
-
91
-
-
84894042453
-
Discovery of a novel methanogen prevalent in thawing permafrost
-
Mondav, R. et al. Discovery of a novel methanogen prevalent in thawing permafrost. Nature Commun. 5, 3212 (2014).
-
(2014)
Nature Commun.
, vol.5
, pp. 3212
-
-
Mondav, R.1
-
92
-
-
34250759399
-
Microbial populations in Antarctic permafrost: Biodiversity, state, age, and implication for astrobiology
-
Gilichinsky, D. et al. Microbial populations in Antarctic permafrost: biodiversity, state, age, and implication for astrobiology. Astrobiology 7, 275-311 (2007).
-
(2007)
Astrobiology
, vol.7
, pp. 275-311
-
-
Gilichinsky, D.1
-
93
-
-
35448994420
-
Ancient bacteria show evidence of DNA repair
-
Johnson, S. S. et al. Ancient bacteria show evidence of DNA repair. Proc. Natl Acad. Sci. USA 104, 14401-14405 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 14401-14405
-
-
Johnson, S.S.1
-
94
-
-
79960827148
-
Microbial diversity of active layer and permafrost in an acidic wetland from the Canadian High Arctic
-
Wilhelm, R. C., Niederberger, T. D., Greer, C. &Whyte, L. G. Microbial diversity of active layer and permafrost in an acidic wetland from the Canadian High Arctic. Can. J. Microbiol. 57, 303-315 (2011).
-
(2011)
Can. J. Microbiol.
, vol.57
, pp. 303-315
-
-
Wilhelm, R.C.1
Niederberger, T.D.2
Greer, C.3
Whyte, L.G.4
-
96
-
-
33745487526
-
Bacterial diversity in three different Antarctic cold desert mineral soils
-
Smith, J. J., Tow, L. A., Stafford, W., Cary, C. &Cowan, D. A. Bacterial diversity in three different Antarctic cold desert mineral soils. Microb. Ecol. 51, 413-421 (2006).
-
(2006)
Microb. Ecol.
, vol.51
, pp. 413-421
-
-
Smith, J.J.1
Tow, L.A.2
Stafford, W.3
Cary, C.4
Cowan, D.A.5
-
97
-
-
84866556233
-
-
(eds Doran, P. T., Lyons, W. B. &McKnight, D. M.) (Cambridge Univ. Press,)
-
Takacs-Vesbach, C., Zeglin, L., Priscu, J., Barrett, J. &Gooseff, M. in Life in Antarctic Deserts And Other Cold Dry Environments: Astrobiological Analogues (eds Doran, P. T., Lyons, W. B. &McKnight, D. M.) 221-257 (Cambridge Univ. Press, 2010).
-
(2010)
Life in Antarctic Deserts and Other Cold Dry Environments: Astrobiological Analogues
, pp. 221-257
-
-
Takacs-Vesbach, C.1
Zeglin, L.2
Priscu, J.3
Barrett, J.4
Gooseff, M.5
-
98
-
-
84867717106
-
Abiotic factors influence microbial diversity in permanently cold soil horizons of a maritime-associated Antarctic Dry Valley
-
Stomeo, F. et al. Abiotic factors influence microbial diversity in permanently cold soil horizons of a maritime-associated Antarctic Dry Valley. FEMS Microbiol. Ecol. 82, 326-340 (2012).
-
(2012)
FEMS Microbiol. Ecol.
, vol.82
, pp. 326-340
-
-
Stomeo, F.1
-
99
-
-
84865710550
-
Prokaryotic communities and operating metabolisms in the surface and the permafrost of Deception Island (Antarctica)
-
Blanco, Y. et al. Prokaryotic communities and operating metabolisms in the surface and the permafrost of Deception Island (Antarctica). Environ. Microbiol. 14, 2495-2510 (2012).
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 2495-2510
-
-
Blanco, Y.1
-
100
-
-
34250014967
-
Biogeochemistry of methane and methanogenic archaea in permafrost
-
Rivkina, E. et al. Biogeochemistry of methane and methanogenic archaea in permafrost. FEMS Microbiol. Ecol. 61, 1-15 (2007).
-
(2007)
FEMS Microbiol. Ecol.
, vol.61
, pp. 1-15
-
-
Rivkina, E.1
-
101
-
-
36448997449
-
Development of a sensitive radiorespiration method for detecting microbial activity at subzero temperatures
-
Steven, B., Niederberger, T. D., Bottos, E. M., Dyen, M. R. &Whyte, L. G. Development of a sensitive radiorespiration method for detecting microbial activity at subzero temperatures. J. Microbiol. Methods 71, 275-280 (2007).
-
(2007)
J. Microbiol. Methods
, vol.71
, pp. 275-280
-
-
Steven, B.1
Niederberger, T.D.2
Bottos, E.M.3
Dyen, M.R.4
Whyte, L.G.5
-
102
-
-
33745315279
-
Psychrobacter cryohalolentis sp nov and Psychrobacter arcticus sp nov., isolated from Siberian permafrost
-
Bakermans, C. et al. Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost. Int. J. Syst. Evol. Microbiol. 56, 1285-1291 (2006).
-
(2006)
Int. J. Syst. Evol. Microbiol.
, vol.56
, pp. 1285-1291
-
-
Bakermans, C.1
-
103
-
-
66149137302
-
Demequina lutea sp nov., isolated from a high Arctic permafrost soil
-
Finster, K. W., Herbert, R. A., Kjeldsen, K. U., Schumann, P. &Lomstein, B. A. Demequina lutea sp. nov., isolated from a high Arctic permafrost soil. Int. J. Syst. Evol. Microbiol. 59, 649-653 (2009).
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 649-653
-
-
Finster, K.W.1
Herbert, R.A.2
Kjeldsen, K.U.3
Schumann, P.4
Lomstein, B.A.5
-
104
-
-
70350674100
-
Glaciibacter superstes gen nov., sp nov., a novel member of the family Microbacteriaceae isolated from a permafrost ice wedge
-
Katayama, T. et al. Glaciibacter superstes gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from a permafrost ice wedge. Int. J. Syst. Evol. Microbiol. 59, 482-486 (2009).
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 482-486
-
-
Katayama, T.1
-
105
-
-
0033983202
-
Modestobacter multiseptatus gen nov., sp nov., a budding actinomycete from soils of the Asgard Range (Transantarctic Mountains)
-
Mevs, U., Stackebrandt, E., Schumann, P., Gallikowski, C. A. &Hirsch, P. Modestobacter multiseptatus gen. nov., sp. nov., a budding actinomycete from soils of the Asgard Range (Transantarctic Mountains). Int. J. Syst. Evol. Microbiol. 50, 337-346 (2000).
-
(2000)
Int. J. Syst. Evol. Microbiol.
, vol.50
, pp. 337-346
-
-
Mevs, U.1
Stackebrandt, E.2
Schumann, P.3
Gallikowski, C.A.4
Hirsch, P.5
-
106
-
-
84881020568
-
Methanosarcina soligelidi sp nov., a desiccation and freeze-thaw resistant methanogenic archaeon isolated from a Siberian permafrost-affected soil
-
Wagner, D., Schirmack, J., Ganzert, L., Morozova, D. &Mangelsdorf, K. Methanosarcina soligelidi sp. nov., a desiccation and freeze-thaw resistant methanogenic archaeon isolated from a Siberian permafrost-affected soil. Int. J. Syst. Evol. Microbiol. 63, 2986-2991 (2013).
-
(2013)
Int. J. Syst. Evol. Microbiol.
, vol.63
, pp. 2986-2991
-
-
Wagner, D.1
Schirmack, J.2
Ganzert, L.3
Morozova, D.4
Mangelsdorf, K.5
-
107
-
-
70350501184
-
Virgibacillus arcticus sp nov., a moderately halophilic, endospore-forming bacterium from permafrost in the Canadian high Arctic
-
Niederberger, T. D., Steven, B., Charvet, S., Barbier, B. &Whyte, L. G. Virgibacillus arcticus sp. nov., a moderately halophilic, endospore-forming bacterium from permafrost in the Canadian high Arctic. Int. J. Syst. Evol. Microbiol. 59, 2219-2225 (2009).
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 2219-2225
-
-
Niederberger, T.D.1
Steven, B.2
Charvet, S.3
Barbier, B.4
Whyte, L.G.5
-
108
-
-
84855484750
-
-
(ed. Mendez-Vilas, A.) (Formatex Research Center,)
-
Groves, M. R. &de Orué Lucana, D. O. in Current Research, Technology and Education Topics in Applied Microbiology and Microbial Biotechnology (ed. Mendez-Vilas, A.) 33-42 (Formatex Research Center, 2010).
-
(2010)
Current Research, Technology and Education Topics in Applied Microbiology and Microbial Biotechnology
, pp. 33-42
-
-
Groves, M.R.1
De Orué, L.D.O.2
-
109
-
-
79151472472
-
Extended survival of several organisms and amino acids under simulated Martian surface conditions
-
Johnson, A. P. et al. Extended survival of several organisms and amino acids under simulated Martian surface conditions. Icarus 211, 1162-1178 (2011).
-
(2011)
Icarus
, vol.211
, pp. 1162-1178
-
-
Johnson, A.P.1
-
110
-
-
0030613422
-
Characterization of viable bacteria from Siberian permafrost by 16S rDNA sequencing
-
Shi, T., Reeves, R., Gilichinsky, D. &Friedmann, E. Characterization of viable bacteria from Siberian permafrost by 16S rDNA sequencing. Microb. Ecol. 33, 169-179 (1997).
-
(1997)
Microb. Ecol.
, vol.33
, pp. 169-179
-
-
Shi, T.1
Reeves, R.2
Gilichinsky, D.3
Friedmann, E.4
-
111
-
-
0034202217
-
Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments
-
Vishnivetskaya, T., Kathariou, S., McGrath, J., Gilichinsky, D. &Tiedje, J. M. Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments. Extremophiles 4, 165-173 (2000).
-
(2000)
Extremophiles
, vol.4
, pp. 165-173
-
-
Vishnivetskaya, T.1
Kathariou, S.2
McGrath, J.3
Gilichinsky, D.4
Tiedje, J.M.5
-
112
-
-
84872189417
-
Growth of Carnobacterium spp from permafrost under low pressure, temperature, and anoxic atmosphere has implications for Earth microbes on Mars
-
Nicholson, W. L., Krivushin, K., Gilichinsky, D. &Schuerger, A. C. Growth of Carnobacterium spp. from permafrost under low pressure, temperature, and anoxic atmosphere has implications for Earth microbes on Mars. Proc. Natl Acad. Sci. USA 110, 666-671 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 666-671
-
-
Nicholson, W.L.1
Krivushin, K.2
Gilichinsky, D.3
Schuerger, A.C.4
-
113
-
-
84889590898
-
Celerinatantimonas yamalensis sp nov., a cold-adapted diazotrophic bacterium from a cold permafrost brine
-
Shcherbakova, V. et al. Celerinatantimonas yamalensis sp. nov., a cold-adapted diazotrophic bacterium from a cold permafrost brine. Int. J. Syst. Evol. Microbiol. 63, 4421-4427 (2013).
-
(2013)
Int. J. Syst. Evol. Microbiol.
, vol.63
, pp. 4421-4427
-
-
Shcherbakova, V.1
-
114
-
-
76549101698
-
Methanobacterium veterum sp nov., from ancient Siberian permafrost
-
Krivushin, K. V., Shcherbakova, V. A., Petrovskaya, L. E. &Rivkina, E. M. Methanobacterium veterum sp. nov., from ancient Siberian permafrost. Int. J. Syst. Evol. Microbiol. 60, 455-459 (2010).
-
(2010)
Int. J. Syst. Evol. Microbiol.
, vol.60
, pp. 455-459
-
-
Krivushin, K.V.1
Shcherbakova, V.A.2
Petrovskaya, L.E.3
Rivkina, E.M.4
-
115
-
-
78651459724
-
Methanobacterium arcticum sp nov., a methanogenic archaeon from Holocene Arctic permafrost
-
Shcherbakova, V. et al. Methanobacterium arcticum sp. nov., a methanogenic archaeon from Holocene Arctic permafrost. Int. J. Syst. Evol. Microbiol. 61, 144-147 (2011).
-
(2011)
Int. J. Syst. Evol. Microbiol.
, vol.61
, pp. 144-147
-
-
Shcherbakova, V.1
-
116
-
-
79952900909
-
-
(ed. Margesin, R.) x(Springer,)
-
Ozerskaya, S., Kochkina, G., Ivanushkina, N. &Gilichinsky, D. A. in Permafrost soils (ed. Margesin, R.) 85-95 (Springer, 2009).
-
(2009)
Permafrost Soils
, pp. 2009
-
-
Ozerskaya, S.1
Kochkina, G.2
Ivanushkina, N.3
Gilichinsky, D.A.4
-
117
-
-
84859443964
-
Searching for eukaryotic life preserved in Antarctic permafrost
-
Zucconi, L. et al. Searching for eukaryotic life preserved in Antarctic permafrost. Polar Biol. 35, 749-757 (2012).
-
(2012)
Polar Biol.
, vol.35
, pp. 749-757
-
-
Zucconi, L.1
-
118
-
-
1842585021
-
Temperature dependence of metabolic rates for microbial growth, maintenance, and survival
-
Price, P. B. &Sowers, T. Temperature dependence of metabolic rates for microbial growth, maintenance, and survival. Proc. Natl Acad. Sci. USA 101, 4631-4636 (2004).
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 4631-4636
-
-
Price, P.B.1
Sowers, T.2
-
119
-
-
78649508781
-
Implications of subzero metabolic activity on long-term microbial survival in terrestrial and extraterrestrial permafrost
-
Amato, P., Doyle, S. M., Battista, J. R. &Christner, B. C. Implications of subzero metabolic activity on long-term microbial survival in terrestrial and extraterrestrial permafrost. Astrobiology 10, 789-798 (2010).
-
(2010)
Astrobiology
, vol.10
, pp. 789-798
-
-
Amato, P.1
Doyle, S.M.2
Battista, J.R.3
Christner, B.C.4
-
120
-
-
77950213736
-
The genome sequence of Psychrobacter arcticus 273-274, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth
-
Ayala-del-Río, H. L. et al. The genome sequence of Psychrobacter arcticus 273-274, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth. Appl. Environ. Microbiol. 76, 2304-2312 (2010).
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 2304-2312
-
-
Ayala-Del-Río, H.L.1
-
121
-
-
0036947129
-
Incorporation of DNA and protein precursors into macromolecules by bacteria at -15 C
-
Christner, B. C. Incorporation of DNA and protein precursors into macromolecules by bacteria at -15 C. Appl. Environ. Microbiol. 68, 6435-6438 (2002).
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 6435-6438
-
-
Christner, B.C.1
-
122
-
-
33749074755
-
Bacterial incorporation of leucine into protein down to -20 C with evidence for potential activity in sub-eutectic saline ice formations
-
Junge, K., Eicken, H., Swanson, B. D. &Deming, J. W. Bacterial incorporation of leucine into protein down to -20 C with evidence for potential activity in sub-eutectic saline ice formations. Cryobiology 52, 417-429 (2006).
-
(2006)
Cryobiology
, vol.52
, pp. 417-429
-
-
Junge, K.1
Eicken, H.2
Swanson, B.D.3
Deming, J.W.4
-
123
-
-
33846203704
-
Growth kinetics of microorganisms isolated from Alaskan soil and permafrost in solid media frozen down to ?35 C
-
Panikov, N. S. &Sizova, M. V. Growth kinetics of microorganisms isolated from Alaskan soil and permafrost in solid media frozen down to ?35 C. FEMS Microbiol. Ecol. 59, 500-512 (2007).
-
(2007)
FEMS Microbiol. Ecol.
, vol.59
, pp. 500-512
-
-
Panikov, N.S.1
Sizova, M.V.2
-
124
-
-
0033868840
-
Metabolic activity of permafrost bacteria below the freezing point
-
Rivkina, E., Friedmann, E., McKay, C. &Gilichinsky, D. Metabolic activity of permafrost bacteria below the freezing point. Appl. Environ. Microbiol. 66, 3230-3233 (2000).
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 3230-3233
-
-
Rivkina, E.1
Friedmann, E.2
McKay, C.3
Gilichinsky, D.4
-
125
-
-
58149510474
-
Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
-
Rodrigues, D. F. et al. Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach. BMC Genomics 9, 547 (2008).
-
(2008)
BMC Genomics
, vol.9
, pp. 547
-
-
Rodrigues, D.F.1
-
126
-
-
84855680940
-
Desulfovibrio arcticus sp nov., a psychrotolerant sulfate-reducing bacterium from a cryopeg
-
Pecheritsyna, S. A., Rivkina, E. M., Akimov, V. N. &Shcherbakova, V. A. Desulfovibrio arcticus sp. nov., a psychrotolerant sulfate-reducing bacterium from a cryopeg. Int. J. Syst. Evol. Microbiol. 62, 33-37 (2012).
-
(2012)
Int. J. Syst. Evol. Microbiol.
, vol.62
, pp. 33-37
-
-
Pecheritsyna, S.A.1
Rivkina, E.M.2
Akimov, V.N.3
Shcherbakova, V.A.4
-
127
-
-
79958218023
-
Chryseobacterium xinjiangense sp nov., isolated from alpine permafrost
-
Zhao, Q. et al. Chryseobacterium xinjiangense sp. nov., isolated from alpine permafrost. Int. J. Syst. Evol. Microbiol. 61, 1397-1401 (2011).
-
(2011)
Int. J. Syst. Evol. Microbiol.
, vol.61
, pp. 1397-1401
-
-
Zhao, Q.1
-
128
-
-
13244265797
-
Carnobacterium pleistocenium sp nov., a novel psychrotolerant, facultative anaerobe isolated from permafrost of the Fox Tunnel in Alaska
-
Pikuta, E. V. et al. Carnobacterium pleistocenium sp. nov., a novel psychrotolerant, facultative anaerobe isolated from permafrost of the Fox Tunnel in Alaska. Int. J. Syst. Evol. Microbiol. 55, 473-478 (2005).
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 473-478
-
-
Pikuta, E.V.1
-
129
-
-
21744458941
-
Novel psychrophilic anaerobic spore-forming bacterium from the overcooled water brine in permafrost: Description Clostridium algoriphilum sp
-
Shcherbakova, V. et al. Novel psychrophilic anaerobic spore-forming bacterium from the overcooled water brine in permafrost: description Clostridium algoriphilum sp. nov. Extremophiles 9, 239-246 (2005).
-
(2005)
Nov. Extremophiles
, vol.9
, pp. 239-246
-
-
Shcherbakova, V.1
-
130
-
-
77955102352
-
Quantifying e coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Taniguchi, Y. et al. Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329, 533-538 (2010).
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
-
131
-
-
44449173133
-
Genomics of an extreme psychrophile, Psychromonas ingrahamii
-
Riley, M. et al. Genomics of an extreme psychrophile, Psychromonas ingrahamii. BMC Genomics 9, 210 (2008).
-
(2008)
BMC Genomics
, vol.9
, pp. 210
-
-
Riley, M.1
-
133
-
-
64049094509
-
Psychrobacter arcticus 273-274 uses resource efficiency and molecular motion adaptations for subzero temperature growth
-
Bergholz, P. W., Bakermans, C. &Tiedje, J. M. Psychrobacter arcticus 273-274 uses resource efficiency and molecular motion adaptations for subzero temperature growth. J. Bacteriol. 191, 2340-2352 (2009).
-
(2009)
J. Bacteriol.
, vol.191
, pp. 2340-2352
-
-
Bergholz, P.W.1
Bakermans, C.2
Tiedje, J.M.3
-
134
-
-
72949101201
-
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
-
Wu, D. et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 462, 1056-1060 (2009).
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
-
135
-
-
77953807223
-
One bacterial cell, one complete genome
-
Woyke, T. et al. One bacterial cell, one complete genome. PLoS ONE 5, e10314 (2010).
-
(2010)
PLoS ONE
, vol.5
-
-
Woyke, T.1
-
136
-
-
84878549008
-
Metagenomic insights into anaerobic metabolism along an Arctic peat soil profile
-
Lipson, D. A. et al. Metagenomic insights into anaerobic metabolism along an Arctic peat soil profile. PLoS ONE 8, e64659 (2013).
-
(2013)
PLoS ONE
, vol.8
-
-
Lipson, D.A.1
-
137
-
-
0027166941
-
Trehalose metabolism in Escherichia coli: Stress protection and stress regulation of gene expression
-
Strom, A. &Kaasen, I. Trehalose metabolism in Escherichia coli: stress protection and stress regulation of gene expression. Mol. Microbiol. 8, 205-210 (1993).
-
(1993)
Mol. Microbiol.
, vol.8
, pp. 205-210
-
-
Strom, A.1
Kaasen, I.2
-
138
-
-
84874771233
-
Predicting long-term carbon mineralization and trace gas production from thawing permafrost of Northeast Siberia
-
Knoblauch, C., Beer, C., Sosnin, A., Wagner, D. &Pfeiffer, E. M. Predicting long-term carbon mineralization and trace gas production from thawing permafrost of Northeast Siberia. Glob. Change Biol. 19, 1160-1172 (2013).
-
(2013)
Glob. Change Biol.
, vol.19
, pp. 1160-1172
-
-
Knoblauch, C.1
Beer, C.2
Sosnin, A.3
Wagner, D.4
Pfeiffer, E.M.5
-
139
-
-
84891156835
-
Bacterial genome replication at subzero temperatures in permafrost
-
Tuorto, S. J. et al. Bacterial genome replication at subzero temperatures in permafrost. ISME J. 8, 139-149 (2014).
-
(2014)
ISME J.
, vol.8
, pp. 139-149
-
-
Tuorto, S.J.1
-
140
-
-
0036583741
-
Discovery of viable methanotrophic bacteria in permafrost sediments of Northeast Siberia
-
(Springer,)
-
Khmelenina, V. et al. Discovery of viable methanotrophic bacteria in permafrost sediments of Northeast Siberia. Doklady Biol. Sci. 235-237 (Springer, 2002).
-
(2002)
Doklady Biol. Sci
, pp. 235-237
-
-
Khmelenina, V.1
-
141
-
-
79955674907
-
Geomicrobiology and occluded O2-CO2-Ar gas analyses provide evidence of microbial respiration in ancient terrestrial ground ice
-
Lacelle, D. et al. Geomicrobiology and occluded O2-CO2-Ar gas analyses provide evidence of microbial respiration in ancient terrestrial ground ice. Earth Planet. Sci. Lett. 306, 46-54 (2011).
-
(2011)
Earth Planet. Sci. Lett.
, vol.306
, pp. 46-54
-
-
Lacelle, D.1
-
142
-
-
0343133897
-
Carbon dioxide fluxes of soils and mosses in wet tundra of Taimyr Peninsula, Siberia: Controlling factors and contribution to net system fluxes
-
Sommerkorn, M., Bölter, M. &Kappen, L. Carbon dioxide fluxes of soils and mosses in wet tundra of Taimyr Peninsula, Siberia: controlling factors and contribution to net system fluxes. Polar Res. 18, 253-260 (1999).
-
(1999)
Polar Res.
, vol.18
, pp. 253-260
-
-
Sommerkorn, M.1
Bölter, M.2
Kappen, L.3
-
143
-
-
84889413009
-
-
(eds Senesi, N., Xing, B. &Huang, P. M.) (Wiley,)
-
Torn, M., Swanston, C., Castanha, C. &Trumbore, S. in Biophysico-chemical Processes Involving Natural Nonliving Organic Matter in Environmental Systems. (eds Senesi, N., Xing, B. &Huang, P. M.) 219-272 (Wiley, 2009).
-
(2009)
Biophysico-chemical Processes Involving Natural Nonliving Organic Matter in Environmental Systems.
, pp. 219-272
-
-
Torn, M.1
Swanston, C.2
Castanha, C.3
Trumbore, S.4
-
144
-
-
84861686107
-
Geologic methane seeps along boundaries of Arctic permafrost thaw and melting glaciers
-
Anthony, K. M. W., Anthony, P., Grosse, G. &Chanton, J. Geologic methane seeps along boundaries of Arctic permafrost thaw and melting glaciers. Nature Geosci. 5, 419-426 (2012).
-
(2012)
Nature Geosci.
, vol.5
, pp. 419-426
-
-
Anthony, K.M.W.1
Anthony, P.2
Grosse, G.3
Chanton, J.4
-
145
-
-
70349556766
-
Soil organic carbon pools in the northern circumpolar permafrost region
-
Tarnocai, C. et al. Soil organic carbon pools in the northern circumpolar permafrost region. Global Biogeochem. Cyc. 23, GB2023 (2009).
-
(2009)
Global Biogeochem. Cyc.
, vol.23
-
-
Tarnocai, C.1
-
146
-
-
84858863009
-
Microbes in thawing permafrost: The unknown variable in the climate change equation
-
Graham, D. E. et al. Microbes in thawing permafrost: the unknown variable in the climate change equation. ISME J. 6, 709-712 (2011).
-
(2011)
ISME J.
, vol.6
, pp. 709-712
-
-
Graham, D.E.1
-
147
-
-
84874771233
-
Predicting long-term carbon mineralization and trace gas production from thawing permafrost of Northeast Siberia
-
Knoblauch, C., Beer, C., Sosnin, A., Wagner, D. &Pfeiffer, E. M. Predicting long-term carbon mineralization and trace gas production from thawing permafrost of Northeast Siberia. Glob. Change Biol. 19, 1160-1172 (2013).
-
(2013)
Glob. Change Biol.
, vol.19
, pp. 1160-1172
-
-
Knoblauch, C.1
Beer, C.2
Sosnin, A.3
Wagner, D.4
Pfeiffer, E.M.5
-
148
-
-
84901217517
-
Changes in climate extremes and their impacts on the natural physical environment: An overview of the IPCC SREX report
-
Seneviratne, S. et al. Changes in climate extremes and their impacts on the natural physical environment: An overview of the IPCC SREX report. EGU General Assembly Conference Abstracts 14, 12566 (2012).
-
(2012)
EGU General Assembly Conference Abstracts
, vol.14
, pp. 12566
-
-
Seneviratne, S.1
-
149
-
-
78650291361
-
A model-data intercomparison of CO2 exchange across north america: Results from the north american carbon program site synthesis
-
Schwalm, C. R. et al. A model-data intercomparison of CO2 exchange across North America: results from the North American Carbon Program site synthesis. J. Geophys. Res. 115, G00H05 (2010).
-
(2010)
J. Geophys. Res.
, vol.115
-
-
Schwalm, C.R.1
-
150
-
-
0002509331
-
Global distribution and migration of subsurface ice on Mars
-
Fanale, F. P., Salvail, J. R., Zent, A. P. &Postawko, S. E. Global distribution and migration of subsurface ice on Mars. Icarus 67, 1-18 (1986).
-
(1986)
Icarus
, vol.67
, pp. 1-18
-
-
Fanale, F.P.1
Salvail, J.R.2
Zent, A.P.3
Postawko, S.E.4
-
151
-
-
38549180029
-
Periods of active permafrost layer formation during the geological history of Mars: Implications for circum-polar and mid-latitude surface processes
-
Kreslavsky, M. A., Head, J. W. &Marchant, D. R. Periods of active permafrost layer formation during the geological history of Mars: implications for circum-polar and mid-latitude surface processes. Planet. Space Sci. 56, 289-302 (2008).
-
(2008)
Planet. Space Sci.
, vol.56
, pp. 289-302
-
-
Kreslavsky, M.A.1
Head, J.W.2
Marchant, D.R.3
-
152
-
-
67651102895
-
Clostridium tagluense sp nov., a psychrotolerant, anaerobic, spore-forming bacterium from permafrost
-
Suetin, S. V. et al. Clostridium tagluense sp. nov., a psychrotolerant, anaerobic, spore-forming bacterium from permafrost. Int. J. Syst. Evol. Microbiol. 59, 1421-1426 (2009).
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 1421-1426
-
-
Suetin, S.V.1
-
153
-
-
47049123857
-
Desulfosporosinus hippei sp nov., a mesophilic sulfate-reducing bacterium isolated from permafrost
-
Vatsurina, A., Badrutdinova, D., Schumann, P., Spring, S. &Vainshtein, M. Desulfosporosinus hippei sp. nov., a mesophilic sulfate-reducing bacterium isolated from permafrost. Int. J. Syst. Evol. Microbiol. 58, 1228-1232 (2008).
-
(2008)
Int. J. Syst. Evol. Microbiol.
, vol.58
, pp. 1228-1232
-
-
Vatsurina, A.1
Badrutdinova, D.2
Schumann, P.3
Spring, S.4
Vainshtein, M.5
-
154
-
-
0036239754
-
Bacterial osmoadaptation: The role of osmolytes in bacterial stress and virulence
-
Sleator, R. D. &Hill, C. Bacterial osmoadaptation: the role of osmolytes in bacterial stress and virulence. FEMS Microbiol. Rev. 26, 49-71 (2002).
-
(2002)
FEMS Microbiol. Rev.
, vol.26
, pp. 49-71
-
-
Sleator, R.D.1
Hill, C.2
|