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Volumn 8, Issue 1, 2014, Pages 139-149

Bacterial genome replication at subzero temperatures in permafrost

Author keywords

cryobiology; permafrost; SIP; subzero

Indexed keywords

CARBON; RNA 16S;

EID: 84891156835     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2013.140     Document Type: Article
Times cited : (94)

References (49)
  • 1
    • 35148876984 scopus 로고    scopus 로고
    • Rapid screening of a large insert BAC library for specific 16S rRNA genes using TRFLP
    • DOI 10.1016/j.mimet.2007.07.015, PII S0167701207002606
    • Babcock DA,Wawrik B, Paul JH, McGuinness L, Kerkhof LJ. (2007). Rapid screening of a large insert BAC library for specific 16S rRNA genes using TRFLP. J Microbiol Meth 71: 156-161. (Pubitemid 47538766)
    • (2007) Journal of Microbiological Methods , vol.71 , Issue.2 , pp. 156-161
    • Babcock, D.A.1    Wawrik, B.2    Paul, J.H.3    McGuinness, L.4    Kerkhof, L.J.5
  • 2
    • 1842558988 scopus 로고    scopus 로고
    • Relationship of Critical Temperature to Macromolecular Synthesis and Growth Yield in Psychrobacter cryopegella
    • DOI 10.1128/JB.186.8.2340-2345.2004
    • Bakermans C, Nealson KH. (2004). Relationship of critical temperature to macromolecular synthesis and growth yield in Psychrobacter cryopegella. J Bacteriol 186: 2340-2345. (Pubitemid 38451837)
    • (2004) Journal of Bacteriology , vol.186 , Issue.8 , pp. 2340-2345
    • Bakermans, C.1    Nealson, K.H.2
  • 3
    • 64049094509 scopus 로고    scopus 로고
    • Psychrobacter arcticus 273-4 uses resource efficiency and molecular motion adaptations for subzero temperature growth
    • Bergholz PW, Bakermans C, Tiedje JM. (2009). Psychrobacter arcticus 273-4 uses resource efficiency and molecular motion adaptations for subzero temperature growth. J Bacteriol 191: 2340-2352.
    • (2009) J Bacteriol , vol.191 , pp. 2340-2352
    • Bergholz, P.W.1    Bakermans, C.2    Tiedje, J.M.3
  • 4
    • 77954683992 scopus 로고    scopus 로고
    • Elevated bacterial abundance and exopolymers in saline frost flowers and implications for atmospheric chemistry and microbial dispersal
    • doi: 10.1029/ 2010GL043020
    • Bowman JS, Deming JW. (2010). Elevated bacterial abundance and exopolymers in saline frost flowers and implications for atmospheric chemistry and microbial dispersal. Geophys Res Lett 37: doi: 10.1029/ 2010GL043020.
    • (2010) Geophys Res Lett , vol.37
    • Bowman, J.S.1    Deming, J.W.2
  • 6
    • 0036947129 scopus 로고    scopus 로고
    • Incorporation of DNA and protein precursors into macromolecules by bacteria at -15°C
    • DOI 10.1128/AEM.68.12.6435-6438.2002
    • Christner BC. (2002). Incorporation of DNA and protein precursors into macromolecules by bacteria at -15 1C. Appl Environ Microbiol 68: 6435-6438. (Pubitemid 36342485)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.12 , pp. 6435-6438
    • Christner, B.C.1
  • 7
    • 55649119976 scopus 로고    scopus 로고
    • Spatial heterogeneity and temporal dynamics of particles, bacteria, and peps in arctic winter sea ice
    • Collins RE, Carpenter SD, Deming JW. (2008). Spatial heterogeneity and temporal dynamics of particles, bacteria, and pEPS in Arctic winter sea ice. J Mar Syst 74: 902-917.
    • (2008) J Mar Syst , vol.74 , pp. 902-917
    • Collins, R.E.1    Carpenter, S.D.2    Deming, J.W.3
  • 10
    • 25144508465 scopus 로고    scopus 로고
    • 13C-carrier DNA shortens the incubation time needed to detect benzoate-utilizing denitrifying bacteria by stable-isotope probing
    • DOI 10.1128/AEM.71.9.5192-5196.2005
    • Gallagher E, McGuinness L, Phelps C, Young LY, Kerkhof LJ. (2005). 13C-carrier DNA shortens the incubation time needed to detect benzoate-utilizing denitrifying bacteria by stable-isotope probing. Appl Environ Microbiol 71: 5192-5196. (Pubitemid 41338248)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.9 , pp. 5192-5196
    • Gallagher, E.1    McGuinness, L.2    Phelps, C.3    Young, L.Y.4    Kerkhof, L.J.5
  • 11
    • 1842591469 scopus 로고    scopus 로고
    • Supercooled water brines within permafrost - An unknown ecological niche for microorganisms: A model for astrobiology
    • Gilichinsky D, Rivkina E, Shcherbakova V, Laurinavichuis K, Tiedje J. (2003). Supercooled water brines within permafrost - An unknown ecological niche for microorganisms: a model for astrobiology. Astrobiology 3: 331-341.
    • (2003) Astrobiology , vol.3 , pp. 331-341
    • Gilichinsky, D.1    Rivkina, E.2    Shcherbakova, V.3    Laurinavichuis, K.4    Tiedje, J.5
  • 15
    • 84864110937 scopus 로고    scopus 로고
    • Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes
    • He R, Wooller MJ, Pohlman JW, Quensen J, Tiedje JM, Leigh MB. (2012). Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes. Appl Environ Microbiol 78: 4715-4723.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 4715-4723
    • He, R.1    Wooller, M.J.2    Pohlman, J.W.3    Quensen, J.4    Tiedje, J.M.5    Leigh, M.B.6
  • 17
    • 33749074755 scopus 로고    scopus 로고
    • Bacterial incorporation of leucine into protein down to -20 1c with evidence for potential activity in sub-eutectic saline ice formations
    • Junge K, Eicken H, Swanson BD, Deming JW. (2006). Bacterial incorporation of leucine into protein down to -20 1C with evidence for potential activity in sub-eutectic saline ice formations. Cryobiology 52: 417-429.
    • (2006) Cryobiology , vol.52 , pp. 417-429
    • Junge, K.1    Eicken, H.2    Swanson, B.D.3    Deming, J.W.4
  • 18
    • 0002079550 scopus 로고
    • Lichens in the antarctic region
    • Wiley-Liss: New York, NY, USA In: Friedmann EI (eds.)
    • Kappen L. (1993). Lichens in the Antarctic region. In: Friedmann EI (eds.) Antarctic Microbiology. Wiley-Liss: New York, NY, USA, pp 433-490.
    • (1993) Antarctic Microbiology , pp. 433-490
    • Kappen, L.1
  • 19
    • 79951634614 scopus 로고    scopus 로고
    • Phase preference by active, acetate-utilizing bacteria at the rifle, co integrated field research challenge site
    • Kerkhof LJ, Williams KH, Long PE. (2011). Phase preference by active, acetate-utilizing bacteria at the rifle, CO integrated field research challenge site. Environ Sci Technol 45: 1250-1256.
    • (2011) Environ Sci Technol , vol.45 , pp. 1250-1256
    • Kerkhof, L.J.1    Williams, K.H.2    Long, P.E.3
  • 20
    • 79952763587 scopus 로고    scopus 로고
    • Exopolymer alteration of physical properties of sea ice and implications for ice habitability and biogeochemistry in a warmer arctic
    • Krembs C, Eicken H, Deming JW. (2011). Exopolymer alteration of physical properties of sea ice and implications for ice habitability and biogeochemistry in a warmer Arctic. Proc Natl Acad Sci USA 108: 3653-3658.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 3653-3658
    • Krembs, C.1    Eicken, H.2    Deming, J.W.3
  • 21
    • 0346037119 scopus 로고    scopus 로고
    • High concentrations of exopolymeric substances in Arctic winter sea ice: Implications for the polar ocean carbon cycle and cryoprotection of diatoms
    • DOI 10.1016/S0967-0637(02)00122-X, PII S096706370200122X
    • Krembs C, Eicken H, Junge K, Deming JW. (2002). High concentrations of exopolymeric substances in Arctic winter sea ice: implications for the polar ocean carbon cycle and cryoprotection of diatoms. Deep-Sea Res Pt I 49: 2163-2181. (Pubitemid 36178194)
    • (2002) Deep-Sea Research Part I: Oceanographic Research Papers , vol.49 , Issue.12 , pp. 2163-2181
    • Krembs, C.1    Eicken, H.2    Junge, K.3    Deming, J.W.4
  • 22
    • 79955674907 scopus 로고    scopus 로고
    • Geomicrobiology and occluded o2-co2-ar gas analyses provide evidence of microbial respiration in ancient terrestrial ground ice
    • Lacelle D, Radtke K, Clark ID, Fisher D, Lauriol B, Utting N et al. (2011). Geomicrobiology and occluded O2-CO2-Ar gas analyses provide evidence of microbial respiration in ancient terrestrial ground ice. E&PSL 306: 46-54.
    • (2011) E And PSL , vol.306 , pp. 46-54
    • Lacelle, D.1    Radtke, K.2    Clark, I.D.3    Fisher, D.4    Lauriol, B.5    Utting, N.6
  • 23
    • 0014250488 scopus 로고
    • Growth of psychrophilic microorganisms at subzero temperatures
    • Larkin JM, Stokes JL. (1968). Growth of psychrophilic microorganisms at subzero temperatures. Can J Microbiol 14: 97-101.
    • (1968) Can J Microbiol , vol.14 , pp. 97-101
    • Larkin, J.M.1    Stokes, J.L.2
  • 24
    • 79957648116 scopus 로고    scopus 로고
    • Methane oxidation associated with submerged brown mosses reduces methane emissions from siberian polygonal tundra
    • Liebner S, Zeyer J, Wagner D, Schubert C, Pfeiffer E-M, Knoblauch C. (2011). Methane oxidation associated with submerged brown mosses reduces methane emissions from Siberian polygonal tundra. J Ecol 99: 914-922.
    • (2011) J Ecol , vol.99 , pp. 914-922
    • Liebner, S.1    Zeyer, J.2    Wagner, D.3    Schubert, C.4    Pfeiffer, E.-M.5    Knoblauch, C.6
  • 26
    • 77956094949 scopus 로고    scopus 로고
    • Stable isotope probing analysis of the diversity and activity of methanotrophic bacteria in soils from the canadian high arctic
    • Martineau C, Whyte LG, Greer CW. (2010). Stable isotope probing analysis of the diversity and activity of methanotrophic bacteria in soils from the Canadian High Arctic. Appl Environ Microbiol 76: 5773-5784.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 5773-5784
    • Martineau, C.1    Whyte, L.G.2    Greer, C.W.3
  • 28
    • 50249154165 scopus 로고    scopus 로고
    • Exopolymer particles: Microbial hotspots of enhanced bacterial activity in arctic fast ice (chukchi sea
    • Meiners K, Krembs C, Gradinger R. (2008). Exopolymer particles: microbial hotspots of enhanced bacterial activity in Arctic fast ice (Chukchi Sea). Aquat Microb Ecol 52: 195-207.
    • (2008) Aquat Microb Ecol , vol.52 , pp. 195-207
    • Meiners, K.1    Krembs, C.2    Gradinger, R.3
  • 29
    • 0037858183 scopus 로고
    • Minimum growth temperatures for food-poisoning, fecal-indicator, and psychrophilic microorganisms
    • Michener HD, Elliott RP. (1964). Minimum growth temperatures for food-poisoning, fecal-indicator, and psychrophilic microorganisms. Adv Food Res 13: 349-396.
    • (1964) Adv Food Res , vol.13 , pp. 349-396
    • Michener, H.D.1    Elliott, R.P.2
  • 30
    • 84878283457 scopus 로고    scopus 로고
    • Bacterial growth at -15 1c; molecular insights from the permafrost bacterium planococcus halocryophilus or1
    • Mykytczuk NCS, Foote SJ, Omelon CR, Southam G, Greer CW, Whyte LG. (2013). Bacterial growth at -15 1C; molecular insights from the permafrost bacterium Planococcus halocryophilus Or1. ISME J 7: 1211-1226.
    • (2013) ISME J , vol.7 , pp. 1211-1226
    • Mykytczuk, N.C.S.1    Foote, S.J.2    Omelon, C.R.3    Southam, G.4    Greer, C.W.5    Whyte, L.G.6
  • 31
    • 84864672263 scopus 로고    scopus 로고
    • Planococcus halocryophilus sp nov. An extreme sub-zero species from high arctic permafrost
    • Mykytczuk NCS, Wilhelm RC, Whyte LG. (2012). Planococcus halocryophilus sp nov., an extreme sub-zero species from high Arctic permafrost. Int J Syst Evol Microbiol 62: 1937-1944.
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 1937-1944
    • Mykytczuk, N.C.S.1    Wilhelm, R.C.2    Whyte, L.G.3
  • 32
    • 84872189417 scopus 로고    scopus 로고
    • Growth of carnobacterium spp from permafrost under low pressure, temperature, and anoxic atmosphere has implications for earth microbes on mars
    • Nicholson WL, Krivushin K, Gilichinsky D, Schuerger AC. (2013). Growth of Carnobacterium spp from permafrost under low pressure, temperature, and anoxic atmosphere has implications for Earth microbes on Mars. Proc Natl Acad Sci USA 110: 666-671.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 666-671
    • Nicholson, W.L.1    Krivushin, K.2    Gilichinsky, D.3    Schuerger, A.C.4
  • 34
    • 84860805427 scopus 로고    scopus 로고
    • Microbial activity in frozen soils
    • DOI: 10.1007/ 978-3-540-69371-69380, Springer-Verlag: Berlin Heidelberg, Vol Soil Biology In: Margesin R (eds)
    • Panikov NS. (2010). Microbial activity in frozen soils. In: Margesin R (eds) Permafrost Soils. DOI: 10.1007/ 978-3-540-69371-0, Springer-Verlag: Berlin Heidelberg, Vol Soil Biology 16: pp 119-148.
    • (2010) Permafrost Soils , vol.16 , pp. 119-148
    • Panikov, N.S.1
  • 36
    • 33846203704 scopus 로고    scopus 로고
    • Growth kinetics of microorganisms isolated from Alaskan soil and permafrost in solid media frozen down to -35°C
    • DOI 10.1111/j.1574-6941.2006.00210.x
    • Panikov NS, Sizova MV. (2007). Growth kinetics of microorganisms isolated from Alaskan soil and permafrost in solid media frozen down to -35 1C. FEMS Microbiol Ecol 59: 500-512. (Pubitemid 46105887)
    • (2007) FEMS Microbiology Ecology , vol.59 , Issue.2 , pp. 500-512
    • Panikov, N.S.1    Sizova, M.V.2
  • 37
    • 19544386324 scopus 로고    scopus 로고
    • Characterization of potential stress responses in ancient Siberian permafrost psychroactive bacteria
    • DOI 10.1016/j.femsec.2004.12.003, PII S0168649604003617, Microbial Life in Cold Ecosystems
    • Ponder MA, Gilmour SJ, Bergholz PW, Mindock CA, Hollingsworth R, Thomashow MF et al. (2005). Characterization of potential stress responses in ancient Siberian permafrost psychroactive bacteria. FEMS Microbiol Ecol 53: 103-115. (Pubitemid 40733513)
    • (2005) FEMS Microbiology Ecology , vol.53 , Issue.1 , pp. 103-115
    • Ponder, M.A.1    Gilmour, S.J.2    Bergholz, P.W.3    Mindock, C.A.4    Hollingsworth, R.5    Thomashow, M.F.6    Tiedje, J.M.7
  • 38
    • 0034628432 scopus 로고    scopus 로고
    • Stable-isotope probing as a tool in microbial ecology
    • DOI 10.1038/35001054
    • Radajewski S, Ineson P, Parekh NR, Murrell JC. (2000). Stable-isotope probing as a tool in microbial ecology. Nature 403: 646-649. (Pubitemid 30104002)
    • (2000) Nature , vol.403 , Issue.6770 , pp. 646-649
    • Radajewski, S.1    Ineson, P.2    Parekh, N.R.3    Murrell, J.C.4
  • 40
    • 0031736055 scopus 로고    scopus 로고
    • Assessment of changes in microbial community structure during operation of an ammonia biofilter with molecular tools
    • Sakano Y, Kerkhof L. (1998). Assessment of changes in microbial community structure during operation of an ammonia biofilter with molecular tools. Appl Environ Microbiol 64: 4877-4882. (Pubitemid 28557854)
    • (1998) Applied and Environmental Microbiology , vol.64 , Issue.12 , pp. 4877-4882
    • Sakano, Y.1    Kerkhof, L.2
  • 42
    • 78650291361 scopus 로고    scopus 로고
    • A model-data intercomparison of co2 exchange across north america results from the north american carbon program site synthesis
    • doi:10.1029/2009JG001229
    • Schwalm CR, Williams CA, Schaefer K, Anderson R, Arain MA, Baker I et al. (2010). A model-data intercomparison of CO2 exchange across North America: results from the North American Carbon Program site synthesis. J Geophys Res Biogeosci; 115: doi:10.1029/2009JG001229.
    • (2010) J Geophys Res Biogeosci , pp. 115
    • Schwalm, C.R.1    Williams, C.A.2    Schaefer, K.3    Anderson, R.4    Arain, M.A.5    Baker, I.6
  • 43
    • 0030613422 scopus 로고    scopus 로고
    • Characterization of viable bacteria from siberian permafrost by 16s rdna sequencing
    • Shi T, Reeves RH, Gilichinsky DA, Friedmann EI. (1997). Characterization of viable bacteria from Siberian permafrost by 16S rDNA sequencing. Microb Ecol 33: 169-179.
    • (1997) Microb Ecol , vol.33 , pp. 169-179
    • Shi, T.1    Reeves, R.H.2    Gilichinsky, D.A.3    Friedmann, E.I.4
  • 44
    • 33846222278 scopus 로고    scopus 로고
    • Characterization of the microbial diversity in a permafrost sample from the Canadian high Arctic using culture-dependent and culture-independent methods
    • DOI 10.1111/j.1574-6941.2006.00247.x
    • Steven B, Briggs G, McKay CP, Pollard WH, Greer CW, Whyte LG. (2007). Characterization of the microbial diversity in a permafrost sample from the Canadian high Arctic using culture-dependent and cultureindependent methods. FEMS Microbiol Ecol 59: 513-523. (Pubitemid 46105888)
    • (2007) FEMS Microbiology Ecology , vol.59 , Issue.2 , pp. 513-523
    • Steven, B.1    Briggs, G.2    McKay, C.P.3    Pollard, W.H.4    Greer, C.W.5    Whyte, L.G.6
  • 45
    • 70349556766 scopus 로고    scopus 로고
    • Soil organic carbon pools in the northern circumpolar permafrost region
    • doi:10.1029/2008GB003327
    • Tarnocai C, Canadell JG, Schuur EAG, Kuhry P, Mazhitova G, Zimov S. (2009). Soil organic carbon pools in the northern circumpolar permafrost region. GBioC; 23: doi:10.1029/2008GB003327.
    • (2009) GBioC , vol.23
    • Tarnocai, C.1    Canadell, J.G.2    Schuur, E.A.G.3    Kuhry, P.4    Mazhitova, G.5    Zimov, S.6
  • 46
    • 84891144607 scopus 로고    scopus 로고
    • Terrestrial permafrost as a model environment for bioastronomy
    • In: Norris RP, Stootman FH (eds)
    • Tsapin AI, McDonald GD. (2004). Terrestrial permafrost as a model environment for bioastronomy. Bioastronomy 2002: life among the stars. In: Norris RP, Stootman FH (eds) Vol. 213.
    • (2004) Bioastronomy 2002: Life among the stars , vol.213
    • Tsapin, A.I.1    McDonald, G.D.2
  • 47
    • 84872920243 scopus 로고    scopus 로고
    • Organic carbon transformations in high-arctic peat soils: Key functions and microorganisms
    • Tveit A, Schwacke R, Svenning MM, Urich T. (2013). Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms. ISME J 7: 299-311.
    • (2013) ISME J , vol.7 , pp. 299-311
    • Tveit, A.1    Schwacke, R.2    Svenning, M.M.3    Urich, T.4
  • 48
    • 67349173563 scopus 로고    scopus 로고
    • The exiguobacterium genus: Biodiversity and biogeography
    • Vishnivetskaya TA, Kathariou S, Tiedje JM. (2009). The exiguobacterium genus: biodiversity and biogeography. Extremophiles 13: 541-555.
    • (2009) Extremophiles , vol.13 , pp. 541-555
    • Vishnivetskaya, T.A.1    Kathariou, S.2    Tiedje, J.M.3
  • 49
    • 77955253753 scopus 로고    scopus 로고
    • Molecular investigations into a globally important carbon pool: Permafrost-protected carbon in alaskan soils
    • WaldropMP,Wickland KP,White R, Berhe AA, Harden JW, Romanovsky VE. (2010). Molecular investigations into a globally important carbon pool: permafrost-protected carbon in Alaskan soils. Global Change Biol 16: 2543-2554.
    • (2010) Global Change Biol , vol.16 , pp. 2543-2554
    • Waldrop, M.P.1    Wickland, K.P.2    White, R.3    Berhe, A.A.4    Harden, J.W.5    Romanovsky, V.E.6


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