Chryseobacterium xinjiangense sp. nov., isolated from alpine permafrost

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 6, 2011, Pages 1397-1401

  Zhao, Qi ^a   Bai, Yu ^a   Zhang, Gaosen ^b   Zhu, Shan ^a   Sheng, Hongmei ^a   Sun, Yaxuan ^b   An, Lizhe ^a,b  

^a LANZHOU UNIVERSITY   (China)

^b Chinese Academy of Sciences ^*  (China)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; FUNGAL DNA; RNA 16S;

ALPINE PERMAFROST; ARTICLE; BACTERIAL GROWTH; BACTERIUM CULTURE; BACTERIUM ISOLATION; CHINA; CHRYSEOBACTERIUM; CHRYSEOBACTERIUM AQUATICUM; CHRYSEOBACTERIUM SOLDANELLICOLA; CHRYSEOBACTERIUM XINJIANGENSE; DNA BASE COMPOSITION; GENE SEQUENCE; GENETIC VARIABILITY; GRAM NEGATIVE BACTERIUM; GRAM STAINING; NONHUMAN; NUCLEOTIDE SEQUENCE; PERMAFROST; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; UNINDEXED SEQUENCE;

AEROBIOSIS; BASE COMPOSITION; CHINA; CHRYSEOBACTERIUM; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SOIL MICROBIOLOGY; TEMPERATURE;

CHRYSEOBACTERIUM; CHRYSEOBACTERIUM SOLDANELLICOLA;

EID: 79958218023     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.024141-0     Document Type: Article

References (27)

1. Bai, Y., Yang, D., Wang, J., Xu, S., Wang, X. & An, L. (2006). Phylogenetic diversity of culturable bacteria from alpine permafrost in the Tianshan Mountains, northwestern China. Res Microbiol 157, 741-751.
2. Barrow, G. I. & Feltham, R. K. A. (editors) (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
3. Bernardet, J. F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
4. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
5. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
6. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
7. Hantsis-Zacharov, E. & Halpern, M. (2007). Chryseobacterium haifense sp. nov., a psychrotolerant bacterium isolated from raw milk. Int J Syst Evol Microbiol 57, 2344-2348.
8. Hantsis-Zacharov, E., Senderovich, Y. & Halpern, M. (2008). Chryseobacterium bovis sp. nov., isolated from raw cow's milk. Int J Syst Evol Microbiol 58, 1024-1028.
9. Ilardi, P., Fernández, J. & Avendaño-Herrera, R. (2009). Chryseobacterium piscicola sp. nov., isolated from diseased salmonid fish. Int J Syst Evol Microbiol 59, 3001-3005.
10. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
11. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
12. Kämpfer, P., Lodders, N., Vaneechoutte, M. & Wauters, G. (2009a). Transfer of Sejongia antarctica, Sejongia jeonii and Sejongia marina to the genus Chryseobacterium as Chryseobacterium antarcticum comb. nov., Chryseobacterium jeonii comb. nov. and Chryseobacterium marinum comb. nov. Int J Syst Evol Microbiol 59, 2238-2240.
13. Kämpfer, P., Vaneechoutte, M., Lodders, N., De Baere, T., Avesani, V., Janssens, M., Busse, H.-J. & Wauters, G. (2009b). Description of Chryseobacterium anthropi sp. nov. to accommodate clinical isolates biochemically similar to Kaistella koreensis and Chryseobacterium haifense, proposal to reclassify Kaistella koreensis as Chryseobacterium koreense comb. nov. and emended description of the genus Chryseobacterium. Int J Syst Evol Microbiol 59, 2421-2428.
14. Keswani, J. & Whitman, W. B. (2001). Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes. Int J Syst Evol Microbiol 51, 667-678.
15. Kim, K. K., Kim, M. K., Lim, J. H., Park, H. Y. & Lee, S.-T. (2005). Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov. Int J Syst Evol Microbiol 55, 1287-1293.
16. Kim, K. K., Lee, K. C., Oh, H.-M. & Lee, J.-S. (2008). Chryseobacterium aquaticum sp. nov., isolated from a water reservoir. Int J Syst Evol Microbiol 58, 533-537.
17. Li, Y., Kawamura, Y., Fujiwara, N., Naka, T., Liu, H., Huang, X., Kobayashi, K. & Ezaki, T. (2003). Chryseobacterium miricola sp. nov., a novel species isolated from condensation water of space station Mir. Syst Appl Microbiol 26, 523-528.
18. Park, M. S., Jung, S. R., Lee, K. H., Lee, M. S., Do, J. O., Kim, S. B. & Bae, K. S. (2006). Chryseobacterium soldanellicola sp. nov. and Chryseobacterium taeanense sp. nov., isolated from roots of sand-dune plants. Int J Syst Evol Microbiol 56, 433-438.
19. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
20. Shimomura, K., Kaji, S. & Hiraishi, A. (2005). Chryseobacterium shigense sp. nov., a yellow-pigmented, aerobic bacterium isolated from a lactic acid beverage. Int J Syst Evol Microbiol 55, 1903-1906.
21. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
22. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
23. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
24. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
25. Vandamme, P., Bernardet, J.-F., Segers, P., Kersters, K. & Holmes, B. (1994). New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int J Syst Bacteriol 44, 827-831.
26. Vaneechoutte, M., Kämpfer, P., De Baere, T., Avesani, V., Janssens, M. & Wauters, G. (2007). Chryseobacterium hominis sp. nov., to accommodate clinical isolates biochemically similar to CDC groups II-h and II-c. Int J Syst Evol Microbiol 57, 2623-2628.
27. Weon, H.-Y., Kim, B.-Y., Yoo, S.-H., Kwon, S.-W., Stackebrandt, E. & Go, S.-J. (2008). Chryseobacterium soli sp. nov. and Chryseobacterium jejuense sp. nov., isolated from soil samples from Jeju, Korea. Int J Syst Evol Microbiol 58, 470-473.