Methanobacterium arcticum sp. nov., a methanogenic archaeon from Holocene Arctic permafrost

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 1, 2011, Pages 144-147

  Shcherbakova, Viktoria ^a   Rivkina, Elizaveta ^b   Pecheritsyna, Svetlana ^a   Laurinavichius, Kestus ^a   Suzina, Nataliya ^a   Gilichinsky, David ^b  

^a SKRYABIN INSTITUTE OF BIOCHEMISTRY AND PHYSIOLOGY OF MICROORGANISMS   (Russian Federation)

^b INSTITUTE OF PHYSICOCHEMICAL AND BIOLOGICAL PROBLEMS IN SOIL SCIENCE   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; FORMIC ACID; RNA 16S;

ARCTIC; ARTICLE; BACTERIAL STRAIN; GENE SEQUENCE; HOLOCENE; METHANOBACTERIUM; METHANOBACTERIUM ARCTICUM; METHANOBACTERIUM BRYANTII; METHANOBACTERIUM VETERUM; METHANOGENIC ARCHAEON; NONHUMAN; NUCLEOTIDE SEQUENCE; PERMAFROST; PRIORITY JOURNAL;

BASE COMPOSITION; CARBON DIOXIDE; CLUSTER ANALYSIS; DNA, ARCHAEAL; DNA, RIBOSOMAL; HYDROGEN; HYDROGEN-ION CONCENTRATION; METHANOBACTERIUM; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SOIL MICROBIOLOGY; TEMPERATURE;

ARCHAEA; METHANOBACTERIUM; METHANOBACTERIUM BRYANTII;

EID: 78651459724     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.021311-0     Document Type: Article

References (24)

1. Balch, W. E., Fox, G. E., Magrum, L. J. & Wolfe, R. S. (1979). Methanogens: re-evalution of a unique biological group. Microbiol Rev 43, 260-296.
2. Bonin, A. S. & Boone, D. R. (2006). The order Methanobacteriales. In The Prokaryotes, 3rd edn, vol. 3, pp. 231-243. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
3. Boone, D. R. & Whitman, W. B. (1988). Proposal of minimal standards for describing new taxa of methanogenic bacteria. Int J Syst Bacteriol 38, 212-219.
4. De Ley, J., Catloir, H. & Reynarts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
5. El'-Registan, G. I., Muliukin, A. L., Nikolaev, I. A., Suzina, N. E., Gal'chenko, V. F. & Duda, V. I. (2006). Adaptive functions of extracellular autoregulators of microorganisms. Mikrobiologiia 75, 446-456 (in Russian).
6. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
7. Konig, H. (1995). Isolation and analysis of cell walls from methanogenic Archaea. In Archaea: a Laboratory Manual, vol. 2, pp. 315-328. Edited by K. R. Sowers & H. T. Schreier. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
8. Kotelnikova, S., Macario, A. J. L. & Pedersen, K. (1998). Methanobacterium subterraneum sp. nov., a new alkaliphilic, eurythemic and halotolerant methanogen isolated from deep granitic groundwater. Int J Syst Bacteriol 48, 357-367.
9. Krivushin, K. V., Shcherbakova, V. A., Petrovskaya, L. E. & Rivkina, E. M. (2010). Methanobacterium veterum sp. nov., from ancient Siberian permafrost. Int J Syst Evol Microbiol 60, 455-459.
10. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
11. Morita, R. Y. (1975). Psychrophilic bacteria. Bacteriol Rev 39, 144-167.
12. Powell, G. E. (1983). Interpreting gas kinetics of batch culture. Biotechnol Lett 5, 437-440.
13. Rivkina, E., Shcherbakova, V., Laurinavichuis, K., Petrovskaya, L., Krivushin, K., Kraev, G., Pecheritsina, S. & Gilichinsky, D. (2007). Biogeochemistry of methane and methanogenic archaea in permafrost. FEMS Microbiol Ecol 61, 1-15.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
16. Shcherbakova, V. A., Chyvilskya, N. A., Rivkina, E. M., Pecheritsyna, S. A., Laurinavichius, K. S., Suzina, N. E., Osipov, G. A., Lysenko, A. M., Gilichinsky, D. A. & Akimenko, V. K. (2005). Novel psychrophilic anaerobic spore-forming bacterium from the overcooled water brine in permafrost: description Clostridium algoriphilum sp. nov. Extremophiles 9, 239-246.
17. Shi, T., Reeves, R. H., Gilichinsky, D. A. & Friedmann, E. I. (1997). Characterization of viable bacteria from Siberian permafrost by 16S rDNA sequencing. Microb Ecol 33, 169-179. (Pubitemid 27191285)
18. Shlimon, A. G., Friedrich, M. W., Niemann, H., Ramsing, N. B. & Finster, K. (2004). Methanobacterium aarhusense sp. nov., a novel methanogen isolated from a marine sediment (Aarhus Bay, Denmark). Int J Syst Evol Microbiol 54, 759-763. (Pubitemid 38771777)
19. Smibert, R. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-652. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
20. Sowers, K. R. & Noll, K. M. (1995). Techniques for anaerobic growth. In Archaea: a Laboratory Manual, vol. 2, pp. 15-48. Edited by K. R. Sowers & H. T. Schreier. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
21. Suzina, N. E., Mulyukin, A. L., Dmitriev, V. V., Nikolaev, Y. A., Shorokhova, A.P., Bobkova, Y. S., Barinova, E. S., Plakunov, V. K., El-Registan, G. I. & Duda, V. I. (2006). The structural bases of long-term anabiosis in non-spore-forming bacteria. Adv Space Res 38, 1209-1219.
22. Tamura, K., Nei, M. & Kumar, S. (2004). Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A 101, 11030-11035. (Pubitemid 38989579)
23. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599. (Pubitemid 47236692)
24. Whitman, W. B., Bowen, T. L. & Boone, D. R. (2006). The methanogenic bacteria. In The Prokaryotes, 3rd edn, vol. 3, pp. 165-207. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.