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Volumn 9, Issue 5, 2014, Pages

Identification and validation of reference genes for quantitative real-time PCR normalization and its applications in Lycium

Author keywords

[No Author keywords available]

Indexed keywords

ANTHOCYANIN; ELONGATION FACTOR 1ALPHA; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; INORGANIC SALT;

EID: 84901061178     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0097039     Document Type: Article
Times cited : (46)

References (41)
  • 1
    • 78751574251 scopus 로고    scopus 로고
    • Anthocyanins composition and antioxidant activity of wild Lycium ruthenicum Murr. From Qinghai-Tibet Plateau
    • Zheng J, Ding C, Wang L, Li G, Shi J, et al. (2011) Anthocyanins composition and antioxidant activity of wild Lycium ruthenicum Murr. from Qinghai-Tibet Plateau. Food Chem 126: 859-865.
    • (2011) Food Chem , vol.126 , pp. 859-865
    • Zheng, J.1    Ding, C.2    Wang, L.3    Li, G.4    Shi, J.5
  • 2
    • 74349093922 scopus 로고    scopus 로고
    • Goji (Lycium barbarum and L. Chinense): Phytochemistry, pharmacology and safety in the perspective of traditional uses and recent popularity
    • Potterat O (2010) Goji (Lycium barbarum and L. chinense): phytochemistry, pharmacology and safety in the perspective of traditional uses and recent popularity. Planta Med 76: 7-19.
    • (2010) Planta Med , vol.76 , pp. 7-19
    • Potterat, O.1
  • 3
    • 0033214408 scopus 로고    scopus 로고
    • Flavonoids and isoflavonoids: A gold mine for metabolic engineering
    • Dixon RA, Steele CL (1999) Flavonoids and isoflavonoids: a gold mine for metabolic engineering. Trends Plant Sci 4: 394-400.
    • (1999) Trends Plant Sci , vol.4 , pp. 394-400
    • Dixon, R.A.1    Steele, C.L.2
  • 4
    • 41849089754 scopus 로고    scopus 로고
    • Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings
    • DOI 10.1111/j.1365-313X.2007.03373.x
    • Gonzalez A, Zhao M, Leavitt JM, Lloyd AM (2008) Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings. Plant J 53: 814-827. (Pubitemid 351495869)
    • (2008) Plant Journal , vol.53 , Issue.5 , pp. 814-827
    • Gonzalez, A.1    Zhao, M.2    Leavitt, J.M.3    Lloyd, A.M.4
  • 5
    • 84895928244 scopus 로고    scopus 로고
    • Comparative analysis of anthocyanin biosynthesis during fruit development in two Lycium species
    • Zeng S, Wu M, Zou C, Liu X, Shen X, et al. (2014) Comparative analysis of anthocyanin biosynthesis during fruit development in two Lycium species. Physiol Plantarum: 150: 505-516.
    • (2014) Physiol Plantarum , vol.150 , pp. 505-516
    • Zeng, S.1    Wu, M.2    Zou, C.3    Liu, X.4    Shen, X.5
  • 6
    • 33847658374 scopus 로고    scopus 로고
    • Identification of early salt stress response genes in tomato root by suppression subtractive hybridization and microarray analysis
    • DOI 10.1093/jxb/erl258
    • Ouyang B, Yang T, Li H, Zhang L, Zhang Y, et al. (2007) Identification of early salt stress response genes in tomato root by suppression subtractive hybridization and microarray analysis. J Exp Bot 58: 507-520. (Pubitemid 46363195)
    • (2007) Journal of Experimental Botany , vol.58 , Issue.3 , pp. 507-520
    • Ouyang, B.1    Yang, T.2    Li, H.3    Zhang, L.4    Zhang, Y.5    Zhang, J.6    Fei, Z.7    Ye, Z.8
  • 7
    • 0000061485 scopus 로고
    • Transcriptional analysis of polygalacturonase and other ripening associated genes in Rutgers, rin, nor, and Nr tomato fruit
    • DellaPenna D, Lincoln JE, Fischer RL, Bennett AB (1989) Transcriptional analysis of polygalacturonase and other ripening associated genes in Rutgers, rin, nor, and Nr tomato fruit. Plant Physiol 90: 1372-1377.
    • (1989) Plant Physiol , vol.90 , pp. 1372-1377
    • DellaPenna, D.1    Lincoln, J.E.2    Fischer, R.L.3    Bennett, A.B.4
  • 8
    • 0000791894 scopus 로고
    • The tomato polygalacturonase gene and ripening-specific expression in transgenic plants
    • Bird CR, Smith CJS, Ray JA, Moureau P, Bevan MW, et al. (1988) The tomato polygalacturonase gene and ripening-specific expression in transgenic plants. Plant Mol Biol 11: 651-662.
    • (1988) Plant Mol Biol , vol.11 , pp. 651-662
    • Bird, C.R.1    Smith, C.J.S.2    Ray, J.A.3    Moureau, P.4    Bevan, M.W.5
  • 9
    • 0029310619 scopus 로고
    • High levels of ripening-specific reporter gene expression directed by tomato fruit polygalacturonase gene-flanking regions
    • Nicholass F, Smith CS, Schuch W, Bird C, Grierson D (1995) High levels of ripening-specific reporter gene expression directed by tomato fruit polygalacturonase gene-flanking regions. Plant Mol Biol 28: 423-435.
    • (1995) Plant Mol Biol , vol.28 , pp. 423-435
    • Nicholass, F.1    Smith, C.S.2    Schuch, W.3    Bird, C.4    Grierson, D.5
  • 10
    • 0027668985 scopus 로고
    • Positive and negative regulatory regions control the spatial distribution of polygalacturonase transcription in tomato fruit pericarp
    • Montgomery J, Pollard V, Deikman J, Fischer RL (1993) Positive and negative regulatory regions control the spatial distribution of polygalacturonase transcription in tomato fruit pericarp. Plant Cell 5: 1049-1062.
    • (1993) Plant Cell , vol.5 , pp. 1049-1062
    • Montgomery, J.1    Pollard, V.2    Deikman, J.3    Fischer, R.L.4
  • 11
    • 70349989986 scopus 로고    scopus 로고
    • Analysis of flavonoids from leaves of cultivated Lycium barbarum L
    • Dong J, Lu D, Wang Y (2009) Analysis of flavonoids from leaves of cultivated Lycium barbarum L. Plant Food Hum Nutr 64: 199-204.
    • (2009) Plant Food Hum Nutr , vol.64 , pp. 199-204
    • Dong, J.1    Lu, D.2    Wang, Y.3
  • 12
    • 79551517589 scopus 로고    scopus 로고
    • Lycium barbarum polysaccharides reduce neuronal damage, blood-retinal barrier disruption and oxidative stress in retinal ischemia/reperfusion injury
    • Li S, Yang D, Yeung C, Yu W-Y, Chang RC, et al. (2011) Lycium barbarum polysaccharides reduce neuronal damage, blood-retinal barrier disruption and oxidative stress in retinal ischemia/reperfusion injury. PLoS ONE 6: e16380.
    • (2011) PLoS ONE , vol.6
    • Li, S.1    Yang, D.2    Yeung, C.3    Yu, W.-Y.4    Chang, R.C.5
  • 13
    • 33751424132 scopus 로고    scopus 로고
    • Neuroprotective effects of Lycium barbarum Lynn on protecting retinal ganglion cells in an ocular hypertension model of glaucoma
    • DOI 10.1016/j.expneurol.2006.05.031, PII S0014488606003608
    • Chan HC, Chang RCC, Ip AKC, Chiu K, Yuen WH, et al. (2007) Neuroprotective effects of Lycium barbarum Lynn on protecting retinal ganglion cells in an ocular hypertension model of glaucoma. Exp Neurol 203: 269-273. (Pubitemid 44821159)
    • (2007) Experimental Neurology , vol.203 , Issue.1 , pp. 269-273
    • Chan, H.-C.1    Chuen-Chung, C.R.2    Koon-Ching, I.A.3    Chiu, K.4    Yuen, W.-H.5    Zee, S.-Y.6    So, K.-F.7
  • 14
    • 85027928183 scopus 로고    scopus 로고
    • Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions
    • Chen L, Zhong HY, Kuang JF, Li JG, Lu WJ, et al. (2011) Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions. Planta 234: 377-390.
    • (2011) Planta , vol.234 , pp. 377-390
    • Chen, L.1    Zhong, H.Y.2    Kuang, J.F.3    Li, J.G.4    Lu, W.J.5
  • 15
    • 77950946491 scopus 로고    scopus 로고
    • Selection of reference genes for quantitative gene expression normalization in flax (Linum usitatissimum L.)
    • Huis R, Hawkins S, Neutelings G (2010) Selection of reference genes for quantitative gene expression normalization in flax (Linum usitatissimum L.). BMC Plant Biol 10.
    • (2010) BMC Plant Biol , pp. 10
    • Huis, R.1    Hawkins, S.2    Neutelings, G.3
  • 16
    • 57049155443 scopus 로고    scopus 로고
    • Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR
    • Hong SY, Seo PJ, Yang MS, Xiang F, Park CM (2008) Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR. BMC Plant Biol 8: 112.
    • (2008) BMC Plant Biol , vol.8 , pp. 112
    • Hong, S.Y.1    Seo, P.J.2    Yang, M.S.3    Xiang, F.4    Park, C.M.5
  • 17
    • 27144456802 scopus 로고    scopus 로고
    • Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress
    • DOI 10.1093/jxb/eri285
    • Nicot N, Hausman J, Hoffmann L, Evers D (2005) Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J Exp Bot 56: 2907-2914. (Pubitemid 41507227)
    • (2005) Journal of Experimental Botany , vol.56 , Issue.421 , pp. 2907-2914
    • Nicot, N.1    Hausman, J.-F.2    Hoffmann, L.3    Evers, D.4
  • 18
    • 84879758588 scopus 로고    scopus 로고
    • Validation of reference genes for quantitative real-time PCR during Chinese wolfberry fruit development
    • Wang L, Wang Y, Zhou P (2013) Validation of reference genes for quantitative real-time PCR during Chinese wolfberry fruit development. Plant Physiol Biochem 70: 304-310.
    • (2013) Plant Physiol Biochem , vol.70 , pp. 304-310
    • Wang, L.1    Wang, Y.2    Zhou, P.3
  • 19
    • 79952698987 scopus 로고    scopus 로고
    • Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions
    • Zhong H, Chen J, Li C, Chen L, Wu J, et al. (2011) Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions. Plant Cell Rep 30: 641-653.
    • (2011) Plant Cell Rep , vol.30 , pp. 641-653
    • Zhong, H.1    Chen, J.2    Li, C.3    Chen, L.4    Wu, J.5
  • 20
    • 84856016873 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR in Chrysanthemum subjected to biotic and abiotic stress
    • Gu C, Chen S, Liu Z, Shan H, Luo H, et al. (2011) Reference gene selection for quantitative real-time PCR in Chrysanthemum subjected to biotic and abiotic stress. Mol Biotechnol 49: 192-197.
    • (2011) Mol Biotechnol , vol.49 , pp. 192-197
    • Gu, C.1    Chen, S.2    Liu, Z.3    Shan, H.4    Luo, H.5
  • 21
    • 61849089336 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress
    • Lovdal T, Lillo C (2009) Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress. Anal Biochem 387: 238-242.
    • (2009) Anal Biochem , vol.387 , pp. 238-242
    • Lovdal, T.1    Lillo, C.2
  • 22
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • research0034.0031-0034.0011
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: research0034.0031-0034.0011.
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5
  • 23
    • 0037109753 scopus 로고    scopus 로고
    • Quantitative real-time reverse transcription polymerase chain reaction: Normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies
    • DOI 10.1016/S0003-2697(02)00311-1, PII S0003269702003111
    • Tricarico C, Pinzani P, Bianchi S, Paglierani M, Distante V, et al. (2002) Quantitative real-time reverse transcription polymerase chain reaction: normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies. Anal Biochem 309: 293-300. (Pubitemid 35387321)
    • (2002) Analytical Biochemistry , vol.309 , Issue.2 , pp. 293-300
    • Tricarico, C.1    Pinzani, P.2    Bianchi, S.3    Paglierani, M.4    Distante, V.5    Pazzagli, M.6    Bustin, S.A.7    Orlando, C.8
  • 24
    • 0033836029 scopus 로고    scopus 로고
    • Control selection for RNA quantitation
    • Suzuki T, Higgins PJ, Crawford DR (2000) Control selection for RNA quantitation. Biotechniques 29: 332-337. (Pubitemid 30658285)
    • (2000) BioTechniques , vol.29 , Issue.2 , pp. 332-337
    • Suzuki, T.1    Higgins, P.J.2    Crawford, D.R.3
  • 26
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • DOI 10.1158/0008-5472.CAN-04-0496
    • Andersen CL, Jensen JL, Ørntoft TF (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64: 5245-5250. (Pubitemid 39006544)
    • (2004) Cancer Research , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 27
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in arabidopsis
    • DOI 10.1104/pp.105.063743
    • Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 139: 5-17. (Pubitemid 43951587)
    • (2005) Plant Physiology , vol.139 , Issue.1 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.-R.5
  • 28
    • 77950388585 scopus 로고    scopus 로고
    • Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets
    • Narsai R, Ivanova A, Ng S, Whelan J (2010) Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets. BMC Plant Biol 10.
    • (2010) BMC Plant Biol , pp. 10
    • Narsai, R.1    Ivanova, A.2    Ng, S.3    Whelan, J.4
  • 29
    • 84859701141 scopus 로고    scopus 로고
    • Validation of reference genes for RT-qPCR normalization in common bean during biotic and abiotic stresses
    • Borges A, Tsai SM, Caldas DGG (2012) Validation of reference genes for RT-qPCR normalization in common bean during biotic and abiotic stresses. Plant Cell Rep 31: 827-838.
    • (2012) Plant Cell Rep , vol.31 , pp. 827-838
    • Borges, A.1    Tsai, S.M.2    Caldas, D.G.G.3
  • 30
    • 0037134017 scopus 로고    scopus 로고
    • A technique whose time has come
    • Walker NJ (2002) A technique whose time has come. Science 296: 557-559.
    • (2002) Science , vol.296 , pp. 557-559
    • Walker, N.J.1
  • 31
    • 0003054701 scopus 로고
    • Synthesis of polygalacturonase during tomato fruit ripening
    • Tucker G, Grierson D (1982) Synthesis of polygalacturonase during tomato fruit ripening. Planta 155: 64-67.
    • (1982) Planta , vol.155 , pp. 64-67
    • Tucker, G.1    Grierson, D.2
  • 32
    • 79959255889 scopus 로고    scopus 로고
    • Phytochemical and biological studies of Lycium medicinal plants
    • Yao X, Peng Y, Xu L, Li L, Wu Q, et al. (2011) Phytochemical and biological studies of Lycium medicinal plants. Chem Biodivers 8: 976-1010.
    • (2011) Chem Biodivers , vol.8 , pp. 976-1010
    • Yao, X.1    Peng, Y.2    Xu, L.3    Li, L.4    Wu, Q.5
  • 33
    • 79959928993 scopus 로고    scopus 로고
    • A review of botanical characteristics, phytochemistry, clinical relevance in efficacy and safety of Lycium barbarum fruit (Goji)
    • Amagase H, Farnsworth NR (2011) A review of botanical characteristics, phytochemistry, clinical relevance in efficacy and safety of Lycium barbarum fruit (Goji). Food Res Int 44: 1702-1717.
    • (2011) Food Res Int , vol.44 , pp. 1702-1717
    • Amagase, H.1    Farnsworth, N.R.2
  • 34
    • 84878213256 scopus 로고    scopus 로고
    • Selection and validation of suitable reference genes for mRNA qRT-PCR analysis using somatic embryogenic cultures, floral and vegetative tissues in Citrus
    • Liu Z, Ge X, Wu X, Kou S, Chai L, et al. (2013) Selection and validation of suitable reference genes for mRNA qRT-PCR analysis using somatic embryogenic cultures, floral and vegetative tissues in Citrus. Plant Cell Tiss Org 113: 469-481.
    • (2013) Plant Cell Tiss Org , vol.113 , pp. 469-481
    • Liu, Z.1    Ge, X.2    Wu, X.3    Kou, S.4    Chai, L.5
  • 35
    • 33751234803 scopus 로고    scopus 로고
    • An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
    • Reid K, Olsson N, Schlosser J, Peng F, Lund S (2006) An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol 6: 27.
    • (2006) BMC Plant Biol , vol.6 , pp. 27
    • Reid, K.1    Olsson, N.2    Schlosser, J.3    Peng, F.4    Lund, S.5
  • 36
    • 33646854724 scopus 로고    scopus 로고
    • Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR
    • DOI 10.1016/j.bbrc.2006.04.140, PII S0006291X06009685
    • Jain M, Nijhawan A, Tyagi AK, Khurana JP (2006) Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochem Bioph Res Co 345: 646-651. (Pubitemid 43776982)
    • (2006) Biochemical and Biophysical Research Communications , vol.345 , Issue.2 , pp. 646-651
    • Jain, M.1    Nijhawan, A.2    Tyagi, A.K.3    Khurana, J.P.4
  • 37
    • 58749110475 scopus 로고    scopus 로고
    • Evaluation of reference genes for quantitative RT-PCR in Lolium temulentum under abiotic stress
    • Dombrowski JE, Martin RC (2009) Evaluation of reference genes for quantitative RT-PCR in Lolium temulentum under abiotic stress. Plant Sci 176: 390-396.
    • (2009) Plant Sci , vol.176 , pp. 390-396
    • Dombrowski, J.E.1    Martin, R.C.2
  • 38
    • 77954588784 scopus 로고    scopus 로고
    • Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data
    • Artico S, Nardeli S, Brilhante O, GrossideSa M, Alves-Ferreira M (2010) Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data. BMC Plant Biol 10: 49.
    • (2010) BMC Plant Biol , vol.10 , pp. 49
    • Artico, S.1    Nardeli, S.2    Brilhante, O.3    GrossideSa, M.4    Alves-Ferreira, M.5
  • 39
    • 70449337110 scopus 로고    scopus 로고
    • Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR
    • Hu RB, Fan CM, Li HY, Zhang QZ, Fu YF (2009) Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR. BMC Mol Biol 10.
    • (2009) BMC Mol Biol , pp. 10
    • Hu, R.B.1    Fan, C.M.2    Li, H.Y.3    Zhang, Q.Z.4    Fu, Y.F.5
  • 40
    • 0001388832 scopus 로고
    • Organization of ripening and ethylene regulatory regions in a fruit-specific promoter from tomato (Lycopersicon esculentum)
    • Deikman J, Kline R, Fischer RL (1992) Organization of ripening and ethylene regulatory regions in a fruit-specific promoter from tomato (Lycopersicon esculentum). Plant Physiol 100: 2013-2017.
    • (1992) Plant Physiol , vol.100 , pp. 2013-2017
    • Deikman, J.1    Kline, R.2    Fischer, R.L.3
  • 41
    • 0023896637 scopus 로고
    • Diverse mechanisms for the regulation of ethylene-inducible gene expression
    • Lincoln J, Fischer R (1988) Diverse mechanisms for the regulation of ethylene-inducible gene expression. Mol Gen Genetics 212: 71-75.
    • (1988) Mol Gen Genetics , vol.212 , pp. 71-75
    • Lincoln, J.1    Fischer, R.2


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