메뉴 건너뛰기




Volumn 7, Issue 1, 2013, Pages

Viral expression associated with gastrointestinal adenocarcinomas in TCGA high-throughput sequencing data

Author keywords

Cancer; Herpes virus; Papilloma virus

Indexed keywords

TRANSCRIPTOME; VIRUS DNA; VIRUS RNA;

EID: 84901052899     PISSN: 14739542     EISSN: 14797364     Source Type: Journal    
DOI: 10.1186/1479-7364-7-23     Document Type: Article
Times cited : (50)

References (57)
  • 1
    • 69249090079 scopus 로고    scopus 로고
    • The search for infectious causes of human cancers: Where and why
    • Zur Hausen H: The search for infectious causes of human cancers: where and why. Virology 2009, 392(1):1-10.
    • (2009) Virology , vol.392 , Issue.1 , pp. 1-10
    • Zur Hausen, H.1
  • 3
    • 0036479008 scopus 로고    scopus 로고
    • Identification of foreign gene sequences by transcript filtering against the human genome
    • Weber G, Shendure J, Tanenbaum DM, Church GM, Meyerson M: Identification of foreign gene sequences by transcript filtering against the human genome. Nature genetics 2002, 30(2):141-142.
    • (2002) Nature Genetics , vol.30 , Issue.2 , pp. 141-142
    • Weber, G.1    Shendure, J.2    Tanenbaum, D.M.3    Church, G.M.4    Meyerson, M.5
  • 5
    • 84872583615 scopus 로고    scopus 로고
    • VirusSeq: Software to identify viruses and their integration sites using nextgeneration sequencing of human cancer tissue
    • Chen Y, Yao H, Thompson EJ, Tannir NM, Weinstein JN, Su X: VirusSeq: software to identify viruses and their integration sites using nextgeneration sequencing of human cancer tissue. Bioinformatics 2013, 29(2):266-267.
    • (2013) Bioinformatics , vol.29 , Issue.2 , pp. 266-267
    • Chen, Y.1    Yao, H.2    Thompson, E.J.3    Tannir, N.M.4    Weinstein, J.N.5    Su, X.6
  • 8
    • 79960297210 scopus 로고    scopus 로고
    • Transcriptome sequencing demonstrates that human papillomavirus is not active in cutaneous squamous cell carcinoma
    • Arron ST, Ruby JG, Dybbro E, Ganem D, DeRisi JL: Transcriptome sequencing demonstrates that human papillomavirus is not active in cutaneous squamous cell carcinoma. J Invest Dermatol 2011, 131(8):1745-1753.
    • (2011) J Invest Dermatol , vol.131 , Issue.8 , pp. 1745-1753
    • Arron, S.T.1    Ruby, J.G.2    Dybbro, E.3    Ganem, D.4    Derisi, J.L.5
  • 10
    • 84866894408 scopus 로고    scopus 로고
    • Comprehensive genomic characterization of squamous cell lung cancers
    • TCGARN
    • TCGARN: Comprehensive genomic characterization of squamous cell lung cancers. Nature 2012, 489(7417):519-525.
    • (2012) Nature , vol.489 , Issue.7417 , pp. 519-525
  • 11
    • 84863922124 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of human colon and rectal cancer
    • TCGARN
    • TCGARN: Comprehensive molecular characterization of human colon and rectal cancer. Nature 2012, 487(7407):330-337.
    • (2012) Nature , vol.487 , Issue.7407 , pp. 330-337
  • 12
  • 13
    • 34347323902 scopus 로고    scopus 로고
    • Incidence of cancers in people with HIV/AIDS compared with immunosuppressed transplant recipients: A meta-analysis
    • DOI 10.1016/S0140-6736(07)61050-2, PII S0140673607610502
    • Grulich AE, van Leeuwen MT, Falster MO, Vajdic CM: Incidence of cancers in people with HIV/AIDS compared with immunosuppressed transplant recipients: a meta-analysis. Lancet 2007, 370(9581):59-67. (Pubitemid 47017468)
    • (2007) Lancet , vol.370 , Issue.9581 , pp. 59-67
    • Grulich, A.E.1    Van Leeuwen, M.T.2    Falster, M.O.3    Vajdic, C.M.4
  • 16
    • 84885955536 scopus 로고    scopus 로고
    • Prevalence of Epstein-Barr Virus in a population of patients with inflammatory bowel disease: A prospective cohort study
    • Linton MS, Kroeker K, Fedorak D, Dieleman L, Fedorak RN: Prevalence of Epstein-Barr Virus in a population of patients with inflammatory bowel disease: a prospective cohort study. Aliment Pharmacol Ther 2013, 38:1248-1254.
    • (2013) Aliment Pharmacol Ther , vol.38 , pp. 1248-1254
    • Linton, M.S.1    Kroeker, K.2    Fedorak, D.3    Dieleman, L.4    Fedorak, R.N.5
  • 18
    • 76049103004 scopus 로고    scopus 로고
    • Epidemiology of human cytomegalovirus (HCMV) in an urban region of Germany: What has changed?
    • Lubeck PR, Doerr HW, Rabenau HF: Epidemiology of human cytomegalovirus (HCMV) in an urban region of Germany: what has changed? Med Microbiol Immunol 2010, 199(1):53-60.
    • (2010) Med Microbiol Immunol , vol.199 , Issue.1 , pp. 53-60
    • Lubeck, P.R.1    Doerr, H.W.2    Rabenau, H.F.3
  • 21
    • 0026531488 scopus 로고
    • Human herpesvirus type 6
    • review
    • Oren I, Sobel JD: Human herpesvirus type 6: review. Clin Infect Dis 1992, 14(3):741-746.
    • (1992) Clin Infect Dis , vol.14 , Issue.3 , pp. 741-746
    • Oren, I.1    Sobel, J.D.2
  • 23
    • 77951685554 scopus 로고    scopus 로고
    • Human herpesvirus 8 genomes and seroprevalence in United States blood donors
    • Qu L, Jenkins F, Triulzi DJ: Human herpesvirus 8 genomes and seroprevalence in United States blood donors. Transfusion 2010, 50 (5):1050-1056.
    • (2010) Transfusion , vol.50 , Issue.5 , pp. 1050-1056
    • Qu, L.1    Jenkins, F.2    Triulzi, D.J.3
  • 24
    • 0036303867 scopus 로고    scopus 로고
    • High prevalence of human herpesvirus 8 (HHV-8) infection in South Texas children
    • DOI 10.1002/jmv.10136
    • Baillargeon J, Leach CT, Deng JH, Gao SJ, Jenson HB: High prevalence of human herpesvirus 8 (HHV-8) infection in south Texas children. Journal of Medical Virology 2002, 67(4):542-548. (Pubitemid 34747675)
    • (2002) Journal of Medical Virology , vol.67 , Issue.4 , pp. 542-548
    • Baillargeon, J.1    Leach, C.T.2    Deng, J.-H.3    Gao, S.-J.4    Jenson, H.B.5
  • 26
    • 50149086269 scopus 로고    scopus 로고
    • Epstein-Barr virus and gastric carcinoma-viral carcinogenesis through epigenetic mechanisms
    • Uozaki H, Fukayama M: Epstein-Barr virus and gastric carcinoma-viral carcinogenesis through epigenetic mechanisms. Int J Clin Exp Pathol 2008, 1(3):198-216.
    • (2008) Int J Clin Exp Pathol , vol.1 , Issue.3 , pp. 198-216
    • Uozaki, H.1    Fukayama, M.2
  • 28
    • 80054003491 scopus 로고    scopus 로고
    • Epstein-Barr virus-associated gastric carcinoma
    • Fukayama M, Ushiku T: Epstein-Barr virus-associated gastric carcinoma. Pathol Res Pract 2011, 207(9):529-537.
    • (2011) Pathol Res Pract , vol.207 , Issue.9 , pp. 529-537
    • Fukayama, M.1    Ushiku, T.2
  • 29
    • 84862189812 scopus 로고    scopus 로고
    • Infection of Epstein-Barr virus in a gastric carcinoma cell line induces anchorage independence and global changes in gene expression
    • Marquitz AR, Mathur A, Shair KH, Raab-Traub N: Infection of Epstein-Barr virus in a gastric carcinoma cell line induces anchorage independence and global changes in gene expression. Proc Natl Acad Sci U S A 2012, 109(24):9593-9598.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , Issue.24 , pp. 9593-9598
    • Marquitz, A.R.1    Mathur, A.2    Shair, K.H.3    Raab-Traub, N.4
  • 33
    • 80052322501 scopus 로고    scopus 로고
    • Detection of viral DNA sequences in sporadic colorectal cancers in relation to CpG island methylation and methylator phenotype
    • Karpinski P, Myszka A, Ramsey D, Kielan W, Sasiadek MM: Detection of viral DNA sequences in sporadic colorectal cancers in relation to CpG island methylation and methylator phenotype. Tumour Biol 2011, 32(4):653-659.
    • (2011) Tumour Biol , vol.32 , Issue.4 , pp. 653-659
    • Karpinski, P.1    Myszka, A.2    Ramsey, D.3    Kielan, W.4    Sasiadek, M.M.5
  • 38
    • 70350044040 scopus 로고    scopus 로고
    • Detection of human papillomavirus DNA by polymerase chain reaction and southern blot hybridization in colorectal cancer patients
    • Salepci T, Yazici H, Dane F, Topuz E, Dalay N, Onat H, Aykan F, Seker M, Aydiner A: Detection of human papillomavirus DNA by polymerase chain reaction and southern blot hybridization in colorectal cancer patients. J Buon 2009, 14(3):495-499.
    • (2009) J Buon , vol.14 , Issue.3 , pp. 495-499
    • Salepci, T.1    Yazici, H.2    Dane, F.3    Topuz, E.4    Dalay, N.5    Onat, H.6    Aykan, F.7    Seker, M.8    Aydiner, A.9
  • 42
    • 79955466291 scopus 로고    scopus 로고
    • Microbial and viral pathogens in colorectal cancer
    • Collins D, Hogan AM, Winter DC: Microbial and viral pathogens in colorectal cancer. The Lancet Oncology 2011, 12(5):504-512.
    • (2011) The Lancet Oncology , vol.12 , Issue.5 , pp. 504-512
    • Collins, D.1    Hogan, A.M.2    Winter, D.C.3
  • 44
    • 0035956211 scopus 로고    scopus 로고
    • Oncogenic DNA viruses
    • Zur Hausen H: Oncogenic DNA viruses. Oncogene 2001, 20(54):7820-7823.
    • (2001) Oncogene , vol.20 , Issue.54 , pp. 7820-7823
    • Zur Hausen, H.1
  • 45
    • 68249152349 scopus 로고    scopus 로고
    • Herpesviruses as possible cofactors in HPV-16-related oncogenesis
    • Szostek S, Zawilinska B, Kopec J, Kosz-Vnenchak M: Herpesviruses as possible cofactors in HPV-16-related oncogenesis. Acta Biochim Pol 2009, 56 (2):337-342.
    • (2009) Acta Biochim Pol , vol.56 , Issue.2 , pp. 337-342
    • Szostek, S.1    Zawilinska, B.2    Kopec, J.3    Kosz-Vnenchak, M.4
  • 46
    • 78650659323 scopus 로고    scopus 로고
    • Viral hit and run-oncogenesis: Genetic and epigenetic scenarios
    • Niller HH, Wolf H, Minarovits J: Viral hit and run-oncogenesis: genetic and epigenetic scenarios. Cancer Letters 2011, 305(2):200-217.
    • (2011) Cancer Letters , vol.305 , Issue.2 , pp. 200-217
    • Niller, H.H.1    Wolf, H.2    Minarovits, J.3
  • 47
    • 70349267493 scopus 로고    scopus 로고
    • Prevalence, viral load, and physical status of HPV 16 and 18 in cervical adenosquamous carcinoma
    • Yoshida T, Sano T, Oyama T, Kanuma T, Fukuda T: Prevalence, viral load, and physical status of HPV 16 and 18 in cervical adenosquamous carcinoma. Virchows Arch 2009, 455(3):253-259.
    • (2009) Virchows Arch , vol.455 , Issue.3 , pp. 253-259
    • Yoshida, T.1    Sano, T.2    Oyama, T.3    Kanuma, T.4    Fukuda, T.5
  • 48
    • 63049096036 scopus 로고    scopus 로고
    • Clinicopathological and molecular characteristics of Epstein-Barr virus-associated gastric carcinoma: A meta-analysis
    • Lee JH, Kim SH, Han SH, An JS, Lee ES, Kim YS: Clinicopathological and molecular characteristics of Epstein-Barr virus-associated gastric carcinoma: a meta-analysis. J Gastroenterol Hepatol 2009, 24(3):354-365.
    • (2009) J Gastroenterol Hepatol , vol.24 , Issue.3 , pp. 354-365
    • Lee, J.H.1    Kim, S.H.2    Han, S.H.3    An, J.S.4    Lee, E.S.5    Kim, Y.S.6
  • 49
    • 66749103177 scopus 로고    scopus 로고
    • Recent topics related to human herpesvirus 6 cell tropism
    • Mori Y: Recent topics related to human herpesvirus 6 cell tropism. Cell Microbiol 2009, 11(7):1001-1006.
    • (2009) Cell Microbiol , vol.11 , Issue.7 , pp. 1001-1006
    • Mori, Y.1
  • 50
    • 0036559896 scopus 로고    scopus 로고
    • Papillomaviruses and cancer: From basic studies to clinical application
    • Zur Hausen H: Papillomaviruses and cancer: from basic studies to clinical application. Nature reviews Cancer 2002, 2(5):342-350. (Pubitemid 37328947)
    • (2002) Nature Reviews Cancer , vol.2 , Issue.5 , pp. 342-350
    • Zur Hausen, H.1
  • 56
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R: Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25(14):1754-1760.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 57
    • 77749291718 scopus 로고    scopus 로고
    • Confidence intervals that match Fisher's exact or Blaker's exact tests
    • Fay MP: Confidence intervals that match Fisher's exact or Blaker's exact tests. Biostatistics 2010, 11(2):373-374.
    • (2010) Biostatistics , vol.11 , Issue.2 , pp. 373-374
    • Fay, M.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.