Detection of viral DNA sequences in sporadic colorectal cancers in relation to CpG island methylation and methylator phenotype

Tumor Biology

Volumn 32, Issue 4, 2011, Pages 653-659

  Karpinski, Pawel ^a   Myszka, Aleksander ^b   Ramsey, David ^c   Kielan, Wojciech ^a   Sasiadek, Maria Malgorzata ^a  

^a WROCLAW MEDICAL UNIVERSITY   (Poland)

^b UNIVERSITY OF RZESZÓW   (Poland)

^c UNIVERSITY OF LIMERICK   (Ireland)

Author keywords

CIMP; Colorectal; CRC; EBV; JCV; Virus

Indexed keywords

VIRUS DNA;

ADULT; AGED; ARTICLE; CACNA1G GENE; COLORECTAL CANCER; CONTROLLED STUDY; CPG ISLAND; DNA METHYLATION; DNA SEQUENCE; EN1 GENE; EPSTEIN BARR VIRUS; FEMALE; GENE; GENE MUTATION; HUMAN; HUMAN ADENOVIRUS; HUMAN HERPESVIRUS 8; HUMAN TISSUE; IGF2 GENE; INHBB GENE; JC VIRUS; MAJOR CLINICAL STUDY; MALE; MINT1 GENE; MINT2 GENE; MINT31 GENE; MLH1 GENE; NEUROG1 GENE; NONHUMAN; P16 GENE; PHENOTYPE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RUNX3 GENE; SCTR GENE; SOCS1 GENE; VIRUS CARCINOGENESIS; VIRUS DETECTION; WART VIRUS;

EID: 80052322501     PISSN: 10104283     EISSN: 14230380     Source Type: Journal    
DOI: 10.1007/s13277-011-0165-6     Document Type: Article

References (41)

1. Bestor TH. The DNA methyltransferases of mammals. Hum Mol Genet. 2000;9:2395-402.
2. Karpinski P, Sasiadek MM, Blin N. Aberrant epigenetic patterns in the etiology of gastrointestinal cancers. J Appl Genet. 2008;49:1-10. (Pubitemid 351272295)
3. Weisenberger DJ, Siegmund KD, Campan M, et al. CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer. Nat Genet. 2006;38:787-93. (Pubitemid 43980599)
4. Issa JP. CpG island methylator phenotype in cancer. Nat Rev Cancer. 2004;4:988-93.
5. Doerfler W. Epigenetic mechanisms in human adenovirus type 12 oncogenesis. Semin Cancer Biol. 2009;19:136-43.
6. Brennan EP, Ehrich M, Brazil DP, et al. Comparative analysis of DNA methylation profiles in peripheral blood leukocytes versus lymphoblastoid cell lines. Epigenetics. 2009;3:159-64.
7. Grafodatskaya D, Choufani S, Ferreira JC, Butcher DT, Lou Y, Zhao C, et al. EBV transformation and cell culturing destabilizes DNA methylation in human lymphoblastoid cell lines. Genomics. 2010;2:73-83.
8. Flanagan JM. Host epigenetic modifications by oncogenic viruses. Br J Cancer. 2007;29:183-8. (Pubitemid 46160618)
9. Horwitz GA, Zhang K, McBrian MA, Grunstein M, Kurdistani SK, Berk AJ. Adenovirus small e1a alters global patterns of histone modification. Science. 2008;22:1084-5.
10. Zimmermann H, Degenkolbe R, Bernard HU, O'Connor MJ. The human papillomavirus type 16 E6 oncoprotein can down-regulate p53 activity by targeting the transcriptional coactivator CBP/p300. J Virol. 1999;73:6209-19. (Pubitemid 29327795)
11. Shamay M, Krithivas A, Zhang J, Hayward SD. Recruitment of the de novo DNA methyltransferase Dnmt3a by Kaposi's sarcoma-associated herpesvirus LANA. PNAS. 2006;26:14554-9. (Pubitemid 44484788)
12. Tsai CL, Li HP, Lu YJ, et al. Activation of DNA methyltransferase 1 by EBV LMP1 involves c-Jun NH2-terminal kinase signaling. Cancer Res. 2006;15:11668-76.
13. Goel A, Li MS, Nagasaka T, Shin SK, Fuerst F, Ricciardiello L, et al. Association of JC virus T-antigen expression with the methylator phenotype in sporadic colorectal cancers. Gastroenterology. 2006;130:1950-61. (Pubitemid 43816967)
14. Sapio MR, Posca D, Troncone G, Pettinato G, Palombini L, Rossi G, et al. Detection of BRAF mutation in thyroid papillary carcinomas by mutant allele-specific PCR amplification (MASA). Eur J Endocrinol. 2006;154:341-8.
15. Chan A, Issa JP, Morris JS, Hamilton SR, Rashid A. Concordant CpG island methylation in hyperplastic polyposis. Am J Pathol. 2002;160:529-36. (Pubitemid 34160330)
16. Karpinski P, Ramsey D, Grzebieniak Z, Sasiadek MM, Blin N. The CpG island methylator phenotype correlates with long-range epigenetic silencing in colorectal cancer. Mol Cancer Res. 2008;6:585-91. (Pubitemid 351521840)
17. Pan L, Milligan L, Michaeli J, Cesarman E, Knowles DM. Polymerase chain reaction detection of Kaposi's sarcomaassociated herpesvirus-optimized protocols and their application to myeloma. J Mol Diagn. 2001;3:32-8. (Pubitemid 32266149)
18. Fujinaga Y, Shimada M, Okazawa K, Fukushima M, Kato I, Fujinaga K. Simultaneous detection and typing of genital human papillomavirus DNA using the polymerase chain reaction. J Gen Virol. 1991;72:1039-44.
19. Echavarria M, Forman M, Ticehurst J, Dumler JS, Charache P. PCR method for detection of adenovirus in urine of healthy and human immunodeficiency virus-infected individuals. J Clin Microbiol. 1998;36:3323-6. (Pubitemid 28476186)
20. Schuebel KE, Chen W, Cope L, et al. Comparing the DNA hypermethylome with gene mutations in human colorectal cancer. PLoS Genet. 2007;3:1709-23. (Pubitemid 47510263)
21. Müller K, Heller H, Doerfler W. Foreign DNA integration. Genome-wide perturbations of methylation and transcription in the recipient genomes. J Biol Chem. 2001;27:14271-8.
22. Knösel T, Schewe C, Petersen N, Dietel M, Petersen I. Prevalence of infectious pathogens in Crohn's disease. Pathol Res Pract. 2009;205:223-30.
23. Cheng JY, Sheu LF, Meng CL, Lee WH, Lin JC. Detection of human papillomavirus DNA in colorectal carcinomas by polymerase chain reaction. Gut. 1995;37:87-90.
24. Bodaghi S, Yamanegi K, Xiao SY, Da Costa M, Palefsky JM, Zheng ZM. Colorectal papillomavirus infection in patients with colorectal cancer. Clin Cancer Res. 2005;11:2862-7. (Pubitemid 40525184)
25. Damin DC, Caetano MB, Rosito MA, Schwartsmann G, Damin AS, Frazzon AP, et al. Evidence for an association of human papillomavirus infection and colorectal cancer. Eur J Surg Oncol. 2007;33:569-74. (Pubitemid 46746534)
26. Atula S, Grenman R, Kujari H, Syrjänen S. Detection of human papillomavirus (HPV) in laryngeal carcinoma cell lines provides evidence for a heterogeneic cell population. Eur J Cancer. 1999;5:825-32. (Pubitemid 29258154)
27. Cho YJ, Chang MS, Park SH, Kim HS, Kim WH. In situ hybridization of Epstein-Barr virus in tumor cells and tumorinfiltrating lymphocytes of the gastrointestinal tract. Hum Pathol. 2001;32:297-301. (Pubitemid 32246804)
28. KijimaY, Hokita S, Takao S, et al. Epstein-Barr virus involvement is mainly restricted to lymphoepithelial type of gastric carcinoma among various epithelial neoplasms. J Med Virol. 2001;4:513-8. (Pubitemid 32613739)
29. Liu HX, Ding YQ, Li X, Yao KT. Investigation of Epstein-Barr virus in Chinese colorectal tumors. World J Gastroenterol. 2003;9:2464-8. (Pubitemid 37461249)
30. Bonnet M, Guinebretiere J-M, Kremmer E, Grunewald V, Benhamou E, Contesso G, et al. Detection of Epstein-Barr virus in invasive breast cancers. J Natl Cancer Inst. 1999;91:1376-81. (Pubitemid 29399995)
31. Sugawara Y, Mizugaki Y, Uchida T, Torii T, Imai S, Makuuchi M, et al. Detection of Epstein-Barr virus (EBV) in hepatocellular carcinoma tissue: a novel EBV latency characterized by the absence of EBV-encoded small RNA expression. Virology. 1999;256:196-202. (Pubitemid 29393354)
32. Yoshiyama H, Imai S, Shimizu N, Takada K. Epstein-Barr virus infection of human gastric carcinoma cells: implication of the existence of a new virus receptor different from CD21. J Virol. 1997;7:5688-91. (Pubitemid 27258255)
33. Shannon-Lowe CD, Neuhierl B, Baldwin G, Rickinson AB, Delecluse HJ. Resting B cells as a transfer vehicle for Epstein- Barr virus infection of epithelial cells. PNAS. 2006;18:7065-70.
34. Hernández Losa J, Fernandez-Soria V, Parada C, Sanchez-Prieto R, Ramón Y, Cajal S, et al. JC virus and human colon carcinoma: an intriguing and inconclusive association. Gastroenterology. 2003;1:268-9.
35. Hori R, Murai Y, Tsuneyama K, et al. Detection of JC virus DNA sequences in colorectal cancers in Japan. Virchows Arch. 2005;4:723-30. (Pubitemid 41571188)
36. Giuliani L, Ronci C, Bonifacio D, Di Bonito L, Favalli C, Perno CF, et al. Detection of oncogenic DNA viruses in colorectal cancer. Anticancer Res. 2008;28(2B):1405-10. (Pubitemid 351578887)
37. Burnett-Hartman AN, Newcomb PA, Potter JD. Infectious agents and colorectal cancer: a review of Helicobacter pylori, Streptococcus bovis, JC virus, and human papillomavirus. Cancer Epidemiol Biomarkers Prev. 2008;17:2970-9.
38. Nosho K, Shima K, Kure S, et al. JC virus T-antigen in colorectal cancer is associated with p53 expression and chromosomal instability, independent of CpG island methylator phenotype. Neoplasia. 2009;11:87-95.
39. Ricciardiello L, Baglioni M, Giovannini C, et al. Induction of chromosomal instability in colonic cells by the human polyomavirus JC virus. Cancer Res. 2003;63:7256-62. (Pubitemid 37413465)
40. Del Valle L, Khalili K. Detection of human polyomavirus proteins, T-antigen and agnoprotein, in human tumor tissue arrays. J Med Virol. 2010;5:806-11.
41. Cheng YW, Pincas H, Bacolod MD, et al. CpG island methylator phenotype associates with low-degree chromosomal abnormalities in colorectal cancer. Clin Cancer Res. 2008;14:6005-13.