Transcriptome sequencing demonstrates that human papillomavirus is not active in cutaneous squamous cell carcinoma

Journal of Investigative Dermatology

Volumn 131, Issue 8, 2011, Pages 1745-1753

  Arron, Sarah T ^a   Ruby, J Graham ^a,b   Dybbro, Eric ^a   Ganem, Don ^a,b   Derisi, Joseph L ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MESSENGER RNA; TRANSCRIPTOME;

ADULT; AGED; ARTICLE; BETA HUMAN PAPILLOMAVIRUS; CLINICAL ARTICLE; CUTANEOUS SQUAMOUS CELL CARCINOMA; FEMALE; HELA CELL; HIGH THROUGHPUT SEQUENCING; HUMAN; HUMAN CELL; HUMAN PAPILLOMAVIRUS TYPE 18; MALE; PERIUNGUAL SQUAMOUS CELL CARCINOMA; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RNA SEQUENCE; SKIN CARCINOMA; SKIN TUMOR; SQUAMOUS CELL CARCINOMA; UTERINE CERVIX CANCER; VIRUS EXPRESSION; VIRUS LOAD; VIRUS ONCOGENE; WART VIRUS;

EID: 79960297210     PISSN: 0022202X     EISSN: 15231747     Source Type: Journal    
DOI: 10.1038/jid.2011.91     Document Type: Article

References (61)

1. Alam M, Caldwell JB, Eliezri YD (2003) Human papillomavirus-associated digital squamous cell carcinoma: literature review and report of 21 new cases. J Am Acad Dermatol 48:385-93 (Pubitemid 36337075)
2. Altschul SF, Gish W, Miller W et al. (1990) Basic local alignment search tool. J Mol Biol 215:403-10
3. Antonsson A, Forslund O, Ekberg H et al. (2000) The ubiquity and impressive genomic diversity of human skin papillomaviruses suggest a commen-salic nature of these viruses. J Virol 74:11636-41 (Pubitemid 32222312)
4. Asgari MM, Kiviat NB, Critchlow CW et al. (2008) Detection of human papillomavirus DNA in cutaneous squamous cell carcinoma among immunocompetent individuals. J Invest Dermatol128:1409-17 (Pubitemid 351693210)
5. Bauer HM, Ting Y, Greer CE et al. (1991) Genital human papillomavirus infection in female university students as determined by a PCR-based method. JAMA 265:472-7
6. Benson DA, Karsch-Mizrachi I, Lipman DJ et al. (2009) Gen Bank. Nucleic Acids Res 37:D26-31
7. Berkhout RJ, Bouwes Bavinck JN, ter Schegget J (2000) Persistence of human papillomavirus DNA in benign and (pre)malignant skin lesions from renal transplant recipients. J Clin Microbiol 38:2087-96 (Pubitemid 30414320)
8. Berkhout RJ, Tieben LM, Smits HL et al. (1995) Nested PCR approach for detection and typing of epidermodysplasia verruciformis-associated human papillomavirus types in cutaneous cancers from renal transplant recipients. J Clin Microbiol 33:690-5
9. Bosch FX, Lorincz A, Munoz N et al. (2002) The causal relation between human papillomavirus and cervical cancer. J Clin Pathol 55:244-65 (Pubitemid 34293391)
10. Bouvard V, Baan R, Straif K et al. (2009) A review of human carcinogens-Part B: biological agents. Lancet Oncol 10:321-2
11. Bouwes Bavinck JN, Neale RE, Abeni D et al. (2010) Multicenterstudy of the association between betapapillomavirus infection and cutaneous squa-mous cell carcinoma. Cancer Res 70:9777-86
12. Boxman IL, Berkhout RJ, Mulder LH et al. (1997) Detection of human papillomavirus DNA in plucked hairs from renal transplant recipients and healthy volunteers. J Invest Dermatol 108:712-5 (Pubitemid 27192341)
13. Boxman IL, Russell A, Mulder LH et al. (2001) Association between epidermodysplasia verruciformis-associated human papillomavirus DNA in plucked eyebrow hair and solar keratoses. J Invest Dermatol 117:1108-12 (Pubitemid 34205905)
14. Cuypers HT, Selten G, Quint W et al. (1984) Murine leukemia virus-induced T-cell lymphomagenesis: integration of proviruses in a distinct chromo-somal region. Cell37:141-50 (Pubitemid 14079845)
15. Dang C, Koehler A, Forschner T et al. (2006) E6/E7 expression of human papillomavirus types in cutaneous squamous cell dysplasia and carcinoma in immunosuppressed organ transplant recipients. Br J Dermatol 155:129-36 (Pubitemid 43876405)
16. de Koning MN, Struijk L, Bavinck JN et al. (2007) Betapapillomaviruses frequently persist in the skin of healthy individuals. J Gen Virol 88:1489-95 (Pubitemid 46723231)
17. de Koning MN, Weissenborn SJ, Abeni D et al. (2009) Prevalence and associated factors of betapapillomavirus infections in individuals without cutaneous squamous cell carcinoma. J Gen Virol 90:1611-21
18. Dubina M, Goldenberg G (2009) Viral-associated nonmelanoma skin cancers: a review. Am J Dermatopathol 31:561-73
19. Dyson N, Howley PM, Munger K et al. (1989) The human papilloma virus-16 E7 oncoprotein is able to bind to the retinoblastoma gene product. Science 243:934-7 (Pubitemid 19066153)
20. Feng H, Shuda M, Chang Y et al. (2008) Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science319:1096-100 (Pubitemid 351300792)
21. Forslund O, Iftner T, Andersson K et al. (2007) Cutaneous human papillomaviruses found in sun-exposed skin: Beta-papillomavirus species 2 predominates in squamous cell carcinoma. J Infect Dis 196:876-83 (Pubitemid 47378937)
22. Forslund O, Lindelof B, Hradil E et al. (2004) High prevalence of cutaneous human papillomavirus DNA on the top of skin tumors but not in ''Stripped'' biopsiesfrom the sametumors.J Invest Dermatol123:388-94 (Pubitemid 38951835)
23. Forslund O, Ly H, Higgins G (2003a) Improved detection of cutaneous human papillomavirus DNA by single tube nested 'hanging droplet' PCR. J Virol Methods 110:129-36 (Pubitemid 36645255)
24. Forslund O, Ly H, Reid C et al. (2003b) A broad spectrum of human papillomavirus types is present in the skin of Australian patients with non-melanoma skin cancers and solar keratosis. Br J Dermatol 149:64-73 (Pubitemid 36966512)
25. Fujita PA, Rhead B, Zweig AS et al. (2010) The UCSC Genome Browser database: update 2011. Nucleic Acids Res 39(Database issue):D876-82
26. Greninger AL, Runckel C, Chiu CY et al. (2009) The complete genome of klassevirus -a novel picornavirus in pediatric stool. Virol J 6:82
27. Hartevelt MM, Bavinck JN, Kootte AM et al. (1990) Incidence of skin cancer after renal transplantation in The Netherlands. Transplantation 49:506-9 (Pubitemid 20110465)
28. Harwood CA, Mc Gregor JM, Proby CM et al. (1999) Human papillomavirus and the development of non-melanoma skin cancer. J Clin Pathol 52:249-53 (Pubitemid 29161484)
29. Harwood CA, Surentheran T, Mc Gregor JM et al. (2000) Human papilloma-virus infection and non-melanoma skin cancer in immunosuppressed and immunocompetent individuals. J Med Virol 61:289-97 (Pubitemid 30368527)
30. Hazard K, Karlsson A, Andersson K et al. (2007) Cutaneous human papillomaviruses persist on healthy skin. J Invest Dermatol127:116-9 (Pubitemid 46005668)
31. Houben R, Shuda M, Weinkam R et al. (2010) Merkel cell polyomavirus infected Merkel cell carcinoma cells require expression of viral T antigens. J Virol 84:7064-72
32. IARC (2007) Human papillomaviruses. IARC Monogr Eval Carcinog Risks Hum 90:1-636
33. Imanishi T, Itoh T, Suzuki Y et al. (2004) Integrative annotation of 21,037 human genes validated by full-length c DNA clones. PLoS Biol 2:e162
34. Jensen P, Hansen S, Moller B et al. (1999) Skin cancer in kidney and heart transplant recipients and different long-term immunosuppressive therapy regimens. J Am Acad Dermatol 40:177-86 (Pubitemid 29072794)
35. Karagas MR, Nelson HH, Sehr P et al. (2006) Human papillomavirus infection and incidence of squamous cell and basal cell carcinomas of the skin. J Natl Cancer Inst 98:389-95
36. Kent WJ (2002) BLAT-the BLAST-likealignmenttool. Genome Res12:656-64
37. Kreuter A, Gambichler T, Pfister H et al. (2009) Diversity of human papillomavirus types in periungual squamous cell carcinoma. Br J Dermatol161:1262-9
38. Lander ES, Linton LM, Birren B et al. (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921 (Pubitemid 32165345)
39. Le Boit PE (2002) Can we understand keratoacanthoma? Am J Dermatopathol 24:166-8 (Pubitemid 34272892)
40. Lefranc MP (2001) IMGT, the international Im Muno Gene Tics database. Nucleic Acids Res 29:207-9
41. Lindelof B, Sigurgeirsson B, Gabel H et al. (2000) Incidence of skin cancer in 5356 patients following organ transplantation. Br J Dermatol 143:513-9
42. Luron L, Avril MF, Sarasin A et al. (2007) Prevalence of human papillomavirus in skin tumors from repair deficient xeroderma pigmentosum patients. Cancer Lett250:213-9 (Pubitemid 46529447)
43. Manos M, Ting Y, Wright D et al. (1989) Use of polymerase chain reaction amplification for the detection of genital human papillomaviruses. In: Furth M, Greaves M (eds) Cancer Cells 7: Molecular Diagnostics of Human Cancer. Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, 209-14
44. Moy RL, Eliezri YD, Nuovo GJ et al. (1989) Human papillomavirus type 16 DNA in periungual squamous cell carcinomas. JAMA 261:2669-73 (Pubitemid 19127962)
45. Parkin DM (2006) The global health burden of infection-associated cancers in the year 2002. Int J Cancer 118:3030-44
46. Purdie KJ, Surentheran T, Sterling JC et al. (2005) Human papillomavirus gene expression in cutaneous squamous cell carcinomas from immunosup-pressed and immunocompetent individuals. J Invest Dermatol 125:98-107 (Pubitemid 40981430)
47. Sanchez-Lanier M, Triplett C, Campion M (1994) Possible role for human papillomavirus 16 in squamous cell carcinoma of the finger.J Med Virol 44:369-78
48. Scheffner M, Werness BA, Huibregtse JM et al. (1990) The E6 oncoprotein encoded by human papillomavirus types 16 and 18 promotes the degradation of p53. Cell 63:1129-36 (Pubitemid 120035062)
49. Shamanin V, Glover M, Rausch C et al. (1994) Specific types of human papillomavirus found in benign proliferations and carcinomas of the skin in immunosuppressed patients. Cancer Res 54:4610-3 (Pubitemid 24276482)
50. Shamanin V, zur Hausen H, Lavergne D et al. (1996) Human papillomavirus infections in nonmelanoma skin cancers from renal transplant recipients and nonimmunosuppressed patients. J Natl Cancer Inst 88:802-11 (Pubitemid 26187389)
51. Snijders PJ, van den Brule AJ, Jacobs MV et al. (2005) HPV DNA detection and typing in cervical scrapes. Methods Mol Med119:101-14
52. Struijk L, Bouwes Bavinck JN, Wanningen P et al. (2003) Presence of human papillomavirus DNA in plucked eyebrow hairs is associated with a history of cutaneous squamous cell carcinoma. J Invest Dermatol 121:1531-5 (Pubitemid 38005509)
53. Surentheran T, Harwood CA, Spink PJ et al. (1998) Detection and typing of human papillomaviruses in mucosal and cutaneous biopsies from immunosuppressed and immunocompetent patients and patients with epidermodysplasia verruciformis: a unified diagnostic approach. J Clin Pathol 51:606-10 (Pubitemid 28394254)
54. Theunis A, Andre J, Noel JC (1999) Evaluation of the role of genital human papillomavirus in the pathogenesis of ungual squamous cell carcinoma. Dermatology 198:206-8 (Pubitemid 29204619)
55. Vajdic CM, Mc Donald SP, Mc Credie MR et al. (2006) Cancer incidence before and after kidney transplantation. JAMA 296:2823-31 (Pubitemid 44969182)
56. Weissenborn SJ, Nindl I, Purdie K et al. (2005) Human papillomavirus-DNA loads in actinic keratoses exceed those in non-melanoma skin cancers. J Invest Dermatol 125:93-7 (Pubitemid 40981429)
57. Welch TA (1984) A technique for high-performance data-compression. Computer 17:8-19
58. Werness BA, Levine AJ, Howley PM (1990) Association of human papillomavirus types 16 and 18 E6 proteins with p53. Science 248:76-9
59. Yozwiak NL, Skewes-Cox P, Gordon A et al. (2010) Human Enterovirus 109: a novel inter-species recombinant enterovirus discovered in acute pediatric respiratory illness in Nicaragua. J Virol 84:9047-58
60. Zur Hausen H (1996) Papillomavirus infections-a major cause of human cancers. Biochim Biophys Acta 1288:F55-78 (Pubitemid 26335492)
61. Zur Hausen H (2009) The search for infectious causes of human cancers: where and why. Virology392:1-10