메뉴 건너뛰기




Volumn , Issue , 2010, Pages 11-47

PCR methodology

Author keywords

Amplification; Applications; Components of PCR; Conventional PCR; Detection; DNA; Extraction; Instrumentation; Internal controls; Limitations; Molecular typing; Multiplex PCR; Probes; Quantitative PCR; Real time PCR; RNA; Storage

Indexed keywords


EID: 84900161365     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-90-481-9039-3_2     Document Type: Chapter
Times cited : (3)

References (93)
  • 1
    • 0036219399 scopus 로고    scopus 로고
    • Minor groove binder-conjugated DNA probes for quantitative DNA detection by hybridization-triggered fluorescence
    • 946-949
    • Afonina IA, ReedMW, Lusby E et al (2002) Minor groove binder-conjugated DNA probes for quantitative DNA detection by hybridization-triggered fluorescence. Biotechniques 32:940-944, 946-949
    • (2002) Biotechniques , vol.32 , pp. 940-944
    • Afonina, I.A.1    Reed, M.W.2    Lusby, E.3
  • 2
    • 0017614807 scopus 로고
    • Bacteriophage-typing designations of Salmonella typhimurium
    • Anderson ES, Ward LR, Saxe MJ et al (1977) Bacteriophage-typing designations of Salmonella typhimurium. J Hyg (Lond) 78:297-300
    • (1977) J Hyg (Lond) , vol.78 , pp. 297-300
    • Anderson, E.S.1    Ward, L.R.2    Saxe, M.J.3
  • 3
    • 67349209853 scopus 로고    scopus 로고
    • Next-generation DNA sequencing techniques
    • Ansorge WJ (2009) Next-generation DNA sequencing techniques. N Biotechnol 25:195-203
    • (2009) N Biotechnol , vol.25 , pp. 195-203
    • Ansorge, W.J.1
  • 4
    • 0033952657 scopus 로고    scopus 로고
    • Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array
    • Anthony RM, Brown TJ, French GL (2000) Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array. J Clin Microbiol 38:781-788
    • (2000) J Clin Microbiol , vol.38 , pp. 781-788
    • Anthony, R.M.1    Brown, T.J.2    French, G.L.3
  • 5
    • 0035696280 scopus 로고    scopus 로고
    • Rep-PCR-a variant to RAPD or an independent technique of bacteria genotyping? A comparison of the typing properties of rep-PCR with other recognised methods of genotyping of microorganisms
    • Baldy-Chudzik K (2001) Rep-PCR-a variant to RAPD or an independent technique of bacteria genotyping? A comparison of the typing properties of rep-PCR with other recognised methods of genotyping of microorganisms. Acta Microbiol Pol 50:189-204
    • (2001) Acta Microbiol Pol , vol.50 , pp. 189-204
    • Baldy-Chudzik, K.1
  • 6
    • 0029998772 scopus 로고    scopus 로고
    • Sequencing emm-specific PCR products for routine and accurate typing of group A Streptococci
    • Beall B, Facklam R, Thompson T (1996) Sequencing emm-specific PCR products for routine and accurate typing of group A Streptococci. J Clin Microbiol 34:953-958
    • (1996) J Clin Microbiol , vol.34 , pp. 953-958
    • Beall, B.1    Facklam, R.2    Thompson, T.3
  • 7
    • 0031984605 scopus 로고    scopus 로고
    • Integrated amplification and detection of the C677T point mutation in the methylenetetrahydrofolate reductase gene by fluorescence resonance energy transfer and probe melting curves
    • Bernard PS, Lay MJ, Wittwer CT (1998) Integrated amplification and detection of the C677T point mutation in the methylenetetrahydrofolate reductase gene by fluorescence resonance energy transfer and probe melting curves. Anal Biochem 255:101-107
    • (1998) Anal Biochem , vol.255 , pp. 101-107
    • Bernard, P.S.1    Lay, M.J.2    Wittwer, C.T.3
  • 8
    • 34547490318 scopus 로고    scopus 로고
    • Specific detection of Campylobacter jejuni from faeces using single nucleotide polymorphisms
    • Best EL, Fox AJ, Owen RJ et al (2007) Specific detection of Campylobacter jejuni from faeces using single nucleotide polymorphisms. Epidemiol Infect 135:839-846
    • (2007) Epidemiol Infect , vol.135 , pp. 839-846
    • Best, E.L.1    Fox, A.J.2    Owen, R.J.3
  • 9
    • 0028284335 scopus 로고
    • Use of ribotyping in epidemiological surveillance of nosocomial outbreaks
    • Bingen EH, Denamur E, Elion J (1994) Use of ribotyping in epidemiological surveillance of nosocomial outbreaks. Clin Microbiol Rev 7:311-327
    • (1994) Clin Microbiol Rev , vol.7 , pp. 311-327
    • Bingen, E.H.1    Denamur, E.2    Elion, J.3
  • 10
    • 0025089978 scopus 로고
    • Rapid and simple method for purification of nucleic acids
    • Boom et al (1990) Rapid and simple method for purification of nucleic acids. J Clin Microbiol 28:495-503
    • (1990) J Clin Microbiol , vol.28 , pp. 495-503
    • Boom1
  • 11
    • 28544453535 scopus 로고    scopus 로고
    • Towards a nucleic acid-based diagnosis in clinical parasitology and mycology
    • Bretagne S, Costa J-M (2006) Towards a nucleic acid-based diagnosis in clinical parasitology and mycology. Clin Chim Acta 363:221-228
    • (2006) Clin Chim Acta , vol.363 , pp. 221-228
    • Bretagne, S.1    Costa, J.-M.2
  • 12
    • 58249100086 scopus 로고    scopus 로고
    • Fluorescent-BOX-PCR for resolving bacterial genetic diversity, endemism and biogeography
    • Brusetti L, Malkhazova I, Gtari M et al (2008) Fluorescent-BOX-PCR for resolving bacterial genetic diversity, endemism and biogeography. BMC Microbiol 8:220
    • (2008) BMC Microbiol , vol.8 , pp. 220
    • Brusetti, L.1    Malkhazova, I.2    Gtari, M.3
  • 13
    • 62949204608 scopus 로고    scopus 로고
    • Carbapenem resistance among Pseudomonas aeruginosa strains from India: Evidence for nationwide endemicity of multiple metallo-beta-lactamase clones (VIM-2,-5,-6, and-11 and the newly characterized VIM-18
    • Castanheira M, Bell JM, Turnidge JD et al (2009) Carbapenem resistance among Pseudomonas aeruginosa strains from India: evidence for nationwide endemicity of multiple metallo-beta-lactamase clones (VIM-2,-5,-6, and-11 and the newly characterized VIM-18). Antimicrob Agents Chemother 53:1225-1227
    • (2009) Antimicrob Agents Chemother , vol.53 , pp. 1225-1227
    • Castanheira, M.1    Bell, J.M.2    Turnidge, J.D.3
  • 14
    • 67349172946 scopus 로고    scopus 로고
    • Rapid and accurate typing of Bordetella pertussis targeting genes encoding acellular vaccine antigens using real time PCR and high resolution melt analysis
    • Chan WF, Maharjan RP, Reeves PR et al (2009) Rapid and accurate typing of Bordetella pertussis targeting genes encoding acellular vaccine antigens using real time PCR and high resolution melt analysis. J Microbiol Methods 77:326-329
    • (2009) J Microbiol Methods , vol.77 , pp. 326-329
    • Chan, W.F.1    Maharjan, R.P.2    Reeves, P.R.3
  • 15
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Meth Anal Biochem 162:156-159
    • (1987) Meth Anal Biochem , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 16
    • 33644637478 scopus 로고    scopus 로고
    • Staphylococcal cassette chromosome mec (SCCmec) typing of methicillin-resistant Staphylococcus aureus strains isolated in 11 Asian countries: A proposal for a new nomenclature for SCCmec elements
    • Chongtrakool P, Ito T, Ma XX et al (2006) Staphylococcal cassette chromosome mec (SCCmec) typing of methicillin-resistant Staphylococcus aureus strains isolated in 11 Asian countries: a proposal for a new nomenclature for SCCmec elements. Antimicrob Agents Chemother 50:1001-1012
    • (2006) Antimicrob Agents Chemother , vol.50 , pp. 1001-1012
    • Chongtrakool, P.1    Ito, T.2    Ma, X.X.3
  • 17
    • 28544438480 scopus 로고    scopus 로고
    • Present and future of rapid and/or high-throughput methods for nucleic acid testing
    • Csako G (2006) Present and future of rapid and/or high-throughput methods for nucleic acid testing. Clin Chim Acta 363:6-31
    • (2006) Clin Chim Acta , vol.363 , pp. 6-31
    • Csako, G.1
  • 18
    • 65449179542 scopus 로고    scopus 로고
    • Impact of pneumococcal conjugate vaccine on infections caused by antibiotic-resistant Streptococcus pneumoniae
    • Dagan R (2009) Impact of pneumococcal conjugate vaccine on infections caused by antibiotic-resistant Streptococcus pneumoniae. Clin Microbiol Infect 15 Suppl 3: 16-20
    • (2009) Clin Microbiol Infect , vol.15 , Issue.SUPPL. 3 , pp. 16-20
    • Dagan, R.1
  • 19
    • 50849086724 scopus 로고    scopus 로고
    • Multiplex mass tag-PCR for respiratory pathogens in pediatric nasopharyngeal washes negative by conventional diagnostic testing shows a high prevalence of viruses belonging to a newly recognised rhinovirus clade
    • Dominguez SR, Briese T, Palacios G, Hui J, Villari J, Kapoor V, Tokarz R, Glodé MP, Anderson MS, Robinson CC, Holmes KV, Lipkin WI (2008) Multiplex mass tag-PCR for respiratory pathogens in pediatric nasopharyngeal washes negative by conventional diagnostic testing shows a high prevalence of viruses belonging to a newly recognised rhinovirus clade. J Clin Virol 43:219-222
    • (2008) J Clin Virol , vol.43 , pp. 219-222
    • Dominguez, S.R.1    Briese, T.2    Palacios, G.3    Hui, J.4    Villari, J.5    Kapoor, V.6    Tokarz, R.7    Glodé, M.P.8    Anderson, M.S.9    Robinson, C.C.10    Holmes, K.V.11    Lipkin, W.I.12
  • 20
    • 33244471135 scopus 로고    scopus 로고
    • Clonal analysis of the serogroup B meningococci causing New Zealand's epidemic
    • Dyet KH, Martin DR (2006) Clonal analysis of the serogroup B meningococci causing New Zealand's epidemic. Epidemiol Infect 134:377-383
    • (2006) Epidemiol Infect , vol.134 , pp. 377-383
    • Dyet, K.H.1    Martin, D.R.2
  • 21
    • 67849090458 scopus 로고    scopus 로고
    • Molecular genotyping of microbes by multilocus PCR and mass spectrometry: A new tool for hospital infection control and public health surveillance
    • Ecker DJ, Massire C, Blyn BL et al (2009) Molecular genotyping of microbes by multilocus PCR and mass spectrometry: a new tool for hospital infection control and public health surveillance. Methods Mol Biol 551:71-87
    • (2009) Methods Mol Biol , vol.551 , pp. 71-87
    • Ecker, D.J.1    Massire, C.2    Blyn, B.L.3
  • 22
    • 38149098343 scopus 로고    scopus 로고
    • Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains
    • Faria NA, Carrico JA, Oliveira DC et al (2008) Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains. J Clin Microbiol 46:136-144
    • (2008) J Clin Microbiol , vol.46 , pp. 136-144
    • Faria, N.A.1    Carrico, J.A.2    Oliveira, D.C.3
  • 23
    • 67849106465 scopus 로고    scopus 로고
    • Amplified fragment-length polymorphism analysis
    • Fry NK, Savelkoul PH, Visca P (2009) Amplified fragment-length polymorphism analysis. Methods Mol Biol 551:89-104
    • (2009) Methods Mol Biol , vol.551 , pp. 89-104
    • Fry, N.K.1    Savelkoul, P.H.2    Visca, P.3
  • 24
    • 77950687946 scopus 로고    scopus 로고
    • Differentiation of Mycoplasma gallisepticum strains using PCR and high resolution melting curve analysis
    • Ghorashi SA, Noormohammadi AH, Markham PF (2010) Differentiation of Mycoplasma gallisepticum strains using PCR and high resolution melting curve analysis. Microbiology 156:1019-1029
    • (2010) Microbiology , vol.156 , pp. 1019-1029
    • Ghorashi, S.A.1    Noormohammadi, A.H.2    Markham, P.F.3
  • 25
    • 52249089829 scopus 로고    scopus 로고
    • Usefulness of mec-associated direct repeat unit (dru) typing in the epidemiological analysis of highly clonal methicillin-resistant Staphylococcus aureus in Scotland
    • Goering RV, Morrison D, Al-Doori Z et al (2008) Usefulness of mec-associated direct repeat unit (dru) typing in the epidemiological analysis of highly clonal methicillin-resistant Staphylococcus aureus in Scotland. Clin Microbiol Infect 14:964-969
    • (2008) Clin Microbiol Infect , vol.14 , pp. 964-969
    • Goering, R.V.1    Morrison, D.2    Al-Doori, Z.3
  • 27
    • 0025861818 scopus 로고
    • Detection of specific polymerase chain reaction product by utilizing the 5'-3' exonuclease activity of Thermus aquaticus DNA polymerase
    • Holland PM, Abramson RD,Watson R (1991) Detection of specific polymerase chain reaction product by utilizing the 5'-3' exonuclease activity of Thermus aquaticus DNA polymerase. Proc Natl Acad Sci U S A 88:7276-7280
    • (1991) Proc Natl Acad Sci U S A , vol.88 , pp. 7276-7280
    • Holland, P.M.1    Abramson, R.D.2    Watson, R.3
  • 28
    • 34547548626 scopus 로고    scopus 로고
    • Automated comparative sequence analysis by base-specific cleavage and mass spectrometry for nucleic acid-based microbial typing
    • Honisch C, Chen Y, Mortimer C et al (2007) Automated comparative sequence analysis by base-specific cleavage and mass spectrometry for nucleic acid-based microbial typing. Proc Natl Acad Sci U S A 104:10649-10654
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 10649-10654
    • Honisch, C.1    Chen, Y.2    Mortimer, C.3
  • 29
    • 33845547024 scopus 로고    scopus 로고
    • Staphylococcus aureus genotyping using novel real-time PCR formats
    • Huygens F, Inman-Bamber J, Nimmo GR et al (2006) Staphylococcus aureus genotyping using novel real-time PCR formats. J Clin Microbiol 44:3712-3719
    • (2006) J Clin Microbiol , vol.44 , pp. 3712-3719
    • Huygens, F.1    Inman-Bamber, J.2    Nimmo, G.R.3
  • 30
    • 77950688562 scopus 로고    scopus 로고
    • Multilaboratory validation study of standardized multiple-locus variable-number tandem repeat analysis protocol for shiga toxinproducing Escherichia coli O157: A novel approach to normalize fragment size data between capillary electrophoresis platforms
    • Hyytia-Trees E, Lafon P, Vauterin P et al (2009) Multilaboratory validation study of standardized multiple-locus variable-number tandem repeat analysis protocol for shiga toxinproducing Escherichia coli O157: a novel approach to normalize fragment size data between capillary electrophoresis platforms. Foodborne Pathog Dis 23:112-117
    • (2009) Foodborne Pathog Dis , vol.23 , pp. 112-117
    • Hyytia-Trees, E.1    Lafon, P.2    Vauterin, P.3
  • 31
    • 0029076080 scopus 로고
    • Homogeneous quantitative assay of hepatitis C virus RNA by polymerase chain reaction in the presence of a fluorescent intercalater
    • Ishiguro T, Saitoh J, Yawata H et al Y (1995) Homogeneous quantitative assay of hepatitis C virus RNA by polymerase chain reaction in the presence of a fluorescent intercalater. Anal Biochem 229:207-213
    • (1995) Anal Biochem , vol.229 , pp. 207-213
    • Ishiguro, T.1    Saitoh, J.2    Yawata, H.3    Et Al., Y.4
  • 32
    • 0026055010 scopus 로고
    • Simple procedure for DNA isolation from Human Serum
    • Ishizawa M, Kobaashi Y, Miyama T, et al (1991) Simple procedure for DNA isolation from Human Serum. Nucleic Acids Res 19:5792
    • (1991) Nucleic Acids Res , vol.19 , pp. 5792
    • Ishizawa, M.1    Kobaashi, Y.2    Miyama, T.3
  • 33
    • 46849089893 scopus 로고    scopus 로고
    • Microbial forensics: DNA fingerprinting of Bacillus anthracis (anthrax
    • Keim P, Pearson T, Okinaka R (2008) Microbial forensics: DNA fingerprinting of Bacillus anthracis (anthrax). Anal Chem 80:4791-4799
    • (2008) Anal Chem , vol.80 , pp. 4791-4799
    • Keim, P.1    Pearson, T.2    Okinaka, R.3
  • 34
    • 4444308959 scopus 로고    scopus 로고
    • Anthrax molecular epidemiology and forensics: Using the appropriate marker for different evolutionary scales
    • Keim P, Van Ert MN, Pearson T et al (2004) Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect Genet Evol 4:205-213
    • (2004) Infect Genet Evol , vol.4 , pp. 205-213
    • Keim, P.1    Van Ert, M.N.2    Pearson, T.3
  • 35
    • 34250899593 scopus 로고    scopus 로고
    • Multiplex PCR-based reverse line blot hybridization assay (mPCR/RLB)-a practical epidemiological and diagnostic tool
    • Kong F, Gilbert GL (2006) Multiplex PCR-based reverse line blot hybridization assay (mPCR/RLB)-a practical epidemiological and diagnostic tool. Nat Protoc 1:2668-2680
    • (2006) Nat Protoc , vol.1 , pp. 2668-2680
    • Kong, F.1    Gilbert, G.L.2
  • 36
    • 42149127189 scopus 로고    scopus 로고
    • Salmonella phages and prophages-genomics and practical aspects
    • Kropinski AM, Sulakvelidze A, Konczy P et al (2007) Salmonella phages and prophages-genomics and practical aspects. Methods Mol Biol 394:133-175
    • (2007) Methods Mol Biol , vol.394 , pp. 133-175
    • Kropinski, A.M.1    Sulakvelidze, A.2    Konczy, P.3
  • 37
    • 70349349063 scopus 로고    scopus 로고
    • Simple, rapid, and inexpensive detection of Neisseria gonorrhoeae resistance mechanisms using heat-denatured isolates and SYBR green-based real-time PCR
    • Kugelman G, Tapsall JW, Goire N et al (2009) Simple, rapid, and inexpensive detection of Neisseria gonorrhoeae resistance mechanisms using heat-denatured isolates and SYBR green-based real-time PCR. Antimicrob Agents Chemother 53:4211-4216
    • (2009) Antimicrob Agents Chemother , vol.53 , pp. 4211-4216
    • Kugelman, G.1    Tapsall, J.W.2    Goire, N.3
  • 38
    • 42149132230 scopus 로고    scopus 로고
    • Amplified fragment length polymorphism analysis of Salmonella enterica
    • Lan R, Reeves PR (2007) Amplified fragment length polymorphism analysis of Salmonella enterica. Methods Mol Biol 394:119-132
    • (2007) Methods Mol Biol , vol.394 , pp. 119-132
    • Lan, R.1    Reeves, P.R.2
  • 39
    • 0031451539 scopus 로고    scopus 로고
    • Real-time fluorescence genotyping of factor v Leiden during rapid-cycle PCR
    • Lay MJ, Wittwer CT (1997) Real-time fluorescence genotyping of factor V Leiden during rapid-cycle PCR. Clin Chem 43:2262-2267
    • (1997) Clin Chem , vol.43 , pp. 2262-2267
    • Lay, M.J.1    Wittwer, C.T.2
  • 40
    • 69949133684 scopus 로고    scopus 로고
    • Emerging pneumococcal carriage serotypes in a high-risk population receiving universal 7-valent pneumococcal conjugate vaccine and 23-valent polysaccharide vaccine since 2001
    • Leach AJ, Morris PS, McCallum GB et al (2009) Emerging pneumococcal carriage serotypes in a high-risk population receiving universal 7-valent pneumococcal conjugate vaccine and 23-valent polysaccharide vaccine since 2001. BMC Infect Dis 9:121
    • (2009) BMC Infect Dis , vol.9 , pp. 121
    • Leach, A.J.1    Morris, P.S.2    McCallum, G.B.3
  • 41
    • 0027291689 scopus 로고
    • Allelic discrimination by nick-translation PCR with fluorogenic probes
    • Lee LG, Connell CR, Bloch W (1993) Allelic discrimination by nick-translation PCR with fluorogenic probes. Nucleic Acids Res 21: 3761-3766
    • (1993) Nucleic Acids Res , vol.21 , pp. 3761-3766
    • Lee, L.G.1    Connell, C.R.2    Bloch, W.3
  • 42
    • 0028834086 scopus 로고
    • Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization
    • Livak KJ, Flood SJ,Marmaro J et al (1995) Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods Appl 4:357-362
    • (1995) PCR Methods Appl , vol.4 , pp. 357-362
    • Livak, K.J.1    Flood, S.J.2    Marmaro, J.3
  • 44
    • 13144252236 scopus 로고    scopus 로고
    • Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
    • Maiden MC, Bygraves JA, Feil E et al (1998) Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A 95:3140-3145
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 3140-3145
    • Maiden, M.C.1    Bygraves, J.A.2    Feil, E.3
  • 45
    • 0030827108 scopus 로고    scopus 로고
    • Discrimination of Campylobacter jejuni isolates by fla gene sequencing
    • Meinersmann RJ, Helsel LO, Fields PI et al (1997) Discrimination of Campylobacter jejuni isolates by fla gene sequencing. J Clin Microbiol 35:2810-2814
    • (1997) J Clin Microbiol , vol.35 , pp. 2810-2814
    • Meinersmann, R.J.1    Helsel, L.O.2    Fields, P.I.3
  • 46
    • 58149165208 scopus 로고    scopus 로고
    • High-throughput typing of Staphylococcus aureus by amplified fragment length polymorphism (AFLP) or multi-locus variable number of tandem repeat analysis (MLVA) reveals consistent strain relatedness
    • Melles DC, Schouls L, Francois P et al (2009) High-throughput typing of Staphylococcus aureus by amplified fragment length polymorphism (AFLP) or multi-locus variable number of tandem repeat analysis (MLVA) reveals consistent strain relatedness. Eur J Clin Microbiol Infect Dis 28:39-45
    • (2009) Eur J Clin Microbiol Infect Dis , vol.28 , pp. 39-45
    • Melles, D.C.1    Schouls, L.2    Francois, P.3
  • 47
    • 53149145730 scopus 로고    scopus 로고
    • Characterization of clonal relatedness among the natural population of Staphylococcus aureus strains by using spa sequence typing and the BURP (based upon repeat patterns) algorithm
    • Mellmann A, Weniger T, Berssenbrugge C et al (2008) Characterization of clonal relatedness among the natural population of Staphylococcus aureus strains by using spa sequence typing and the BURP (based upon repeat patterns) algorithm. J Clin Microbiol 46:2805-2808
    • (2008) J Clin Microbiol , vol.46 , pp. 2805-2808
    • Mellmann, A.1    Weniger, T.2    Berssenbrugge, C.3
  • 48
    • 75249105299 scopus 로고    scopus 로고
    • Campylobacter jejuni and Campylobacter coli genotyping by high resolution melting analysis of a flaA fragment
    • Merchant-Patel S, Blackall PJ, Templeton J et al (2010) Campylobacter jejuni and Campylobacter coli genotyping by high resolution melting analysis of a flaA fragment. Appl Environ Microbiol 76:493-499
    • (2010) Appl Environ Microbiol , vol.76 , pp. 493-499
    • Merchant-Patel, S.1    Blackall, P.J.2    Templeton, J.3
  • 49
    • 0035713577 scopus 로고    scopus 로고
    • Using molecular beacons to detect single-nucleotide polymorphisms with real-time PCR
    • Mhlanga MM, Malmberg L (2001) Using molecular beacons to detect single-nucleotide polymorphisms with real-time PCR. Methods 25:463-471
    • (2001) Methods , vol.25 , pp. 463-471
    • Mhlanga, M.M.1    Malmberg, L.2
  • 50
    • 34247211213 scopus 로고    scopus 로고
    • Comparative genomics and DNA arraybased genotyping of pandemic Staphylococcus aureus strains encoding Panton-Valentine leukocidin
    • Monecke S, Berger-Bachi B, Coombs G et al (2007) Comparative genomics and DNA arraybased genotyping of pandemic Staphylococcus aureus strains encoding Panton-Valentine leukocidin. Clin Microbiol Infect 13:236-249
    • (2007) Clin Microbiol Infect , vol.13 , pp. 236-249
    • Monecke, S.1    Berger-Bachi, B.2    Coombs, G.3
  • 51
    • 15544371286 scopus 로고    scopus 로고
    • Comparison of SYTO9 and SYBR Green i for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis
    • Monis PT, Giglio S, Saint CP (2005) Comparison of SYTO9 and SYBR Green I for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis. Anal Biochem 340:24-34
    • (2005) Anal Biochem , vol.340 , pp. 24-34
    • Monis, P.T.1    Giglio, S.2    Saint, C.P.3
  • 52
    • 28544447393 scopus 로고    scopus 로고
    • Nucleic acid-based methods for the detection of bacterial pathogens: Present and future considerations for the clinical laboratory
    • Mothershed EA, Whitney AM (2006) Nucleic acid-based methods for the detection of bacterial pathogens: present and future considerations for the clinical laboratory. Clin Chim Acta 363:206-220
    • (2006) Clin Chim Acta , vol.363 , pp. 206-220
    • Mothershed, E.A.1    Whitney, A.M.2
  • 53
    • 0027278264 scopus 로고
    • Flagellin gene typing of Campylobacter jejuni by restriction fragment length polymorphism analysis
    • Nachamkin I, Bohachick K, Patton CM (1993) Flagellin gene typing of Campylobacter jejuni by restriction fragment length polymorphism analysis. J Clin Microbiol 31:1531-1536
    • (1993) J Clin Microbiol , vol.31 , pp. 1531-1536
    • Nachamkin, I.1    Bohachick, K.2    Patton, C.M.3
  • 54
    • 0035463476 scopus 로고    scopus 로고
    • The new millennium laboratory: Molecular diagnostics goes clinical
    • Nadder TS, Langley MR (2001) The new millennium laboratory: molecular diagnostics goes clinical. Clin Lab Sci 14:252-259
    • (2001) Clin Lab Sci , vol.14 , pp. 252-259
    • Nadder, T.S.1    Langley, M.R.2
  • 55
    • 41949094441 scopus 로고    scopus 로고
    • Community-associated methicillin-resistant Staphylococcus aureus (MRSA) in Australia
    • Nimmo GR, CoombsGW(2008) Community-associated methicillin-resistant Staphylococcus aureus (MRSA) in Australia. Int J Antimicrob Agents 31:401-410
    • (2008) Int J Antimicrob Agents , vol.31 , pp. 401-410
    • Nimmo, G.R.1    Coombs, G.W.2
  • 56
    • 68549133210 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem-repeat analysis of Salmonella enterica serovar Typhi
    • Octavia S, Lan R (2009) Multiple-locus variable-number tandem-repeat analysis of Salmonella enterica serovar Typhi. J Clin Microbiol 47:2369-2376
    • (2009) J Clin Microbiol , vol.47 , pp. 2369-2376
    • Octavia, S.1    Lan, R.2
  • 57
    • 67849116790 scopus 로고    scopus 로고
    • Pulsed-field gel electrophoresis for molecular epidemiology of food pathogens
    • Peters TM (2009) Pulsed-field gel electrophoresis for molecular epidemiology of food pathogens. Methods Mol Biol 551:59-70
    • (2009) Methods Mol Biol , vol.551 , pp. 59-70
    • Peters, T.M.1
  • 58
    • 0030443332 scopus 로고    scopus 로고
    • RAPD typing in microbiology-a technical review
    • Power EG (1996) RAPD typing in microbiology-a technical review. J Hosp Infect 34: 247-265
    • (1996) J Hosp Infect , vol.34 , pp. 247-265
    • Power, E.G.1
  • 59
    • 33845513534 scopus 로고    scopus 로고
    • Fingerprinting of Campylobacter jejuni by using resolution-optimized binary gene targets derived from comparative genome hybridization studies
    • Price EP, Huygens F, Giffard PM (2006) Fingerprinting of Campylobacter jejuni by using resolution-optimized binary gene targets derived from comparative genome hybridization studies. Appl Environ Microbiol 72:7793-7803
    • (2006) Appl Environ Microbiol , vol.72 , pp. 7793-7803
    • Price, E.P.1    Huygens, F.2    Giffard, P.M.3
  • 60
    • 33747051228 scopus 로고    scopus 로고
    • Genotyping of Campylobacter jejuni using seven single-nucleotide polymorphisms in combination with flaA short variable region sequencing
    • Price EP, Thiruvenkataswamy V, Mickan L et al (2006) Genotyping of Campylobacter jejuni using seven single-nucleotide polymorphisms in combination with flaA short variable region sequencing. J Med Microbiol 55:1061-1070
    • (2006) J Med Microbiol , vol.55 , pp. 1061-1070
    • Price, E.P.1    Thiruvenkataswamy, V.2    Mickan, L.3
  • 61
    • 65249135466 scopus 로고    scopus 로고
    • Development of multiplex PCR assays for detection of enterotoxigenic Escherichia coli colonization factors and toxins
    • Rodas C, Iniguez V, Qadri F, Wiklund G, Svennerholm A-M, Sjöling Å (2009) Development of multiplex PCR assays for detection of enterotoxigenic Escherichia coli colonization factors and toxins. J Clin Microbiol 47:1218-1220
    • (2009) J Clin Microbiol , vol.47 , pp. 1218-1220
    • Rodas, C.1    Iniguez, V.2    Qadri, F.3    Wiklund, G.4    Svennerholm, A.-M.5    Sjöling, Å.6
  • 62
    • 56949106356 scopus 로고    scopus 로고
    • The use of MAPLT and MLVA analyses of phenotypically closely related isolates of Salmonella enterica serovar Typhimurium
    • Ross IL, Parkinson IH, Heuzenroeder MW (2009) The use of MAPLT and MLVA analyses of phenotypically closely related isolates of Salmonella enterica serovar Typhimurium. Int J Med Microbiol 299:37-41
    • (2009) Int J Med Microbiol , vol.299 , pp. 37-41
    • Ross, I.L.1    Parkinson, I.H.2    Heuzenroeder, M.W.3
  • 65
    • 0028911538 scopus 로고
    • Quantitative detection of reverse transcriptase-PCR products by means of a novel and sensitive DNA stain
    • Schneeberger C, Speiser P, Kury F et al (1995) Quantitative detection of reverse transcriptase-PCR products by means of a novel and sensitive DNA stain. PCR Methods Appl 4: 234-238
    • (1995) PCR Methods Appl , vol.4 , pp. 234-238
    • Schneeberger, C.1    Speiser, P.2    Kury, F.3
  • 66
    • 67651108596 scopus 로고    scopus 로고
    • Ongoing revolution in bacteriology: Routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry
    • Seng P, Drancourt M, Gouriet F et al (2009) Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis 49:543-551
    • (2009) Clin Infect Dis , vol.49 , pp. 543-551
    • Seng, P.1    Drancourt, M.2    Gouriet, F.3
  • 67
    • 84900100908 scopus 로고    scopus 로고
    • An introduction to real-time PCR
    • In: Dorak MT (ed) Real-Time PCR, 1st edn
    • Shipley GL (2006) An introduction to real-time PCR. In: Dorak MT (ed) Real-Time PCR, 1st edn. Taylor & Francis, UK
    • (2006) Taylor & Francis, UK
    • Shipley, G.L.1
  • 68
    • 33750837540 scopus 로고    scopus 로고
    • An improved multiple-locus variable number of tandem repeats analysis for Leptospira interrogans serovar Australis: A comparison with fluorescent amplified fragment length polymorphism analysis and its use to redefine the molecular epidemiology of this serovar in Queensland, Australia
    • Slack A, Symonds M, Dohnt M et al (2006) An improved multiple-locus variable number of tandem repeats analysis for Leptospira interrogans serovar Australis: a comparison with fluorescent amplified fragment length polymorphism analysis and its use to redefine the molecular epidemiology of this serovar in Queensland, Australia. J Med Microbiol 55:1549-1557
    • (2006) J Med Microbiol , vol.55 , pp. 1549-1557
    • Slack, A.1    Symonds, M.2    Dohnt, M.3
  • 69
    • 29144484144 scopus 로고    scopus 로고
    • Multiplexed tandem PCR: Gene profiling from small amounts of RNA using SYBR Green detection
    • Stanley K, Szewezuk E (2005) Multiplexed tandem PCR: gene profiling from small amounts of RNA using SYBR Green detection. Nucleic Acids Res 33:e180
    • (2005) Nucleic Acids Res , vol.33
    • Stanley, K.1    Szewezuk, E.2
  • 70
    • 85047670322 scopus 로고
    • A rapid one-tube genomic DNA extraction process for PCR and RAPD analyses
    • Steiner JJ, Poklemba CJ, Fjellstrom RG et al (1995) A rapid one-tube genomic DNA extraction process for PCR and RAPD analyses. Nucleic Acids Res 23:2569-2570
    • (1995) Nucleic Acids Res , vol.23 , pp. 2569-2570
    • Steiner, J.J.1    Poklemba, C.J.2    Fjellstrom, R.G.3
  • 71
    • 34547629067 scopus 로고    scopus 로고
    • Systematic derivation of marker sets for Staphylococcal cassette chromosome mec typing
    • Stephens AJ, Huygens F, Giffard PM (2007) Systematic derivation of marker sets for Staphylococcal cassette chromosome mec typing. Antimicrob Agents Chemother 51:2954-2964
    • (2007) Antimicrob Agents Chemother , vol.51 , pp. 2954-2964
    • Stephens, A.J.1    Huygens, F.2    Giffard, P.M.3
  • 72
    • 29744439183 scopus 로고    scopus 로고
    • Methicillin-resistant Staphylococcus aureus genotyping using a small set of polymorphisms
    • Stephens AJ, Huygens F, Inman-Bamber J et al (2006) Methicillin-resistant Staphylococcus aureus genotyping using a small set of polymorphisms. J Med Microbiol 55:43-51
    • (2006) J Med Microbiol , vol.55 , pp. 43-51
    • Stephens, A.J.1    Huygens, F.2    Inman-Bamber, J.3
  • 73
    • 39749106626 scopus 로고    scopus 로고
    • High-resolution melting analysis of the spa repeat region of Staphylococcus aureus
    • Stephens AJ, Inman-Bamber J, Giffard PM et al (2008) High-resolution melting analysis of the spa repeat region of Staphylococcus aureus. Clin Chem 54:432-436
    • (2008) Clin Chem , vol.54 , pp. 432-436
    • Stephens, A.J.1    Inman-Bamber, J.2    Giffard, P.M.3
  • 74
    • 11144227688 scopus 로고    scopus 로고
    • Rapid genotyping of Pseudomonas aeruginosa isolates harboured by adult and paediatric patients with cystic fibrosis using repetitive-element-based PCR assays
    • Syrmis MW, O'Carroll MR, Sloots TP et al (2004) Rapid genotyping of Pseudomonas aeruginosa isolates harboured by adult and paediatric patients with cystic fibrosis using repetitive-element-based PCR assays. J Med Microbiol 53:1089-1096
    • (2004) J Med Microbiol , vol.53 , pp. 1089-1096
    • Syrmis, M.W.1    O'carroll, M.R.2    Sloots, T.P.3
  • 75
    • 50849143451 scopus 로고    scopus 로고
    • Comparative genomic assessment of multi-locus sequence typing: Rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni
    • Taboada EN, Mackinnon JM, Luebbert CC et al (2008) Comparative genomic assessment of multi-locus sequence typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni. BMC Evol Biol 8:229
    • (2008) BMC Evol Biol , vol.8 , pp. 229
    • Taboada, E.N.1    Mackinnon, J.M.2    Luebbert, C.C.3
  • 76
    • 0029134774 scopus 로고
    • Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: Criteria for bacterial strain typing
    • Tenover FC, Arbeit RD, Goering RV et al (1995) Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol 33:2233-2239
    • (1995) J Clin Microbiol , vol.33 , pp. 2233-2239
    • Tenover, F.C.1    Arbeit, R.D.2    Goering, R.V.3
  • 77
    • 55049125445 scopus 로고    scopus 로고
    • Comparative genomics: The bacterial pan-genome
    • Tettelin H, Riley D, Cattuto C et al (2008) Comparative genomics: the bacterial pan-genome. Curr Opin Microbiol 11:472-477
    • (2008) Curr Opin Microbiol , vol.11 , pp. 472-477
    • Tettelin, H.1    Riley, D.2    Cattuto, C.3
  • 78
    • 70649108562 scopus 로고    scopus 로고
    • High-resolution melting analysis of the spa locus reveals significant diversity within sequence type 93 methicillin-resistant Staphylococcus aureus from northern Australia
    • Tong SY, Lilliebridge RA, Holt DC et al (2009) High-resolution melting analysis of the spa locus reveals significant diversity within sequence type 93 methicillin-resistant Staphylococcus aureus from northern Australia. Clin Microbiol Infect 15:1126-1131
    • (2009) Clin Microbiol Infect , vol.15 , pp. 1126-1131
    • Tong, S.Y.1    Lilliebridge, R.A.2    Holt, D.C.3
  • 79
    • 34247389590 scopus 로고    scopus 로고
    • Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping
    • U'Ren JM, Schupp JM, Pearson T et al (2007) Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping. BMC Microbiol 7:23
    • (2007) BMC Microbiol , vol.7 , pp. 23
    • U'ren, J.M.1    Schupp, J.M.2    Pearson, T.3
  • 80
    • 34548246397 scopus 로고    scopus 로고
    • Guidelines for the validation and application of typing methods for use in bacterial epidemiology
    • van Belkum A, Tassios PT, Dijkshoorn L et al (2007) Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin Microbiol Infect 13 Suppl 3:1-46
    • (2007) Clin Microbiol Infect , vol.13 , Issue.SUPPL. 3 , pp. 1-46
    • Van Belkum, A.1    Tassios, P.T.2    Dijkshoorn, L.3
  • 81
    • 33748784911 scopus 로고    scopus 로고
    • Highly effective detection of human papillomavirus 16 and 18 DNA by a testing algorithm combining broad-spectrum and type-specific PCR
    • van Doorn L-J, Moljin A, Kleter B, Quint W, Colau B (2006) Highly effective detection of human papillomavirus 16 and 18 DNA by a testing algorithm combining broad-spectrum and type-specific PCR. J Clin Microbiol 44:3292-3298
    • (2006) J Clin Microbiol , vol.44 , pp. 3292-3298
    • Van Doorn, L.-J.1    Moljin, A.2    Kleter, B.3    Quint, W.4    Colau, B.5
  • 82
    • 35348921837 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandemrepeat analysis for longitudinal survey of sources of Pseudomonas aeruginosa infection in cystic fibrosis patients
    • Vu-Thien H, Corbineau G, Hormigos K et al (2007) Multiple-locus variable-number tandemrepeat analysis for longitudinal survey of sources of Pseudomonas aeruginosa infection in cystic fibrosis patients. J Clin Microbiol 45:3175-3183
    • (2007) J Clin Microbiol , vol.45 , pp. 3175-3183
    • Vu-Thien, H.1    Corbineau, G.2    Hormigos, K.3
  • 83
    • 77950526079 scopus 로고    scopus 로고
    • Green technologies for room temperature nucleic acid storage
    • Wan E, Akana M, Pons J et al (2010) Green technologies for room temperature nucleic acid storage. Curr Issues Mol Biol 12:135-142
    • (2010) Curr Issues Mol Biol , vol.12 , pp. 135-142
    • Wan, E.1    Akana, M.2    Pons, J.3
  • 84
    • 67349120688 scopus 로고    scopus 로고
    • Current applications and future trends of molecular diagnostics in clinical bacteriology
    • Weile J, Knabbe C (2009) Current applications and future trends of molecular diagnostics in clinical bacteriology. Anal Bioanal Chem 394:731-742
    • (2009) Anal Bioanal Chem , vol.394 , pp. 731-742
    • Weile, J.1    Knabbe, C.2
  • 85
    • 77449149699 scopus 로고    scopus 로고
    • Neisseria gonorrhoeae multi-antigen sequence typing using non-cultured clinical specimens
    • Whiley DM, Goire N, Ray ES et al (2010) Neisseria gonorrhoeae multi-antigen sequence typing using non-cultured clinical specimens. Sex Transm Infect 86:51-55
    • (2010) Sex Transm Infect , vol.86 , pp. 51-55
    • Whiley, D.M.1    Goire, N.2    Ray, E.S.3
  • 86
    • 1842556675 scopus 로고    scopus 로고
    • Detection and differentiation of herpes simplex virus types 1 and 2 by a duplex LightCycler PCR that incorporates an internal control PCR reaction
    • Whiley DM, Mackay IM, Syrmis MW et al (2004) Detection and differentiation of herpes simplex virus types 1 and 2 by a duplex LightCycler PCR that incorporates an internal control PCR reaction. J Clin Virol 30:32-38
    • (2004) J Clin Virol , vol.30 , pp. 32-38
    • Whiley, D.M.1    Mackay, I.M.2    Syrmis, M.W.3
  • 87
    • 24644515414 scopus 로고    scopus 로고
    • Sequence variation in primer targets affects the accuracy of viral quantitative PCR
    • Whiley DM, Sloots TP (2005) Sequence variation in primer targets affects the accuracy of viral quantitative PCR. J Clin Virol 34:104-107
    • (2005) J Clin Virol , vol.34 , pp. 104-107
    • Whiley, D.M.1    Sloots, T.P.2
  • 88
    • 29644434578 scopus 로고    scopus 로고
    • Sequence variation can affect the performance of minor groove binder TaqMan probes in viral diagnostic assays
    • Whiley DM, Sloots TP (2006) Sequence variation can affect the performance of minor groove binder TaqMan probes in viral diagnostic assays. J Clin Virol 35:81-83
    • (2006) J Clin Virol , vol.35 , pp. 81-83
    • Whiley, D.M.1    Sloots, T.P.2
  • 89
    • 73349110129 scopus 로고    scopus 로고
    • Analysis of the pan genome of Campylobacter jejuni isolates recovered from poultry by pulsed-field gel electrophoresis, multilocus sequence typing (MLST), and repetitive sequence polymerase chain reaction (rep-PCR) reveals different discriminatory capabilities
    • Wilson MK, Lane AB, Law BF et al (2009) Analysis of the pan genome of Campylobacter jejuni isolates recovered from poultry by pulsed-field gel electrophoresis, multilocus sequence typing (MLST), and repetitive sequence polymerase chain reaction (rep-PCR) reveals different discriminatory capabilities. Microb Ecol 58:843-855
    • (2009) Microb Ecol , vol.58 , pp. 843-855
    • Wilson, M.K.1    Lane, A.B.2    Law, B.F.3
  • 90
    • 66349095408 scopus 로고    scopus 로고
    • High-resolution DNA melting analysis: Advancements and limitations
    • Wittwer CT (2009) High-resolution DNA melting analysis: advancements and limitations. Hum Mutat 30:857-859
    • (2009) Hum Mutat , vol.30 , pp. 857-859
    • Wittwer, C.T.1
  • 91
    • 0031022694 scopus 로고    scopus 로고
    • Continuous fluorescence monitoring of rapid cycle DNA amplification
    • 134-138
    • Wittwer CT, Herrmann MG, Moss AA et al (1997) Continuous fluorescence monitoring of rapid cycle DNA amplification. Biotechniques 22:130-131, 134-138
    • (1997) Biotechniques , vol.22 , pp. 130-131
    • Wittwer, C.T.1    Herrmann, M.G.2    Moss, A.A.3
  • 92
    • 53749101695 scopus 로고    scopus 로고
    • An enhanced discriminatory pulsed-field gel electrophoresis scheme for subtyping Salmonella serotypes Heidelberg, Kentucky, SaintPaul, and Hadar
    • Xi M, Zheng J, Zhao S et al (2008) An enhanced discriminatory pulsed-field gel electrophoresis scheme for subtyping Salmonella serotypes Heidelberg, Kentucky, SaintPaul, and Hadar. J Food Prot 71:2067-2072
    • (2008) J Food Prot , vol.71 , pp. 2067-2072
    • Xi, M.1    Zheng, J.2    Zhao, S.3
  • 93
    • 67449110092 scopus 로고    scopus 로고
    • Comparative whole-genome analysis of Streptococcus mutans isolates within and among individuals of different caries status
    • Zhang L, Foxman B, Drake DR et al (2009) Comparative whole-genome analysis of Streptococcus mutans isolates within and among individuals of different caries status. Oral Microbiol Immunol 24:197-203
    • (2009) Oral Microbiol Immunol , vol.24 , pp. 197-203
    • Zhang, L.1    Foxman, B.2    Drake, D.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.