메뉴 건너뛰기




Volumn 8, Issue , 2008, Pages

Fluorescent-BOX-PCR for resolving bacterial genetic diversity, endemism and biogeography

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM; BACTERIUM IDENTIFICATION; CAPILLARY ELECTROPHORESIS; CLASSIFICATION; EVALUATION; FLUORESCENCE; GENETIC VARIABILITY; GENETICS; GEORGIA (REPUBLIC); ISOLATION AND PURIFICATION; ITALY; METHODOLOGY; MICROBIOLOGY; PHYLOGENY; POLYMERASE CHAIN REACTION;

EID: 58249100086     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-8-220     Document Type: Article
Times cited : (30)

References (36)
  • 1
    • 0037337209 scopus 로고    scopus 로고
    • Comparison of ribotyping and Repetitive Extragenic Palindromic-PCR for identification of fecal Escherichia coli from humans and animals
    • 12620878. 10.1128/AEM.69.3.1836-1839.2003
    • Comparison of ribotyping and Repetitive Extragenic Palindromic-PCR for identification of fecal Escherichia coli from humans and animals. CA Carson BL Shear MR Ellersieck JD Schnell, Appl Environ Microbiol 2003 69 1836 1839 12620878 10.1128/AEM.69.3.1836-1839.2003
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1836-1839
    • Carson, C.A.1    Shear, B.L.2    Ellersieck, M.R.3    Schnell, J.D.4
  • 3
    • 33646117511 scopus 로고    scopus 로고
    • Bacillus endospores isolated from granite: Close molecular relationships to globally distributed Bacillus spp. from endolithic and extreme environments
    • 16597992. 10.1128/AEM.72.4.2856-2863.2006
    • Bacillus endospores isolated from granite: close molecular relationships to globally distributed Bacillus spp. from endolithic and extreme environments. P Fajardo-Cavazos W Nicholson, Appl Environ Microbiol 2006 72 2856 2863 16597992 10.1128/AEM.72.4.2856-2863.2006
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2856-2863
    • Fajardo-Cavazos, P.1    Nicholson, W.2
  • 4
    • 0038558615 scopus 로고    scopus 로고
    • Cyanobacterial ecotypes in different optical microenvironments of a 68 degrees C hot spring mat community revealed by 16S-23S rRNA internal transcribed spacer region variation
    • 12732563. 10.1128/AEM.69.5.2893-2898.2003
    • Cyanobacterial ecotypes in different optical microenvironments of a 68 degrees C hot spring mat community revealed by 16S-23S rRNA internal transcribed spacer region variation. MJ Ferris M Kuhl A Wieland DM Ward, Appl Environ Microbiol 2003 69 2893 2898 12732563 10.1128/AEM.69.5.2893-2898.2003
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2893-2898
    • Ferris, M.J.1    Kuhl, M.2    Wieland, A.3    Ward, D.M.4
  • 5
    • 0141705458 scopus 로고    scopus 로고
    • Biogeography of the purple nonsulfur bacterium Rhodopseudomonas palustris
    • 12957900. 10.1128/AEM.69.9.5186-5191.2003
    • Biogeography of the purple nonsulfur bacterium Rhodopseudomonas palustris. Y Oda B Star LA Huisman JC Gottschal LJ Forney, Appl Environ Microbiol 2003 69 5186 5191 12957900 10.1128/AEM.69.9.5186-5191.2003
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5186-5191
    • Oda, Y.1    Star, B.2    Huisman, L.A.3    Gottschal, J.C.4    Forney, L.J.5
  • 6
    • 0141482152 scopus 로고    scopus 로고
    • Spatial distribution of Rhodopseudomonas palustris ecotypes on a local scale
    • 12957901. 10.1128/AEM.69.9.5192-5197.2003
    • Spatial distribution of Rhodopseudomonas palustris ecotypes on a local scale. SJ Bent CL Gucker Y Oda LJ Forney, Appl Environ Microbiol 2003 69 5192 5197 12957901 10.1128/AEM.69.9.5192-5197.2003
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5192-5197
    • Bent, S.J.1    Gucker, C.L.2    Oda, Y.3    Forney, L.J.4
  • 7
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
    • 1762913. 10.1093/nar/19.24.6823
    • Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. J Versalovic T Koeuth JR Lupski, Nucleic Acids Res 1991 19 6823 6831 1762913 10.1093/nar/19.24.6823
    • (1991) Nucleic Acids Res , vol.19 , pp. 6823-6831
    • Versalovic, J.1    Koeuth, T.2    Lupski, J.R.3
  • 8
    • 0027992990 scopus 로고
    • Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction
    • Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. J Versalovic M Schneider FJ De Bruijn JR Lupski, Methods Mol Cell Biol 1994 5 25 40
    • (1994) Methods Mol Cell Biol , vol.5 , pp. 25-40
    • Versalovic, J.1    Schneider, M.2    De Bruijn, F.J.3    Lupski, J.R.4
  • 9
    • 0029561626 scopus 로고
    • Differential subsequence conservation of interspersed repetitive Streptococcus pneumoniae BOX elements in diverse bacteria
    • 10.1101/gr.5.4.408. 8750201
    • Differential subsequence conservation of interspersed repetitive Streptococcus pneumoniae BOX elements in diverse bacteria. T Koeuth J Versalovic JR Lupski, Genome Res 1995 5 408 418 10.1101/gr.5.4.408 8750201
    • (1995) Genome Res , vol.5 , pp. 408-418
    • Koeuth, T.1    Versalovic, J.2    Lupski, J.R.3
  • 12
    • 0036091683 scopus 로고    scopus 로고
    • Comparison of ITS profiling, REP- and ERIC-PCR of Salmonella enteritidis isolates from Poland
    • 10.1046/j.1439-0450.2002.00544.x
    • Comparison of ITS profiling, REP- and ERIC-PCR of Salmonella enteritidis isolates from Poland. R Chmielewski A Wieliczko M Kuczkowski M Mazurkiewicz M Ugorski, J Vet Med 2002 49 163 168 10.1046/j.1439-0450.2002.00544.x
    • (2002) J Vet Med , vol.49 , pp. 163-168
    • Chmielewski, R.1    Wieliczko, A.2    Kuczkowski, M.3    Mazurkiewicz, M.4    Ugorski, M.5
  • 13
    • 0030904848 scopus 로고    scopus 로고
    • Evaluation of the resolving power of three different DNA fingerprinting methods to discriminate among isolates of a natural Rhizobium meliloti population
    • 10.1046/j.1365-2672.1997.00141.x. 9134721
    • Evaluation of the resolving power of three different DNA fingerprinting methods to discriminate among isolates of a natural Rhizobium meliloti population. S Niemann A Pühler HV Ticky R Simon W Selbitschka, J Appl Microbiol 1997 82 477 484 10.1046/j.1365-2672.1997.00141.x 9134721
    • (1997) J Appl Microbiol , vol.82 , pp. 477-484
    • Niemann, S.1    Pühler, A.2    Ticky, H.V.3    Simon, R.4    Selbitschka, W.5
  • 14
    • 0032904916 scopus 로고    scopus 로고
    • Principles and applications of methods for DNA-based typing of microbial organisms
    • 10325304
    • Principles and applications of methods for DNA-based typing of microbial organisms. DM Olive P Bean, J Clin Microbiol 1999 37 1661 1669 10325304
    • (1999) J Clin Microbiol , vol.37 , pp. 1661-1669
    • Olive, D.M.1    Bean, P.2
  • 15
    • 0037842775 scopus 로고    scopus 로고
    • Stability of repetitive-sequence PCR patterns with respect to culture age and subculture frequency
    • 12791907. 10.1128/JCM.41.6.2694-2696.2003
    • Stability of repetitive-sequence PCR patterns with respect to culture age and subculture frequency. HP Kang WM Dunne, J Clin Microbiol 2003 41 2694 2696 12791907 10.1128/JCM.41.6.2694-2696.2003
    • (2003) J Clin Microbiol , vol.41 , pp. 2694-2696
    • Kang, H.P.1    Dunne, W.M.2
  • 16
    • 0032805795 scopus 로고    scopus 로고
    • Identification of bacterial rep-PCR genomic fingerprints using a backpropagation neural network
    • 10.1111/j.1574-6968.1999.tb13740.x
    • Identification of bacterial rep-PCR genomic fingerprints using a backpropagation neural network. F Ni Tuang JLW Rademaker EC Alocilja FJ Louws FJ de Bruijn, FEMS Microbiol Lett 1999 177 249 256 10.1111/j.1574-6968.1999. tb13740.x
    • (1999) FEMS Microbiol Lett , vol.177 , pp. 249-256
    • Ni Tuang, F.1    Rademaker, J.L.W.2    Alocilja, E.C.3    Louws, F.J.4    De Bruijn, F.J.5
  • 17
    • 0038696191 scopus 로고    scopus 로고
    • Genetic relationship in the "bacillus cereus group" by rep-PCR fingerprinting and sequencing of a Bacillus anthracis-specific rep-PCR fragment
    • 10.1046/j.1365-2672.2003.01945.x. 12752821
    • Genetic relationship in the "Bacillus cereus group" by rep-PCR fingerprinting and sequencing of a Bacillus anthracis-specific rep-PCR fragment. A Cherif L Brusetti S Borin A Rizzi A Boudabous H Khyami-Horani D Daffonchio, J Appl Microbiol 2003 94 1108 1119 10.1046/j.1365-2672.2003.01945.x 12752821
    • (2003) J Appl Microbiol , vol.94 , pp. 1108-1119
    • Cherif, A.1    Brusetti, L.2    Borin, S.3    Rizzi, A.4    Boudabous, A.5    Khyami-Horani, H.6    Daffonchio, D.7
  • 18
    • 0034130242 scopus 로고    scopus 로고
    • Use of repetitive DNA sequences and the PCR to differentiate Escherichia coli isolates from human and animal sources
    • 10831440. 10.1128/AEM.66.6.2572-2577.2000
    • Use of repetitive DNA sequences and the PCR to differentiate Escherichia coli isolates from human and animal sources. PE Dombek LK Johnson ST Zimmerley MJ Sadowsky, Appl Environ Microbiol 2000 66 2572 2577 10831440 10.1128/AEM.66.6.2572-2577.2000
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2572-2577
    • Dombek, P.E.1    Johnson, L.K.2    Zimmerley, S.T.3    Sadowsky, M.J.4
  • 19
    • 0036307715 scopus 로고    scopus 로고
    • Differential ability of genotypes of 2,4-diacetylphloroglucinol-producing Pseudomonas fluorescens strains to colonize the roots of pea plants
    • 12088998. 10.1128/AEM.68.7.3226-3237.2002
    • Differential ability of genotypes of 2,4-diacetylphloroglucinol-producing Pseudomonas fluorescens strains to colonize the roots of pea plants. BB Landa OV Mavrodi JM Raaijmakers BB McSpadden Gardener LS Thomashow DM Weller, Appl Environ Microbiol 2002 68 3226 3237 12088998 10.1128/AEM.68.7.3226-3237.2002
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3226-3237
    • Landa, B.B.1    Mavrodi, O.V.2    Raaijmakers, J.M.3    McSpadden Gardener, B.B.4    Thomashow, L.S.5    Weller, D.M.6
  • 20
    • 0035146335 scopus 로고    scopus 로고
    • Molecular analysis of Vibrio cholerae O1, O139, non-O1, and non-O139 strains: Clonal relationship between clinical and environmental isolates
    • 11157262. 10.1128/AEM.67.2.910-921.2001
    • Molecular analysis of Vibrio cholerae O1, O139, non-O1, and non-O139 strains: clonal relationship between clinical and environmental isolates. DV Singh MH Matte GR Matte S Jiang F Sabeena BN Shukla SC Sanyal A Huq RR Colwell, Appl Environ Microbiol 2001 67 910 921 11157262 10.1128/AEM.67.2.910-921.2001
    • (2001) Appl Environ Microbiol , vol.67 , pp. 910-921
    • Singh, D.V.1    Matte, M.H.2    Matte, G.R.3    Jiang, S.4    Sabeena, F.5    Shukla, B.N.6    Sanyal, S.C.7    Huq, A.8    Colwell, R.R.9
  • 21
  • 23
    • 0035210325 scopus 로고    scopus 로고
    • Biodiversity of Geodermatophilaceae isolated from altered stones and monuments in the Mediterranean basin
    • 10.1046/j.1462-2920.2001.00217.x. 11553237
    • Biodiversity of Geodermatophilaceae isolated from altered stones and monuments in the Mediterranean basin. C Urzì L Brusetti P Salamone C Sorlini E Stackebrandt D Daffonchio, Environ Microbiol 2001 3 471 479 10.1046/j.1462-2920.2001.00217.x 11553237
    • (2001) Environ Microbiol , vol.3 , pp. 471-479
    • Urzì, C.1    Brusetti, L.2    Salamone, P.3    Sorlini, C.4    Stackebrandt, E.5    Daffonchio, D.6
  • 24
    • 33846172945 scopus 로고    scopus 로고
    • Identification of the lactic acid bacterial cultures isolated from the samples of the caucasian Matsoni
    • Identification of the lactic acid bacterial cultures isolated from the samples of the caucasian Matsoni. N Chanishvili, Proc Georgian Acad Sci Biol Ser 2001 27 91 95
    • (2001) Proc Georgian Acad Sci Biol Ser , vol.27 , pp. 91-95
    • Chanishvili, N.1
  • 25
    • 23744493882 scopus 로고    scopus 로고
    • Fluorophore-labelled primers improve the sensitivity, versatility, and normalization of denaturing gradient gel electrophoresis
    • 16085891. 10.1128/AEM.71.8.4893-4896.2005
    • Fluorophore-labelled primers improve the sensitivity, versatility, and normalization of denaturing gradient gel electrophoresis. JD Neufeld WW Mohn, Appl Environ Microbiol 2005 71 4893 4896 16085891 10.1128/AEM.71.8.4893-4896. 2005
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4893-4896
    • Neufeld, J.D.1    Mohn, W.W.2
  • 26
    • 0035489392 scopus 로고    scopus 로고
    • Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: Biological and methodological variability
    • 11571146. 10.1128/AEM.67.10.4479-4487.2001
    • Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability. L Ranjard F Poly JC Lata C Mougel J Thioulouse S Nazaret, Appl Environ Microbiol 2001 67 4479 4487 11571146 10.1128/AEM.67.10.4479-4487.2001
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4479-4487
    • Ranjard, L.1    Poly, F.2    Lata, J.C.3    Mougel, C.4    Thioulouse, J.5    Nazaret, S.6
  • 27
    • 2942556578 scopus 로고    scopus 로고
    • Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia
    • 15184140. 10.1128/AEM.70.6.3425-3433.2004
    • Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia. I Hewson JA Fuhrman, Appl Environ Microbiol 2004 70 3425 3433 15184140 10.1128/AEM.70.6.3425-3433.2004
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3425-3433
    • Hewson, I.1    Fuhrman, J.A.2
  • 28
    • 42149136388 scopus 로고    scopus 로고
    • Selection of yoghurt starter culture from indigenous isolates of Streptococcus thermophilus and Lactobacillus delbrueckii subsp. bulgaricus on the basis of technological properties
    • Selection of yoghurt starter culture from indigenous isolates of Streptococcus thermophilus and Lactobacillus delbrueckii subsp. bulgaricus on the basis of technological properties. AH Soomro T Masud, Ann Microbiol 2008 58 67 71
    • (2008) Ann Microbiol , vol.58 , pp. 67-71
    • Soomro, A.H.1    Masud, T.2
  • 29
    • 42149163610 scopus 로고    scopus 로고
    • Comparative analysis of Lactococcus lactis bacteriocins and preliminary characterisation of a new proteinase K resistant lactococcin member
    • Comparative analysis of Lactococcus lactis bacteriocins and preliminary characterisation of a new proteinase K resistant lactococcin member. H Ouzari A Najjari H Amairi M Gtari A Hassen A Boudabous, Ann Microbiol 2008 58 83 88
    • (2008) Ann Microbiol , vol.58 , pp. 83-88
    • Ouzari, H.1    Najjari, A.2    Amairi, H.3    Gtari, M.4    Hassen, A.5    Boudabous, A.6
  • 30
    • 33645017452 scopus 로고    scopus 로고
    • Usefulness of length heterogeneity-PCR for monitoring lactic acid bacteria succession during maize ensiling
    • 10.1111/j.1574-6941.2005.00059.x. 16542413
    • Usefulness of length heterogeneity-PCR for monitoring lactic acid bacteria succession during maize ensiling. L Brusetti S Borin D Mora A Rizzi N Raddadi C Sorlini D Daffonchio, FEMS Microbiol Ecol 2006 56 154 164 10.1111/j.1574-6941.2005.00059.x 16542413
    • (2006) FEMS Microbiol Ecol , vol.56 , pp. 154-164
    • Brusetti, L.1    Borin, S.2    Mora, D.3    Rizzi, A.4    Raddadi, N.5    Sorlini, C.6    Daffonchio, D.7
  • 31
    • 1542299660 scopus 로고    scopus 로고
    • Evaluation of bacterial communities belonging to natural whey starters for Grana Padano cheese by length heterogeneity-PCR
    • 10.1111/j.1365-2672.2004.02180.x
    • Evaluation of bacterial communities belonging to natural whey starters for Grana Padano cheese by length heterogeneity-PCR. C Lazzi L Rossetti M Zago E Neviani G Giraffa, J Appl Microbiol 2004 94 481 490 10.1111/j.1365-2672.2004. 02180.x
    • (2004) J Appl Microbiol , vol.94 , pp. 481-490
    • Lazzi, C.1    Rossetti, L.2    Zago, M.3    Neviani, E.4    Giraffa, G.5
  • 34
    • 0034466660 scopus 로고    scopus 로고
    • Homoduplex and heteroduplex polymorphisms of the amplified ribosomal 16S-23S internal transcribed spacers describe genetic relationships in the "bacillus cereus group"
    • 11097928. 10.1128/AEM.66.12.5460-5468.2000
    • Homoduplex and heteroduplex polymorphisms of the amplified ribosomal 16S-23S internal transcribed spacers describe genetic relationships in the "Bacillus cereus group". D Daffonchio A Cherif S Borin, Appl Environ Microbiol 2000 66 5460 5468 11097928 10.1128/AEM.66.12.5460-5468.2000
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5460-5468
    • Daffonchio, D.1    Cherif, A.2    Borin, S.3
  • 35
    • 34748886657 scopus 로고    scopus 로고
    • PAST: Paleontological Statistics Software Package for Education and Data Analysis
    • PAST: Paleontological Statistics Software Package for Education and Data Analysis. Ø Hammer DAT Harper PJ Ryan, Palaeontologia Electronica 2001 4 1 9
    • (2001) Palaeontologia Electronica , vol.4 , pp. 1-9
    • Hammer, Ø.1    Harper, D.A.T.2    Ryan, P.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.