Differentiation of mycoplasma gallisepticum strains using PCR and high-resolution melting curve analysis

Microbiology

Volumn 156, Issue 4, 2010, Pages 1019-1029

  Ghorashi, Seyed A ^a   Noormohammadi, Amir H ^a   Markham, Philip F ^a  

^a UNIVERSITY OF MELBOURNE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

OLIGONUCLEOTIDE; TRINUCLEOTIDE;

AMPLICON; ANALYTIC METHOD; ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; DNA SEQUENCE; GENOTYPE; MELTING CURVE ANALYSIS; MYCOPLASMA; MYCOPLASMA GALLISEPTICUM; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; STRAIN DIFFERENCE; TRINUCLEOTIDE REPEAT;

BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; BASE SEQUENCE; DNA PRIMERS; MOLECULAR SEQUENCE DATA; MYCOPLASMA GALLISEPTICUM; POLYMERASE CHAIN REACTION; TRANSITION TEMPERATURE;

GALLUS GALLUS; MYCOPLASMA; MYCOPLASMA GALLISEPTICUM;

EID: 77950687946     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.031351-0     Document Type: Article

References (36)

1. Adler, H. E., Yamamoto, R. & Berg, J. (1957). Strain differences of pleuropneumonialike organisms of avian origin. Avian Dis 1, 19-27.
2. Baseggio, N., Glew, M. D., Markham, P. F., Whithear, K. G. & Browning, G. F. (1996). Size and genomic location of the pMGA multigene family of Mycoplasma gallisepticum. Microbiology 142, 1429-1435.
3. Callison, S. A., Riblet, S. M., Sun, S., Ikuta, N., Hilt, D., Leiting, V., Kleven, S. H., Suarez, D. L. & Garcia, M. (2006). Development and validation of a real-time Taqman polymerase chain reaction assay for the detection of Mycoplasma gallisepticum in naturally infected birds. Avian Dis 50, 537-544. (Pubitemid 46127329)
4. Carpenter, T. E., Miller, K. F., Gentry, R. F., Schwartz, L. D. & Mallinson, E. T. (1979). Control of Mycoplasma gallisepticum in commercial laying chickens using artificial exposure to Connecticut F strain Mycoplasma gallisepticum. Proc Annu Meet U S Anim Health Assoc 83, 364-370.
5. Cherry, J. J., Ley, D. H. & Altizer, S. (2006). Genotypic analyses of Mycoplasma gallisepticum isolates from songbirds by random amplification of polymorphic DNA and amplified-fragment length polymorphism. J Wildl Dis 42, 421-428.
6. Evans, R. D. & Hafez, Y. S. (1992). Evaluation of a Mycoplasma gallisepticum strain exhibiting reduced virulence for prevention and control of poultry mycoplasmosis. Avian Dis 36, 197-201.
7. Evans, J. D. & Leigh, S. A. (2008). Differentiation of Mycoplasma gallisepticum. vaccine strains ts-11 and 6/85 from commonly used Mycoplasma gallisepticum challenge strains by PCR. Avian Dis 52, 491-497.
8. Feberwee, A., Dijkstra, J. R., von Banniseht-Wysmuller, T. E., Gielkens, A. L. & Wagenaar, J. A. (2005a). Genotyping of Mycoplasma gallisepticum and M. synoviae by amplified fragment length polymorphism (AFLP) analysis and digitalized random amplified polymorphic DNA (RAPD) analysis. Vet Microbiol 111, 125-131. (Pubitemid 41578949)
9. Feberwee,A.,Mekkes,D.R.,deWitJ.J.,Hartman,E.G.&Pijpers,A.(2005b). Comparisonofculture,PCR, anddifferentserologictestsfordetectionofMycoplasmagallisepticum. andMycoplasmasynoviaeinfections.AvianDis49,260-268.(Pubitemid40728414)
10. Felsenstein, J. (1989). Mathematics vs. evolution: mathematical evolutionary theory. Science 246, 941-942.
11. Ferguson, N. M., Hepp, D., Sun, S., Ikuta, N., Levisohn, S-, Kleven, S. H. & Garcia, M. (2005). Use of molecular diversity of Mycoplasma gallisepticum. by gene-targeted sequencing (GTS) and random amplified polymorphic DNA (RAPD) analysis for epidemiological studies. Microbiology 151, 1883-1893. (Pubitemid 40909031)
12. Geary, S. J-, Forsyth, M. H., Aboul Saoud, S., Wang, G., Berg, D. E. & Berg, C. M. (1994). Mycoplasma gallisepticum strain differentiation by arbitrary primer PCR (RAPD) fingerprinting. Mol Cell Probes 8, 311-316. (Pubitemid 24324602)
13. Grodio, J. L, Dhondt K. V., O'Connell, P. H. & Schat, K. A. (2008). Detection and quantification of Mycoplasma gallisepticum genome load in conjunctival samples of experimentally infected house finches (Carpodacus mexicanus) using real-time polymerase chain reaction. Avian Pathol 37, 385-391.
14. Hess, M., Neubauer, C. & Hackl, R. (2007). Interlaboratory comparison of ability to detect nucleic acid of Mycoplasma gallisepticum. and Mycoplasma synoviae by polymerase chain reaction. Avian Pathol 36, 127-133. (Pubitemid 46713349)
15. Hewson, K., Noormohammadi, A. H., Devlin, J. M., Mardani, K. & Ignjatovic, J. (2009). Rapid detection and non-subjective characterisation of infectious bronchitis virus isolates using high-resolution melt curve analysis and a mathematical model. Arch Virol 154, 649-660.
16. Hong,Y.,Garcia,M.,Levisohn,S.,Savelkoul,P.,Leiting,V.,Lysnyansky,I.,Ley, D.H.&Kleven,S.H.(2005). DifferentiationofMycoplasmagallisepticumstrainsusingamplifiedfragmentlength polymorphismandotherDNA-basedtypingmethods.AvianDis49,43-49.(Pubitemid40383824)
17. Jeffery, N., Gasser, R. B., Steer, P. A. & Noormohammadi, A. H. (2007). Classification of Mycoplasma synoviae strains using singlestrand conformation polymorphism and high-resolution meltingcurve analysis of the vlhA gene single-copy region. Microbiology 153, 2679-2688. (Pubitemid 47262057)
18. Khan, M. I. & Yamamoto, R. (1989). Differentiation of the vaccine F-strain from other strains of Mycoplasma gallisepticum by restriction endonuclease analysis. Vet Microbiol 19, 167-174.
19. Kiss, I., Matiz, K., Kaszanyitzky, E., Chavez, Y. & Johansson, K. E. (1997). Detection and identification of avian mycoplasmas by polymerase chain reaction and restriction fragment length polymorphism assay. Vet Microbiol 58, 23-30. (Pubitemid 28010094)
20. Kleven, S. H., Browning, G. F., Bulach, D. M., Ghiocas, E., Morrow, C. J. & Whithear, K. G. (1988a). Examination of Mycoplasma gallisepticum strains using restriction endonuclease DNA analysis and DNA-DNA hybridisation. Avian Pathol 17, 559-570.
21. Kleven, S. H., Morrow, C. J. & Whithear, K. G. (1988b). Comparison of Mycoplasma gallisepticum strains by hemagglutination-inhibition and restriction endonuclease analysis. Avian Dis 32, 731-741.
22. Ley, D. L. (2008). Mycoplasma gallisepticum infection. In Diseases of Poultry, pp. 807-834. Edited by Y. M. Saif, A. M. Fadly, J. R. Glisson, L. R. McDougald, L. K. Nolan & D. E. Swayne. Ames, IA: Blackwell.
23. Lysnyansky,I.,Garcia,M.&Levisohn,S.(2005). Useofmgc2polymerasechainreaction- restrictionfragmentlengthpolymorphismforrapiddifferentiationbetweenfieldisola tesandvaccinestrainsofMycoplasmagallisepticuminIsrael.AvianDis49,238-245. (Pubitemid40728411)
24. Lysnyansky, I., Gerchman, I., Perk, S. & Levisohn, S. (2008). Molecular characterization and typing of enrofloxacin-resistant clinical isolates of Mycoplasma gallisepticum. Avian Dis 52, 685-689.
25. Marois, C., Dufour-Gesbert, F. & Kempf, I. (2001). Molecular differentiation of Mycoplasma gallisepticum and Mycoplasma imitans strains by pulsed-field gel electrophoresis and random amplified polymorphic DNA. J Vet Med B Infect Dis Vet Public Health 48, 695-703. (Pubitemid 33146085)
26. Mettifogo, E., Buzinhani, M., Buim, M. R., Piantino Ferreira, A. J., Kleven, S. H. & Timenetsky, J. (2006). Molecular characterization of MG isolates using RAPD and PFGE isolated from chickens in Brazil. J Vet Med B Infect Dis Vet Public Health 53, 445-450. (Pubitemid 44630255)
27. Morrow,C.J.,Markham,J.F.&Whithear,K.G.(1998).Productionoftemperature- sensitiveclonesofMycoplasmasynoviaeforevaluationaslivevaccines.AvianDis42, 667-670.(Pubitemid29025812)
28. Nascimento, E. R., Yamamoto, R., Herrick, K. R. & Tait, R. C. (1991). Polymerase chain reaction for detection of Mycoplasma gallisepticum. Avian Dis 35, 62-69.
29. Papazisi,L,Gorton,T.S.,Kutish,G.,Markham,P.F.,Browning,G.F.,Nguyen,D.K., Swartzell,S.,Madan,A.,Mahairas,G.&Geary,S.J.(2003). ThecompletegenomesequenceoftheavianpathogenMycoplasmagallisepticumstrainR(low). Microbiology149,2307-2316.(Pubitemid37160708)
30. Raviv, Z., Callison, S., Ferguson-Noel, N., Laibinis, V., Wooten, R. & Kleven, S. H. (2007). The Mycoplasma gallisepticum 16S-23S rRNA intergenic spacer region sequence as a novel tool for epizootiological studies. Avian Dis 51, 555-560. (Pubitemid 46878704)
31. Raviv, Z., Callison, S. A., Ferguson-Noel, N. & Kleven, S. H. (2008). Strain differentiating real-time PCR for Mycoplasma gallisepticum live vaccine evaluation studies. Vet Microbiol 129, 179-187.
32. Reed, G. H., Kent, J. O. Wittwer, C. T. (2007). High-resolution DNA melting analysis for simple and efficient molecular diagnostics. Pharmacogenomics 8, 597-608. (Pubitemid 46939585)
33. Soeripto, Whithear, K. G., Cottew, G. S. & Harrigan, K. E. (1989). Virulence and transmissibility of Mycoplasma gallisepticum. Aust Vet J 66, 65-72.
34. Steer, P. A., Kirkpatrick, N. C., O'Rourke, D. & Noormohammadi, A. H. (2009). Classification of fowl adenovirus serotypes by use of high-resolution melting-curve analysis of the hexon gene region. J Clin Microbiol 47, 311-321.
35. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
36. Whithear, K. G., Soeripto, Harringan, K. E. & Ghiocas, E. (1990). Safety of temperature sensitive mutant Mycoplasma gallisepticum vaccine. Aust Vet J 67, 159-165.