-
1
-
-
19344372271
-
Systems biology: its practice and challenges
-
Aderem A (2005) Systems biology: its practice and challenges. Cell 121: 511-513.
-
(2005)
Cell
, vol.121
, pp. 511-513
-
-
Aderem, A.1
-
3
-
-
84976855597
-
Solution of the matrix equation ax+xb=c
-
Bartels RH, Stewart GW (1972) Solution of the matrix equation ax+xb=c. Commun ACM 15(9): 820-826.
-
(1972)
Commun ACM
, vol.15
, Issue.9
, pp. 820-826
-
-
Bartels, R.H.1
Stewart, G.W.2
-
4
-
-
59749104367
-
From sparse solutions of systems of equations to sparse modeling of signals and images
-
Bruckstein AM, Donoho DL, Elad M (2009) From sparse solutions of systems of equations to sparse modeling of signals and images. SIAM Rev 51(11): 34-81.
-
(2009)
SIAM Rev
, vol.51
, Issue.11
, pp. 34-81
-
-
Bruckstein, A.M.1
Donoho, D.L.2
Elad, M.3
-
6
-
-
77956289955
-
Classic and contemporary approaches to modeling biochemical reactions
-
Chen WW, Niepel M, Sorger PK (2010) Classic and contemporary approaches to modeling biochemical reactions. Genes Develop 24: 1861-1875.
-
(2010)
Genes Develop
, vol.24
, pp. 1861-1875
-
-
Chen, W.W.1
Niepel, M.2
Sorger, P.K.3
-
7
-
-
7044231546
-
An iterative thresholding algorithm for linear inverse problems with a sparsity constraint
-
Daubechies I, Defrise M, De-Mol C (2004) An iterative thresholding algorithm for linear inverse problems with a sparsity constraint. Commun Pure Appl Math 57(11): 1413-1457.
-
(2004)
Commun Pure Appl Math
, vol.57
, Issue.11
, pp. 1413-1457
-
-
Daubechies, I.1
Defrise, M.2
De-Mol, C.3
-
9
-
-
80054718671
-
A computational systems biology software platform for multiscale modeling and simulation: integrating whole-body physiology, disease biology, and molecular reaction networks
-
Eissing T, Kuepfer L, Becker C, Block M, Coboeken K, Gaub T, Goerlitz L, Jaeger J, Loosen R, Ludewig B, Meyer M, Niederalt C, Sevestre M, Siegmund HU, Solodenko J, Thelen K, Telle U, Weiss W, Wendl T, Willmann S, Lippert J (2011) A computational systems biology software platform for multiscale modeling and simulation: integrating whole-body physiology, disease biology, and molecular reaction networks. Front Comput Physiol Med 2: 4.
-
(2011)
Front Comput Physiol Med
, vol.2
, pp. 4
-
-
Eissing, T.1
Kuepfer, L.2
Becker, C.3
Block, M.4
Coboeken, K.5
Gaub, T.6
Goerlitz, L.7
Jaeger, J.8
Loosen, R.9
Ludewig, B.10
Meyer, M.11
Niederalt, C.12
Sevestre, M.13
Siegmund, H.U.14
Solodenko, J.15
Thelen, K.16
Telle, U.17
Weiss, W.18
Wendl, T.19
Willmann, S.20
Lippert, J.21
more..
-
11
-
-
84862792654
-
Inverse problems in systems biology
-
Engl HW, Flamm C, Kügler P, Lu J, Müller S, Schuster P (2009) Inverse problems in systems biology. Inverse Probl 25(12): 123014.
-
(2009)
Inverse Probl
, vol.25
, Issue.12
, pp. 123014
-
-
Engl, H.W.1
Flamm, C.2
Kügler, P.3
Lu, J.4
Müller, S.5
Schuster, P.6
-
13
-
-
0004236492
-
-
Baltimore and London: The Johns Hopkins University Press
-
Golub GH, van Loan CF (1996) Matrix computations. The Johns Hopkins University Press, Baltimore and London.
-
(1996)
Matrix Computations
-
-
Golub, G.H.1
van Loan, C.F.2
-
17
-
-
0000567621
-
Numerical solution of the stable, non-negative definite Lyapunov equation
-
Hammarling SJ (1982) Numerical solution of the stable, non-negative definite Lyapunov equation. IMA J Num Anal 2: 303-325.
-
(1982)
IMA J Num Anal
, vol.2
, pp. 303-325
-
-
Hammarling, S.J.1
-
18
-
-
5044229321
-
The impact of systems approaches on biological problems in drug discovery
-
Hood L, Perlmutter RM (2004) The impact of systems approaches on biological problems in drug discovery. Nat Biotechnol 22(10): 1215-1217.
-
(2004)
Nat Biotechnol
, vol.22
, Issue.10
, pp. 1215-1217
-
-
Hood, L.1
Perlmutter, R.M.2
-
19
-
-
7444253428
-
Systems biology and new technologies enable predictive and preventive medicine
-
Hood L, Heath JR, Phelps ME, Lin B (2004) Systems biology and new technologies enable predictive and preventive medicine. Science 306: 640-643.
-
(2004)
Science
, vol.306
, pp. 640-643
-
-
Hood, L.1
Heath, J.R.2
Phelps, M.E.3
Lin, B.4
-
21
-
-
75549090213
-
Kegg for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M (2010) Kegg for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 38(suppl 1): D355-D360.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.SUPPL. 1
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
22
-
-
0345295973
-
An equation error method to recover diffusion from the distributed observation
-
Kärkkäinen T (1997) An equation error method to recover diffusion from the distributed observation. Inverse Probl 13(4): 1033.
-
(1997)
Inverse Probl
, vol.13
, Issue.4
, pp. 1033
-
-
Kärkkäinen, T.1
-
23
-
-
33646884848
-
Sbmltoolbox: an sbml toolbox for matlab users
-
Keating SM, Bornstein BJ, Finney A, Hucka M (2006) Sbmltoolbox: an sbml toolbox for matlab users. Bioinformatics 22(10): 1275-1277.
-
(2006)
Bioinformatics
, vol.22
, Issue.10
, pp. 1275-1277
-
-
Keating, S.M.1
Bornstein, B.J.2
Finney, A.3
Hucka, M.4
-
24
-
-
0036500993
-
Systems biology: a brief overview
-
Kitano H (2002) Systems biology: a brief overview. Science 295(5560): 1662-1664.
-
(2002)
Science
, vol.295
, Issue.5560
, pp. 1662-1664
-
-
Kitano, H.1
-
25
-
-
71149108764
-
-
Weinheim: Wiley-VCH
-
Klipp E, Liebermeister W, Wierling C, Kowald A, Lehrach H, Herwig R (2009) Systems biology: a textbook. Wiley-VCH, Weinheim.
-
(2009)
Systems Biology: A Textbook
-
-
Klipp, E.1
Liebermeister, W.2
Wierling, C.3
Kowald, A.4
Lehrach, H.5
Herwig, R.6
-
26
-
-
63249117139
-
The role of predictive modelling in rationally re-engineering biological systems
-
Koide T, Lee Pang W, Baliga NS (2009) The role of predictive modelling in rationally re-engineering biological systems. Nat Rev Micro 7(4): 297-305.
-
(2009)
Nat Rev Micro
, vol.7
, Issue.4
, pp. 297-305
-
-
Koide, T.1
Lee Pang, W.2
Baliga, N.S.3
-
27
-
-
84855923550
-
Multiscale mechanistic modeling in pharmaceutical research and development
-
In: Goryanin II, Goryachev AB (eds), Springer, New York
-
Kuepfer L, Lippert J, Eissing T (2012) Multiscale mechanistic modeling in pharmaceutical research and development. In: Goryanin II, Goryachev AB (eds) Advances in systems biology, Advances in Experimental Medicine and Biology, vol 736. Springer, New York, pp 543-561.
-
(2012)
Advances in systems biology, Advances in Experimental Medicine and Biology
, vol.736
, pp. 543-561
-
-
Kuepfer, L.1
Lippert, J.2
Eissing, T.3
-
28
-
-
84864988006
-
Moment fitting for parameter inference in repeatedly and partially observed stochastic biological models
-
Kügler P (2012) Moment fitting for parameter inference in repeatedly and partially observed stochastic biological models. PLoS ONE 7(8): e43001.
-
(2012)
PLoS ONE
, vol.7
, Issue.8
-
-
Kügler, P.1
-
29
-
-
79957476407
-
On sparse solution of underdetermined linear systems
-
Lai MJ (2010) On sparse solution of underdetermined linear systems. J Concr Appl Math 8: 296-327.
-
(2010)
J Concr Appl Math
, vol.8
, pp. 296-327
-
-
Lai, M.J.1
-
31
-
-
72449143085
-
Regularized total least squares: computational aspects and error bounds
-
Lu S, Pereverzev SV, Tautenhahn U (2009) Regularized total least squares: computational aspects and error bounds. SIAM J Matrix Anal Appl 31(3): 918-941.
-
(2009)
SIAM J Matrix Anal Appl
, vol.31
, Issue.3
, pp. 918-941
-
-
Lu, S.1
Pereverzev, S.V.2
Tautenhahn, U.3
-
32
-
-
35348813628
-
Propagation of large concentration changes in reversible protein-binding networks
-
Maslov S, Ispolatov I (2007) Propagation of large concentration changes in reversible protein-binding networks. Proc Natl Acad Sci 104(34): 13655-13660.
-
(2007)
Proc Natl Acad Sci
, vol.104
, Issue.34
, pp. 13655-13660
-
-
Maslov, S.1
Ispolatov, I.2
-
33
-
-
34548161097
-
Spreading out of perturbations in reversible reaction networks
-
Maslov S, Sneppen K, Ispolatov I (2007) Spreading out of perturbations in reversible reaction networks. New J Phys 9(8): 273.
-
(2007)
New J Phys
, vol.9
, Issue.8
, pp. 273
-
-
Maslov, S.1
Sneppen, K.2
Ispolatov, I.3
-
34
-
-
70449515104
-
Keggconverter: a tool for the in-silico modelling of metabolic networks of the kegg pathways database
-
Moutselos K, Kanaris I, Chatziioannou A, Maglogiannis I, Kolisis F (2009) Keggconverter: a tool for the in-silico modelling of metabolic networks of the kegg pathways database. BMC Bioinf 10(1): 324.
-
(2009)
BMC Bioinf
, vol.10
, Issue.1
, pp. 324
-
-
Moutselos, K.1
Kanaris, I.2
Chatziioannou, A.3
Maglogiannis, I.4
Kolisis, F.5
-
35
-
-
70449513896
-
Computational modelling of cancerous mutations in the egfr/erk signalling pathway
-
Orton RJ, Adriaens ME, Gormand A, Sturm OE, Kolch W, Gilbert DR (2009) Computational modelling of cancerous mutations in the egfr/erk signalling pathway. BMC Syst Biol 3: 100.
-
(2009)
BMC Syst Biol
, vol.3
, pp. 100
-
-
Orton, R.J.1
Adriaens, M.E.2
Gormand, A.3
Sturm, O.E.4
Kolch, W.5
Gilbert, D.R.6
-
37
-
-
84866366938
-
Sparse recovery in inverse problems
-
In: Fornasier M (ed), deGruyter, New York
-
Ramlau R, Teschke G (2010) Sparse recovery in inverse problems. In: Fornasier M (ed) Theoretical foundations and numerical methods for sparse recovery, radon series on Computational and Applied Mathematics, vol 9. deGruyter, New York, pp 1-63.
-
(2010)
Theoretical foundations and numerical methods for sparse recovery, radon series on Computational and Applied Mathematics
, vol.9
, pp. 1-63
-
-
Ramlau, R.1
Teschke, G.2
-
38
-
-
84900013576
-
Applied stochastic processes in science and engineering
-
Scott M (2011) Applied stochastic processes in science and engineering. Free e-book, http://www. math. uwaterloo. ca.
-
(2011)
Free e-book
-
-
Scott, M.1
-
40
-
-
0038281453
-
Observing and interpreting correlations in metabolomic networks
-
Steuer R, Kurths J, Fiehn O, Weckwerth W (2003) Observing and interpreting correlations in metabolomic networks. Bioinformatics 19: 1019-1026.
-
(2003)
Bioinformatics
, vol.19
, pp. 1019-1026
-
-
Steuer, R.1
Kurths, J.2
Fiehn, O.3
Weckwerth, W.4
-
41
-
-
33747061013
-
Structural kinetic modeling of metabolic networks
-
Steuer R, Gross T, Selbig J, Blasius B (2006) Structural kinetic modeling of metabolic networks. Proc Natl Acad Sci 103(32): 11868-11873.
-
(2006)
Proc Natl Acad Sci
, vol.103
, Issue.32
, pp. 11868-11873
-
-
Steuer, R.1
Gross, T.2
Selbig, J.3
Blasius, B.4
-
42
-
-
84900021512
-
Covain: a toolbox for uni- and multivariate statistics, time- series and correlation network analysis and inverse estimation of the differential jacobian from metabolomics covariance data
-
Sun X, Weckwerth W (2012) Covain: a toolbox for uni- and multivariate statistics, time- series and correlation network analysis and inverse estimation of the differential jacobian from metabolomics covariance data. Metabolomics 306: 640-643.
-
(2012)
Metabolomics
, vol.306
, pp. 640-643
-
-
Sun, X.1
Weckwerth, W.2
-
45
-
-
84865433010
-
How close is the sample covariance matrix totheactual covariance matrix?
-
doi:10.1007/s10959-010-0338-z
-
Vershynin R (2012) How close is the sample covariance matrix totheactual covariance matrix? J Theor Probab 25: 655-686. doi: 10. 1007/s10959-010-0338-z.
-
(2012)
J Theor Probab
, vol.25
, pp. 655-686
-
-
Vershynin, R.1
-
47
-
-
79961195281
-
Keggtranslator: visualizing and converting the kegg pathway database to various formats
-
Wrzodek C, Dräger A, Zell A (2011) Keggtranslator: visualizing and converting the kegg pathway database to various formats. Bioinformatics 27(16): 2314-2315.
-
(2011)
Bioinformatics
, vol.27
, Issue.16
, pp. 2314-2315
-
-
Wrzodek, C.1
Dräger, A.2
Zell, A.3
-
48
-
-
70350328441
-
On Tikhonov regularization with non-convex sparsity constraints
-
Zarzer CA (2009) On Tikhonov regularization with non-convex sparsity constraints. Inverse Probl 25(2): 025006.
-
(2009)
Inverse Probl
, vol.25
, Issue.2
, pp. 025006
-
-
Zarzer, C.A.1
|