Precise organization of metal nanoparticles on DNA origami template

Methods

Volumn 67, Issue 2, 2014, Pages 205-214

  Liu, Qing ^a   Song, Chen ^a   Wang, Zhen Gang ^a   Li, Na ^a   Ding, Baoquan ^a  

^a NATIONAL CENTER FOR NANOSCIENCE AND TECHNOLOGY   (China)

Author keywords

DNA origami; Metal nanoparticle; Plasmonic; Self assembly

Indexed keywords

GOLD NANOPARTICLE; METAL NANOPARTICLE; NANOCAGE; NANOMATERIAL; NANOROD; NANOSPHERE; SILVER NANOPARTICLE; GOLD; SILVER; SINGLE STRANDED DNA; VIRUS DNA;

ARTICLE; ATOMIC FORCE MICROSCOPY; BINDING SITE; CHEMICAL MODIFICATION; DNA ORIGAMI TEMPLATE; DNA STRAND; DNA STRUCTURE; DNA TEMPLATE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; METAL BINDING; NANOFABRICATION; PRIORITY JOURNAL; CHEMISTRY; ENTEROBACTERIA PHAGE M13; GENETICS; ULTRASTRUCTURE;

BACTERIOPHAGE M13; DNA, SINGLE-STRANDED; DNA, VIRAL; GOLD; METAL NANOPARTICLES; SILVER;

EID: 84899731261     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2013.10.006     Document Type: Article

References (121)

1. Wilcoxon J.P., Abrams B.L. Chem. Soc. Rev. 2006, 35:1162-1194.
2. Murray R.W. Chem. Rev. 2008, 108:2688-2720.
3. Jana N.R., Pal T. Adv. Mater. 2007, 19:1761-1765.
4. Li Z.Y., Xia Y.N. Nano Lett. 2010, 10:243-249.
5. Liu Y.L., Ai K.L., Cheng X.L., Huo L.H., Lu L.H. Adv. Funct. Mater. 2010, 20:951-956.
6. Li X.M., Xia J.P., Li W., Zhang S.S. Chem. Asian J. 2010, 5:294-300.
7. Charles D.E., Aherne D., Gara M., Ledwith D.M., Gun'ko Y.K., Kelly J.M., Blau W.J., Brennan-Fournet M.E. ACS Nano 2010, 4:55-64.
8. Ang Y.S., Yung L.Y.L. ACS Nano 2012, 6:8815-8823.
9. Syed M.A., Bokhari S.H.A. J. Biomed. Nanotechnol. 2011, 7:229-237.
10. Rippel R.A., Seifalian A.M. J. Nanosci. Nanotechnol. 2011, 11:3740-3748.
11. Yezhelyev M., Yacoub R., O'Regan R. Nanomedicine-UK 2009, 4:83-103.
12. Wang C.X., Wang Y., Xu L., Shi X.D., Li X.W., Xu X.W., Sun H.C., Yang B., Lin Q. Small 2013, 9:413-420.
13. Ng V.W.K., Berti R., Lesage F., Kakkar A. J. Mater. Chem. B 2013, 1:9-25.
14. Ding B.Q., Deng Z.T., Yan H., Cabrini S., Zuckermann R.N., Bokor J. J. Am. Chem. Soc. 2010, 132:3248-3249.
15. Liu J.F., Geng Y.L., Pound E., Gyawali S., Ashton J.R., Hickey J., Woolley A.T., Harb J.N. ACS Nano 2011, 5:2240-2247.
16. Rossouw D., Botton G.A. Phys. Rev. Lett. 2013, 110:066801.
17. Ray A., Lee Y.E.K., Kim G., Kopelman R. Small 2012, 8:2213-2221.
18. Shegai T., Chen S., Miljkovic V.D., Zengin G., Johansson P., Kall M. Nat. Commun. 2011, 2:481.
19. He L.N., Ozdemir K., Zhu J.G., Kim W., Yang L. Nat. Nanotechnol. 2011, 6:428-432.
20. Xiao Z.Y., Ji C.W., Shi J.J., Pridgen E.M., Frieder J., Wu J., Farokhzad O.C. Angew. Chem. Int. Ed. 1857, 51(2012):11853-11857.
21. Blankschien M.D., Pretzer L.A., Huschka R., Halas N.J., Gonzalez R., Wong M.S. ACS Nano 2013, 7:654-663.
22. Prodan E., Radloff C., Halas N.J., Nordlander P. Science 2003, 302:419-422.
23. Scholl J.A., Koh A.L., Dionne J.A. Nature 2012, 483:421-427.
24. Hohenau A., Krenn J.R., Beermann J., Bozhevolnyi S.I., Rodrigo S.G., Martin-Moreno L., Garcia-Vidal F. Phys. Rev. B 2006, 73:155404.
25. Polyushkin D.K., Hendry E., Stone E.K., Barnes W.L. Nano Lett. 2011, 11:4718-4724.
26. Parsons J., Hendry E., Burrows C.P., Auguie B., Sambles J.R., Barnes W.L. Phys. Rev. B 2009, 79:073412.
27. Encina E.R., Coronado E.A. J. Phys. Chem. C 2010, 114:3918-3923.
28. Tang X.S., O'Shea S.J., Vakarelski I.U. Adv. Mater. 2010, 22:5150-5153.
29. ul Haq E., Liu Z.M., Zhang Y.A., Ahmad S.A.A., Wong L.S., Armes S.P., Hobbs J.K., Leggett G.J., Micklefield J., Roberts C.J., Weaver J.M.R. Nano Lett. 2010, 10:4375-4380.
30. Pires D., Hedrick J.L., De Silva A., Frommer J., Gotsmann B., Wolf H., Despont M., Duerig U., Knoll A.W. Science 2010, 328:732-735.
31. Xu S., Ding Y., Wei Y.G., Fang H., Shen Y., Sood A.K., Polla D.L., Wang Z.L. J. Am. Chem. Soc. 2009, 131:6670-6671.
32. Menke E.J., Thompson M.A., Xiang C., Yang L.C., Penner R.M. Nat. Mater. 2006, 5:914-919.
33. Abu Hatab N.A., Oran J.M., Sepaniak M.J. ACS Nano 2008, 2:377-385.
34. Li M.W., Bhiladvala R.B., Morrow T.J., Sioss J.A., Lew K.K., Redwing J.M., Keating C.D., Mayer T.S. Nat. Nanotechnol. 2008, 3:88-92.
35. Smits E.C.P., Mathijssen S.G.J., van Hal P.A., Setayesh S., Geuns T.C.T., Mutsaers K.A.H.A., Cantatore E., Wondergem H.J., Werzer O., Resel R., Kemerink M., Kirchmeyer S., Muzafarov A.M., Ponomarenko S.A., de Boer B., Blom P.W.M., de Leeuw D.M. Nature 2008, 455:956-959.
36. Wang T., Zhuang J.Q., Lynch J., Chen O., Wang Z.L., Wang X.R., LaMontagne D., Wu H.M., Wang Z.W., Cao Y.C. Science 2012, 338:358-363.
37. Bita I., Yang J.K.W., Jung Y.S., Ross C.A., Thomas E.L., Berggren K.K. Science 2008, 321:939-943.
38. Romano F., Sciortino F. Nat. Mater. 2011, 10:171-173.
39. Li L.M., Beniash E., Zubarev E.R., Xiang W.H., Rabatic B.M., Zhang G.Z., Stupp S.I. Nat. Mater. 2003, 2:689-694.
40. Sheikholeslami S., Jun Y.W., Jain P.K., Alivisatos A.P. Nano Lett. 2010, 10:2655-2660.
41. Watanabe-Tamaki R., Ishikawa A., Tanaka T., Zako T., Maeda M. J. Phys. Chem. C 2012, 116:15028-15033.
42. Yan W.J., Xu L.G., Xu C.L., Ma W., Kuang H., Wang L.B., Kotov N.A. J. Am. Chem. Soc. 2012, 134:15114-15121.
43. Mastroianni A.J., Claridge S.A., Alivisatos A.P. J. Am. Chem. Soc. 2009, 131:8455-8459.
44. Shi D.W., Song C., Jiang Q., Wang Z.G., Ding B.Q. Chem. Commun. 2013, 49:2533-2535.
45. Zheng Y.H., Thai T., Reineck P., Qiu L., Guo Y.M., Bach U. Adv. Funct. Mater. 2013, 23:1519-1526.
46. Park S.Y., Lytton-Jean A.K.R., Lee B., Weigand S., Schatz G.C., Mirkin C.A. Nature 2008, 451:553-556.
47. Pinto Y.Y., Le J.D., Seeman N.C., Musier-Forsyth K., Taton T.A., Kiehl R.A. Nano Lett. 2005, 5:2399-2402.
48. Zhang J., Liu Y., Ke Y., Yan H. Nano Lett. 2006, 6:248-251.
49. Ding B.Q., Cabrini S., Zuckermann R.N., Bokor J. J. Vac. Sci. Technol. B 2009, 27:184-187.
50. Zheng J.W., Constantinou P.E., Micheel C., Alivisatos A.P., Kiehl R.A., Seeman N.C. Nano Lett. 2006, 6:1502-1504.
51. Sharma J., Chhabra R., Cheng A., Brownell J., Liu Y., Yan H. Science 2009, 323:112-116.
52. Liu Y., Ke Y.G., Yan H. J. Am. Chem. Soc. 2005, 127:17140-17141.
53. Park S.H., Pistol C., Ahn S.J., Reif J.H., Lebeck A.R., Dwyer C., LaBean T.H. Angew. Chem. Int. Ed. 2006, 45:735-739.
54. Yang Y., Zhao Z., Zhang F., Nangreave J., Liu Y., Yan H. Nano Lett. 2013, 13:1862-1866.
55. Wei B., Dai M.J., Yin P. Nature 2012, 485. 623-526.
56. Ke Y.G., Ong L.L., Shih W.M., Yin P. Science 2012, 338:1177-1183.
57. Sanderson K. Nature 2010, 464:158-159.
58. Rothemund P.W.K. Nature 2006, 440:297-302.
59. Andersen E.S., Dong M.D., Nielsen M.M., Jahn K., Lind-Thomsen A., Mamdouh W., Gothelf K.V., Besenbacher F., Kjems J. ACS Nano 2008, 2:1213-1218.
60. Pound E., Ashton J.R., Becerril H.A., Woolley A.T. Nano Lett. 2009, 9:4302-4305.
61. Douglas S.M., Marblestone A.H., Teerapittayanon S., Vazquez A., Church G.M., Shih W.M. Nucleic Acids Res. 2009, 37:5001-5006.
62. Ke Y.G., Sharma J., Liu M.H., Jahn K., Liu Y., Yan H. Nano Lett. 2009, 9:2445-2447.
63. Kuzuya A., Komiyama M. Chem. Commun. 2009, 4182-4184.
64. Han D.R., Pal S., Nangreave J., Deng Z.T., Liu Y., Yan H. Science 2011, 332:342-346.
65. Andersen E.S., Dong M., Nielsen M.M., Jahn K., Subramani R., Mamdouh W., Golas M.M., Sander B., Stark H., Oliveira C.L.P., Pedersen J.S., Birkedal V., Besenbacher F., Gothelf K.V., Kjems J. Nature 2009, 459:73-76.
66. Dietz H., Douglas S.M., Shih W.M. Science 2009, 325:725-730.
67. Douglas S.M., Dietz H., Liedl T., Hogberg B., Graf F., Shih W.M. Nature 2009, 459:414-418.
68. Acuna G.P., Bucher M., Stein I.H., Steinhauer C., Kuzyk A., Holzmeister P., Schreiber R., Moroz A., Stefani F.D., Liedl T., Simmel F.C., Tinnefeld P. ACS Nano 2012, 6:3189-3195.
69. Pal S., Deng Z.T., Ding B.Q., Yan H., Liu Y. Angew. Chem. Int. Ed. 2010, 49:2700-2704.
70. Pal S., Varghese R., Deng Z.T., Zhao Z., Kumar A., Yan H., Liu Y. Angew. Chem. Int. Ed. 2011, 50:4176-4179.
71. Deng Z.T., Samanta A., Nangreave J., Yan H., Liu Y. J. Am. Chem. Soc. 2012, 134:17424-17427.
72. Du K., Ko S.H., Gallatin G.M., Yoon H.P., Liddle J.A., Berglund A.J. Chem. Commun. 2013, 49:907-909.
73. Ko S.H., Du K., Liddle J.A. Angew. Chem. Int. Ed. 2013, 52:1193-1197.
74. Bui H., Onodera C., Kidwell C., Tan Y., Graugnard E., Kuang W., Lee J., Knowlton W.B., Yurke B., Hughes W.L. Nano Lett. 2010, 10:3367-3372.
75. Sharma J., Chhabra R., Andersen C.S., Gothelf K.V., Yan H., Liu Y. J. Am. Chem. Soc. 2008, 130:7820-7821.
76. Hill H.D., Millstone J.E., Banholzer M.J., Mirkin C.A. ACS Nano 2009, 3:418-424.
77. Storhofff J.J., Elghanian R., Mirkin C.A., Letsinger R.L. Langmuir 2002, 18:6666-6670.
78. Wolf L.K., Gao Y., Georgiadis R.M. Langmuir 2004, 20:3357-3361.
79. Pei H., Li F., Wan Y., Wei M., Liu H.J., Su Y., Chen N., Huang Q., Fan C.H. J. Am. Chem. Soc. 1879, 134(2012):11876-11879.
80. Zhang X., Servos M.R., Liu J.W. J. Am. Chem. Soc. 2012, 134:7266-7269.
81. Herdt A.R., Drawz S.M., Kang Y.J., Taton T.A. Colloid Surf. B 2006, 51:130-139.
82. Zanchet D., Micheel C.M., Parak W.J., Gerion D., Alivisatos A.P. Nano Lett. 2001, 1:32-35.
83. Claridge S.A., Liang H.Y.W., Basu S.R., Frechet J.M.J., Alivisatos A.P. Nano Lett. 2008, 8:1202-1206.
84. Aldaye F.A., Sleiman H.F. J. Am. Chem. Soc. 2007, 129:4130-4131.
85. Wen Y.Q., McLaughlin C.K., Lo P.K., Yang H., Sleiman H.F. Bioconjug. Chem. 2010, 21:1413-1416.
86. Busson M.P., Rolly B., Stout B., Bonod N., Larquet E., Polman A., Bidault S. Nano Lett. 2011, 11:5060-5065.
87. Busson M.P., Rolly B., Stout B., Bonod N., Bidault S. Nat. Commun. 2012, 3:962.
88. Li Z.T., Cheng E.J., Huang W.X., Zhang T., Yang Z.Q., Liu D.S., Tang Z.Y. J. Am. Chem. Soc. 2011, 133:15284-15287.
89. Lim D.K., Jeon K.S., Kim H.M., Nam J.M., Suh Y.D. Nat. Mater. 2010, 9:60-67.
90. Zhang C., Macfarlane R.J., Young K.L., Choi C.H.J., Hao L.L., Auyeung E., Liu G.L., Zhou X.Z., Mirkin C.A. Nat. Mater. 2013, 12:741-746.
91. Zhang J.P., Liu Y., Ke Y.G., Yan H. Nano Lett. 2006, 6:248-251.
92. Li Z., Jin R.C., Mirkin C.A., Letsinger R.L. Nucleic Acids Res. 2002, 30:1558-1562.
93. Zhang T., Chen P., Sun Y.W., Xing Y.Z., Yang Y., Dong Y.C., Xu L.J., Yang Z.Q., Liu D.S. Chem. Commun. 2011, 47:5774-5776.
94. Li K.R., Stockman M.I., Bergman D.J. Phys. Rev. Lett. 2003, 91:227402.
95. Shen X.B., Asenjo-Garcia A., Liu Q., Jiang Q., de Abajo F.J.G., Liu N., Ding B.Q. Nano Lett. 2013, 13:2128-2133.
96. Pilo-Pais M., Goldberg S., Samano E., LaBean T.H., Finkelstein G. Nano Lett. 2011, 11:3489-3492.
97. Kershner R.J., Bozano L.D., Micheel C.M., Hung A.M., Fornof A.R., Cha J.N., Rettner C.T., Bersani M., Frommer J., Rothemund P.W.K., Wallraff G.M. Nat. Nanotechnol. 2009, 4:557-561.
98. Hung A.M., Micheel C.M., Bozano L.D., Osterbur L.W., Wallraff G.M., Cha J.N. Nat. Nanotechnol. 2010, 5:121-126.
99. Shen X.B., Song C., Wang J.Y., Shi D.W., Wang Z.A., Liu N., Ding B.Q. J. Am. Chem. Soc. 2012, 134:146-149.
100. Kuzyk A., Schreiber R., Fan Z.Y., Pardatscher G., Roller E.M., Hogele A., Simmel F.C., Govorov A.O., Liedl T. Nature 2012, 483:311-314.
101. Fan Z.Y., Govorov A.O. Nano Lett. 2010, 10:2580-2587.
102. Zhao Z., Jacovetty E.L., Liu Y., Yan H. Angew. Chem. Int. Ed. 2011, 50:2041-2044.
103. Acuna G.P., Moller F.M., Holzmeister P., Beater S., Lalkens B., Tinnefeld P. Science 2012, 338:506-510.
104. Burda C., Chen X.B., Narayanan R., El-Sayed M.A. Chem. Rev. 2005, 105:1025-1102.
105. Tabor C., Van Haute D., El-Sayed M.A. ACS Nano 2009, 3:3670-3678.
106. Pal S., Deng Z., Wang H., Zou S., Liu Y., Yan H. J. Am. Chem. Soc. 2011, 133:17606-17609.
107. Santos K.D., Elias W.C., Signori A.M., Giacomelli F.C., Yang H., Domingos J.B. J. Phys. Chem. C 2012, 116:4594-4604.
108. Smith W.E. Chem. Soc. Rev. 2008, 37:955-964.
109. Lee J.S., Lytton-Jean A.K.R., Hurst S.J., Mirkin C.A. Nano Lett. 2007, 7:2112-2115.
110. Pal S., Sharma J., Yan H., Liu Y. Chem. Commun. 2009, 6059-6061.
111. Sobczak J.P.J., Martin T.G., Gerling T., Dietz H. Science 2012, 338:1458-1461.
112. Ye X.C., Jin L.H., Caglayan H., Chen J., Xing G.Z., Zheng C., Vicky D.N., Kang Y.J., Engheta N., Kagan C.R., Murray C.B. ACS Nano 2012, 6:2804-2817.
113. Ye X.C., Zheng C., Chen J., Gao Y.Z., Murray C.B. Nano Lett. 2013, 13:765-771.
114. Ye X.C., Gao Y.Z., Chen J., Reifsnyder D.C., Zheng C., Murray C.B. Nano Lett. 2013, 13:2163-2171.
115. Liu M.Z., Guyot-Sionnest P. J. Phys. Chem. B 2005, 109:22192-22200.
116. Gu H.Z., Chao J., Xiao S.J., Seeman N.C. Nature 2010, 465:202-205.
117. Maune H.T., Han S.P., Barish R.D., Bockrath M., Goddard W.A., Rothemund P.W.K., Winfree E. Nat. Nanotechnol. 2010, 5:61-66.
118. Wang R.S., Nuckolls C., Wind S.J. Angew. Chem. Int. Ed. 2012, 51:11325-11327.
119. Mangalum A., Rahman M., Norton M.L. J. Am. Chem. Soc. 2013, 135:2451-2454.
120. Xiong H.M., Sfeir M.Y., Gang O. Nano Lett. 2010, 10:4456-4462.
121. Maye M.M., Gang O., Cotlet M. Chem. Commun. 2010, 46:6111-6113.