Complex shapes self-assembled from single-stranded DNA tiles

Nature

Volumn 485, Issue 7400, 2012, Pages 623-626

  Wei, Bryan ^a,b   Dai, Mingjie ^b   Yin, Peng ^a,b  

^a HARVARD MEDICAL SCHOOL   (United States)

^b HARVARD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SINGLE STRANDED DNA; NANOMATERIAL;

CRYSTAL; DNA; FINITE DIFFERENCE METHOD; PIXEL; RNA; TWO-DIMENSIONAL MODELING;

ARTICLE; DNA BINDING; DNA STRAND; DNA STRUCTURE; MOLECULAR BIOLOGY; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN FOLDING; CHEMISTRY; COMPUTER PROGRAM; CONFORMATION; SYNTHESIS;

DNA, SINGLE-STRANDED; NANOSTRUCTURES; NUCLEIC ACID CONFORMATION; SOFTWARE;

EID: 84863186339     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature11075     Document Type: Article

References (32)

1. Seeman, N. C. Nucleic acid junctions and lattices. J. Theor. Biol. 99, 237-247 (1982).
2. Fu, T. J. & Seeman, N. C. DNA double-crossover molecules. Biochemistry 32, 3211-3220 (1993).
3. Winfree, E., Liu, F., Wenzler, L. A. & Seeman, N. C. Design and self-assembly of twodimensional DNA crystals. Nature 394, 539-544 (1998).
4. Yan, H., Park, S. H., Finkelstein, G., Reif, J. H. & LaBean, T. H. DNA-templated selfassembly of protein arrays and highly conductive nanowires. Science 301, 1882-1884 (2003).
5. Rothemund, P. W. K., Papadakis, N.&Winfree, E. Algorithmic self-assembly ofDNA Sierpinski triangles. PLoS Biol. 2, e424 (2004).
6. Shih, W., Quispe, J.& Joyce, G. A 1.7-kilobase single-strandedDNAthat folds into a nanoscale octahedron. Nature 427, 618-621 (2004).
7. Chworos, A. et al. Building programmable jigsaw puzzles with RNA. Science 306, 2068-2072 (2004).
8. Park, S. H. et al. Finite-size, fully-addressable DNA tile lattices formed by hierarchical assembly procedures. Angew. Chem. Int. Ed. 45, 735-739 (2006).
9. Rothemund, P. W. K. FoldingDNAto create nanoscale shapes and patterns. Nature 440, 297-302 (2006).
10. Schulman, R. & Winfree, E. Synthesis of crystals with a programmable kinetic barrier to nucleation. Proc. Natl Acad. Sci. USA 104, 15236-15241 (2007).
11. He, Y. et al. Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra. Nature 452, 198-201 (2008).
12. Yin, P. et al. Programming DNA tube circumferences. Science 321, 824-826 (2008).
13. Sharma, J. et al. Control of self-assembly of DNA tubules through integration of gold nanoparticles. Science 323, 112-116 (2009).
14. Douglas, S. M. et al. Self-assembly of DNA into nanoscale three-dimensional shapes. Nature 459, 414-418 (2009).
15. Andersen, E. S. et al. Self-assembly of a nanoscale DNA box with a controllable lid. Nature 459, 73-76 (2009).
16. Dietz, H., Douglas, S. M. & Shih, W. M. Folding DNA into twisted and curved nanoscale shapes. Science 325, 725-730 (2009).
17. Zheng, J. P. et al. From molecular to macroscopic via the rational design of selfassembled 3D DNA crystal. Nature 461, 74-77 (2009).
18. Han, D. et al. DNA origami with complex curvatures in three-dimensional space. Science 332, 342-346 (2011).
19. Liu, W., Zhong, H.,Wang, R.&Seeman, N. Crystalline two dimensionalDNA origami arrays. Angew. Chem. Int. Ed. 50, 264-267 (2011).
20. Zhao, Z., Liu, Y. & Yan, H. Organizing DNA origami tiles into larger structures using preformed scaffold frames. Nano Lett. 11, 2997-3002 (2011).
21. Woo, S. & Rothemund, P. Programmable molecular recognition based on the geometry of DNA nanostructures. Nat. Chem. 3, 620-627 (2011).
22. Delebecque, C. J., Lindner, A. B., Silver, P. A. & Aldaye, F. A. Organization of intracellular reactions with rationally designed RNA assemblies. Science 333, 470-474 (2011).
23. Lin, C., Liu, Y., Rinker, S. & Yan, H. DNA tile based self-assembly: building complex nanoarchitectures. ChemPhysChem 7, 1641-1647 (2006).
24. Seeman, N. Nanomaterials based on DNA. Annu. Rev. Biochem. 79, 65-87 (2010).
25. Tørring, T., Voigt, N. V., Nangreave, J., Yan, H. & Gothelf, K. V. DNA origami: a quantum leap for self-assembly of complex structures. Chem. Soc. Rev. 40, 5636-5646 (2011).
26. Seeman, N. De novo design of sequences for nucleic acid structural engineering. J. Biomol. Struct. Dyn. 8, 573-581 (1990).
27. O'Neill, P., Rothemund, P. W. K., Kumar, A.& Fygenson, D. SturdierDNA nanotubes via ligation. Nano Lett. 6, 1379-1383 (2006).
28. Rajendran, A., Endo, M., Katsuda, Y., Hidaka, K.& Sugiyama, H. Photo-crosslinkingassisted thermal stability of DNAorigami structures and its application for highertemperature self-assembly. J. Am. Chem. Soc. 133, 14488-14491 (2011).
29. Seelig, G., Soloveichik, D., Zhang, D. Y. & Winfree, E. Enzyme-free nucleic acid logic circuits. Science 314, 1585-1588 (2006).
30. Yin, P., Choi, H. M. T., Calvert, C. R. & Pierce, N. A. Programming biomolecular selfassembly pathways. Nature 451, 318-322 (2008).
31. Wei, B., Wang, Z. & Mi, Y. Uniquimer: software of de novo DNA sequence generation for DNA self-assembly: an introduction and the related applications in DNA self-assembly. J. Comput. Theor. Nanosci. 4, 133-141 (2007).
32. Hansma, H. G.& Laney, D. E.DNAbinding to mica correlates with cationic radius: assay by atomic force microscopy. Biophys. J. 70, 1933-1939 (1996).