Adaptable probabilistic mapping of short reads using position specific scoring matrices

BMC Bioinformatics

Volumn 15, Issue 1, 2014, Pages

  Kerpedjiev, Peter ^a,b   Frellsen, Jes ^a,c   Lindgreen, Stinus ^a,d   Krogh, Anders ^a,e  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b UNIVERSITY OF VIENNA   (Austria)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^d UNIVERSITY OF CANTERBURY   (New Zealand)

^e UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

Ancient DNA; Next generation sequencing; PAR CLIP; Sequence alignment; Short read mapping; Xeno mapping

Indexed keywords

BIOLOGY; DNA SEQUENCES; GENE ENCODING; MAPPING; QUALITY CONTROL;

ANCIENT DNAS; NEXT-GENERATION SEQUENCING; PAR-CLIP; SEQUENCE ALIGNMENTS; SHORT-READ MAPPINGS;

MATRIX ALGEBRA;

DROSOPHILA MELANOGASTER; PLASMODIUM FALCIPARUM;

ANIMAL; ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; DROSOPHILA; GENOME; HUMAN; MOLECULAR EVOLUTION; POSITION WEIGHT MATRIX; PROBABILITY;

ANIMALS; DROSOPHILA; EVOLUTION, MOLECULAR; GENOME; HUMANS; POSITION-SPECIFIC SCORING MATRICES; PROBABILITY; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 84899646913     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-15-100     Document Type: Article

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