-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
33751059692
-
The marine viromes of four oceanic regions
-
Angly, F.E., Felts, B., Breitbart, M., Salamon, P., Edwards, R.A., Carlson, C., Chan, A.M., Haynes, M., Kelley, S., Liu, H., Mahaffy, J.M., Mueller, J.E., Nulton, J., Olson, R., Parsons, R., Rayhawk, S., Suttle, C.A. and Rohwer, F. (2006) The marine viromes of four oceanic regions. PLoS Biol. 4, e368.
-
(2006)
PLoS Biol.
, vol.4
-
-
Angly, F.E.1
Felts, B.2
Breitbart, M.3
Salamon, P.4
Edwards, R.A.5
Carlson, C.6
Chan, A.M.7
Haynes, M.8
Kelley, S.9
Liu, H.10
Mahaffy, J.M.11
Mueller, J.E.12
Nulton, J.13
Olson, R.14
Parsons, R.15
Rayhawk, S.16
Suttle, C.A.17
Rohwer, F.18
-
3
-
-
38549164691
-
GenBank
-
Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J. and Wheeler, D.L. (2008) GenBank. Nucleic Acids Res. 36, D25-D30.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
5
-
-
0141891348
-
Metagenomic analyses of an uncultured viral community from human feces
-
Breitbart, M., Hewson, I., Felts, B., Mahaffy, J.M., Nulton, J., Salamon, P. and Rohwer, F. (2003) Metagenomic analyses of an uncultured viral community from human feces. J. Bacteriol. 185, 6220-6223.
-
(2003)
J. Bacteriol.
, vol.185
-
-
Breitbart, M.1
Hewson, I.2
Felts, B.3
Mahaffy, J.M.4
Nulton, J.5
Salamon, P.6
Rohwer, F.7
-
6
-
-
58149291858
-
Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Cienegas, Mexico
-
Breitbart, M., Hoare, A., Nitti, A., Siefert, J., Haynes, M., Dinsdale, E. et al. (2008) Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Cienegas, Mexico. Environ. Microbiol. 11, 16-34.
-
(2008)
Environ. Microbiol.
, vol.11
-
-
Breitbart, M.1
Hoare, A.2
Nitti, A.3
Siefert, J.4
Haynes, M.5
Dinsdale, E.6
-
8
-
-
51249169259
-
A simple and efficient method for isolating RNA from pine trees
-
Chang, S., Puryear, J. and Cairney, J. (1993) A simple and efficient method for isolating RNA from pine trees. Plant Mol. Biol. Rep. 11, 113116.
-
(1993)
Plant Mol. Biol. Rep.
, vol.11
-
-
Chang, S.1
Puryear, J.2
Cairney, J.3
-
9
-
-
35348853758
-
A metagenomic survey of microbes in honey bee colony collapse disorder
-
Cox-Foster, D.L., Conlan, S., Holmes, E.C, Palacios, G., Evans, J.D., Moran, N.A., Quan, P.L., Briese, T., Hornig, M., Geiser, D.M., Martinson, V., vanEngelsdorp, D., Kalkstein, A.L., Drysdale, A., Hui, J., Zhai, J.H., Cui, L.W., Hutchison, S.K., Simons, J.F., Egholm, M., Pettis, J.S. and Lipkin, W.I. (2007) A metagenomic survey of microbes in honey bee colony collapse disorder. Science, 318, 283-287.
-
(2007)
Science
, vol.318
-
-
Cox-Foster, D.L.1
Conlan, S.2
Holmes, E.C.3
Palacios, G.4
Evans, J.D.5
Moran, N.A.6
Quan, P.L.7
Briese, T.8
Hornig, M.9
Geiser, D.M.10
Martinson, V.11
VanEngelsdorp, D.12
Kalkstein, A.L.13
Drysdale, A.14
Hui, J.15
Zhai, J.H.16
Cui, L.W.17
Hutchison, S.K.18
Simons, J.F.19
Egholm, M.20
Pettis, J.S.21
Lipkin, W.I.22
more..
-
10
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology
-
Edwards, R.A., Rodriguez-Brito, B., Wegley, L., Haynes, M., Breitbart, M., Peterson, D.M., Saar, M.O., Alexander, S., Alexander, E.C, Jr. and Rohwer, F. (2006) Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics, 7 ,57.
-
(2006)
BMC Genomics
, vol.7
-
-
Edwards, R.A.1
Rodriguez-Brito, B.2
Wegley, L.3
Haynes, M.4
Breitbart, M.5
Peterson, D.M.6
Saar, M.O.7
Alexander, S.8
Alexander Jr., E.C.9
Rohwer, F.10
-
11
-
-
23144433640
-
-
Fauquet, C.M., Mayo, M.A., Maniloff, J., Desselberger, U. and Ball, L.A. (eds) San Diego, CA: Academic Press.
-
Fauquet, C.M., Mayo, M.A., Maniloff, J., Desselberger, U. and Ball, L.A. (eds) (2005) 8th Report of the International Committee on Taxonomy of Viruses. San Diego, CA: Academic Press.
-
(2005)
8th Report of the International Committee on Taxonomy of Viruses
-
-
-
12
-
-
69249118591
-
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil
-
Fierer, N., Breitbart, M., Nulton, J., Salamon, P., Lozupone, C., Jones, R., Robeson, M., Edwards, R.A., Felts, B., Rayhawk, S., Knight, R., Rohwer, F. and Jackson, R. B. (2007) Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Appl. Environ. Microbiol. 73, 7059-7066.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
-
-
Fierer, N.1
Breitbart, M.2
Nulton, J.3
Salamon, P.4
Lozupone, C.5
Jones, R.6
Robeson, M.7
Edwards, R.A.8
Felts, B.9
Rayhawk, S.10
Knight, R.11
Rohwer, F.12
Jackson, R.B.13
-
13
-
-
0031042947
-
A primer pair for amplifying part of the genome of all potyvirids by RT-PCR
-
Gibbs, A. and Mackenzie, A. (1997) A primer pair for amplifying part of the genome of all potyvirids by RT-PCR. J. Virol. Methods, 63, 9-16.
-
(1997)
J. Virol. Methods
, vol.63
-
-
Gibbs, A.1
Mackenzie, A.2
-
14
-
-
38849109468
-
Complete genomic RNA sequence of the Polish Pepino mosaic virus isolate belonging to the US2 strain
-
Hasiow, B., Borodynko, N. and Pospieszny, H. (2008) Complete genomic RNA sequence of the Polish Pepino mosaic virus isolate belonging to the US2 strain. Virus Genes, 36, 209-214.
-
(2008)
Virus Genes
, vol.36
-
-
Hasiow, B.1
Borodynko, N.2
Pospieszny, H.3
-
15
-
-
33847702910
-
MEGAN analysis of metagenomic data
-
Huson, D.H., Auch, A.F., Qi, J. and Schuster, S.C. (2007) MEGAN analysis of metagenomic data. Genome Res. 17, 377-386.
-
(2007)
Genome Res.
, vol.17
-
-
Huson, D.H.1
Auch, A.F.2
Qi, J.3
Schuster, S.C.4
-
16
-
-
33746557465
-
Strategies for simultaneous detection of multiple plant viruses
-
James, D., Varga, A., Pallas, V. and Candresse, T. (2006) Strategies for simultaneous detection of multiple plant viruses. Can. J. Plant Pathol. 28, 16-29.
-
(2006)
Can. J. Plant Pathol.
, vol.28
-
-
James, D.1
Varga, A.2
Pallas, V.3
Candresse, T.4
-
17
-
-
33750943160
-
The first report of Broad bean wilt virus 2 in the UK: Findings in foxglove and salvia
-
Mumford, R.A., Jarvis, B., Harju, V., Boonham, N. and Skelton, A. (2006) The first report of Broad bean wilt virus 2 in the UK: findings in foxglove and salvia. Plant Pathol. 55, 819.
-
(2006)
Plant Pathol.
, vol.55
-
-
Mumford, R.A.1
Jarvis, B.2
Harju, V.3
Boonham, N.4
Skelton, A.5
-
18
-
-
64149083137
-
Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach
-
Nakamura, S., Yang, CS., Sakon, N., Ueda, M., Tougan, T., Yamashita, A., Goto, N., Takahashi, K., Yasunaga, T., Ikuta, K., Mizutani, T., Okamoto, Y., Tagami, M., Morita, R., Maeda, N., Kawai, J., Hayashizaki, Y., Nagai, Y., Horii, T., lida, T. and Nakaya, T. (2009) Direct metagenomic detection of viral pathogens In nasal and fecal specimens using an unbiased high-throughput sequencing approach. PLoS ONE, 4, e4219.
-
(2009)
PLoS ONE
, vol.4
-
-
Nakamura, S.1
Yang, C.S.2
Sakon, N.3
Ueda, M.4
Tougan, T.5
Yamashita, A.6
Goto, N.7
Takahashi, K.8
Yasunaga, T.9
Ikuta, K.10
Mizutani, T.11
Okamoto, Y.12
Tagami, M.13
Morita, R.14
Maeda, N.15
Kawai, J.16
Hayashizaki, Y.17
Nagai, Y.18
Horii, T.19
Lida, T.20
Nakaya, T.21
more..
-
19
-
-
40449115382
-
A new arenavirus in a cluster of fatal transplant-associated diseases
-
Palacios, G., Druce, J., Du, L., Tran, T., Birch, C., Briese, T., Conlan, S., Quan, P.L., Hui, J., Marshall, J., Simons, J.F., Egholm, M., Paddock, C.D., Shieh, W.J., Goldsmith, C.S., Zaki, S.R., Catton, M. and Lipkin, W.l. (2008) A new arenavirus In a cluster of fatal transplant-associated diseases. N. Engl. J. Med. 358, 991-998.
-
(2008)
N. Engl. J. Med.
, vol.358
-
-
Palacios, G.1
Druce, J.2
Du, L.3
Tran, T.4
Birch, C.5
Briese, T.6
Conlan, S.7
Quan, P.L.8
Hui, J.9
Marshall, J.10
Simons, J.F.11
Egholm, M.12
Paddock, C.D.13
Shieh, W.J.14
Goldsmith, C.S.15
Zaki, S.R.16
Catton, M.17
Lipkin, W.L.18
-
20
-
-
0036250029
-
Genomic subtraction to Identify and characterize sequences of Shiga toxinproducing Escherichia coli O91:H21
-
Pradel, N., Leroy-Setrin, S., Joly, B. and Livrelli, V. (2002) Genomic subtraction to Identify and characterize sequences of Shiga toxinproducing Escherichia coli O91:H21.Appl. Environ. Microbiol. 68, 23162325.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
-
-
Pradel, N.1
Leroy-Setrin, S.2
Joly, B.3
Livrelli, V.4
-
21
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored 'rare biosphere'
-
Sogin, M.L., Morrison, H.G., Huber, J.A, Mark, W.D., Huse, S.M., Neal, P.R., Arrieta, J.M. and Herndl, G.J. (2006) Microbial diversity In the deep sea and the underexplored 'rare biosphere'. Proc. Natl. Acad. Sci. USA, 103, 12115-12120.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Mark, W.D.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
22
-
-
2542546669
-
Black currant reversion virus, a mite-transmitted nepovirus
-
Susi, P. (2004). Black currant reversion virus, a mite-transmitted nepovirus. Mol. Plant Pathol. 5, 167-173.
-
(2004)
Mol. Plant Pathol.
, vol.5
-
-
Susi, P.1
-
23
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M. and Kumar, S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
24
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter, J.C, Remington, K., Heidelberg, J.F., Halpern, A.L., Rusch, D., Eisen, J.A., Wu, D., Paulsen, I., Nelson, K.E., Nelson, W., Fouts, D.E., Levy, S., Knap, A.H., Lomas, M.W., Nealson, K., White, O., Peterson, J., Hoffman, J., Parsons, R., Baden-Tillson, H., Pfannkoch, C., Rogers, Y.H. and Smith, H.O. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science, 304, 66-74.
-
(2004)
Science
, vol.304
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
Fouts, D.E.11
Levy, S.12
Knap, A.H.13
Lomas, M.W.14
Nealson, K.15
White, O.16
Peterson, J.17
Hoffman, J.18
Parsons, R.19
Baden-Tillson, H.20
Pfannkoch, C.21
Rogers, Y.H.22
Smith, H.O.23
more..
-
25
-
-
44849140662
-
The Sorcerer II Global Ocean Sampling Expedition: Metagenomic characterization of viruses within aquatic microbial samples
-
Williamson, S.J., Rusch, D.B, Yooseph, S., Halpern, A.L., Heidelberg, K.B, Glass, J.I., Andrews-Pfannkoch, C., Fadrosh, D., Miller, C.S., Sutton, G., Frazier, M. and Venter, J.C. (2008) The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples. PLoS ONE, 3, e1456.
-
(2008)
PLoS ONE
, vol.3
-
-
Williamson, S.J.1
Rusch, D.B.2
Yooseph, S.3
Halpern, A.L.4
Heidelberg, K.B.5
Glass, J.I.6
Andrews-Pfannkoch, C.7
Fadrosh, D.8
Miller, C.S.9
Sutton, G.10
Frazier, M.11
Venter, J.C.12
-
26
-
-
31144459030
-
RNA viral community in human feces: Prevalence of plant pathogenic viruses
-
Zhang, T., Breitbart, M., Lee, W.H., Run, J.Q., Wei, C.L., Soh, S.W., Hibberd, M.L., Liu, E.T., Rohwer, F. and Ruan, Y (2006) RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol. 4, e3.
-
(2006)
PLoS Biol.
, vol.4
-
-
Zhang, T.1
Breitbart, M.2
Lee, W.H.3
Run, J.Q.4
Wei, C.L.5
Soh, S.W.6
Hibberd, M.L.7
Liu, E.T.8
Rohwer, F.9
Ruan, Y.10
|