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Volumn 10, Issue 10, 2009, Pages

Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; OLIGONUCLEOTIDE; TRANSCRIPTOME; MESSENGER RNA; ONCOPROTEIN;

EID: 75349100601     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2009-10-10-r115     Document Type: Article
Times cited : (167)

References (36)
  • 1
    • 44849092474 scopus 로고    scopus 로고
    • The new paradigm of flow cell sequencing.
    • 10.1101/gr.073262.107, 18519653
    • Holt RA, Jones SJ. The new paradigm of flow cell sequencing. Genome Res 2008, 18:839-846. 10.1101/gr.073262.107, 18519653.
    • (2008) Genome Res , vol.18 , pp. 839-846
    • Holt, R.A.1    Jones, S.J.2
  • 2
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics.
    • 10.1038/nrg2484, 19015660
    • Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009, 10:57-63. 10.1038/nrg2484, 19015660.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 6
    • 33947393565 scopus 로고    scopus 로고
    • Mapping the cancer genome: pinpointing the genes involved in cancer will help chart a new course across the complex landscape of human malignancies.
    • 10.1038/scientificamerican0307-50, 17348159
    • Collins FS, Barker AD. Mapping the cancer genome: pinpointing the genes involved in cancer will help chart a new course across the complex landscape of human malignancies. Sci Am 2007, 296:50-57. 10.1038/scientificamerican0307-50, 17348159.
    • (2007) Sci Am , vol.296 , pp. 50-57
    • Collins, F.S.1    Barker, A.D.2
  • 7
    • 84864819611 scopus 로고    scopus 로고
    • The Cancer Genome Atlas
    • The Cancer Genome Atlas. , http://cancergenome.nih.gov/
  • 8
    • 65249144557 scopus 로고    scopus 로고
    • Commonality but diversity in cancer gene fusions.
    • 10.1016/j.cell.2009.04.034, 19410533
    • Rabbitts TH. Commonality but diversity in cancer gene fusions. Cell 2009, 137:391-395. 10.1016/j.cell.2009.04.034, 19410533.
    • (2009) Cell , vol.137 , pp. 391-395
    • Rabbitts, T.H.1
  • 12
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq.
    • 10.1038/nmeth.1226, 18516045
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5:621-628. 10.1038/nmeth.1226, 18516045.
    • (2008) Nat Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 15
    • 48249090463 scopus 로고    scopus 로고
    • A comprehensive assay for targeted multiplex amplification of human DNA sequences.
    • 2442818, 18599465, 10.1073/pnas.0803240105
    • Krishnakumar S, Zheng J, Wilhelmy J, Faham M, Mindrinos M, Davis R. A comprehensive assay for targeted multiplex amplification of human DNA sequences. Proc Natl Acad Sci USA 2008, 105:9296-9301. 2442818, 18599465, 10.1073/pnas.0803240105.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 9296-9301
    • Krishnakumar, S.1    Zheng, J.2    Wilhelmy, J.3    Faham, M.4    Mindrinos, M.5    Davis, R.6
  • 16
    • 67349179787 scopus 로고    scopus 로고
    • Massively parallel exon capture and library-free resequencing across 16 genomes.
    • 2703445, 19349981, 10.1038/nmeth.f.248
    • Turner EH, Lee C, Ng SB, Nickerson DA, Shendure J. Massively parallel exon capture and library-free resequencing across 16 genomes. Nat Methods 2009, 6:315-316. 2703445, 19349981, 10.1038/nmeth.f.248.
    • (2009) Nat Methods , vol.6 , pp. 315-316
    • Turner, E.H.1    Lee, C.2    Ng, S.B.3    Nickerson, D.A.4    Shendure, J.5
  • 17
    • 35748959649 scopus 로고    scopus 로고
    • Microarray-based genomic selection for high-throughput resequencing.
    • 10.1038/nmeth1109, 17934469
    • Okou DT, Steinberg KM, Middle C, Cutler DJ, Albert TJ, Zwick ME. Microarray-based genomic selection for high-throughput resequencing. Nat Methods 2007, 4:907-909. 10.1038/nmeth1109, 17934469.
    • (2007) Nat Methods , vol.4 , pp. 907-909
    • Okou, D.T.1    Steinberg, K.M.2    Middle, C.3    Cutler, D.J.4    Albert, T.J.5    Zwick, M.E.6
  • 23
    • 0029042707 scopus 로고
    • Extensive amplification of bcr/abl fusion genes clustered on three marker chromosomes in human leukemic cell line K-562.
    • Wu SQ, Voelkerding KV, Sabatini L, Chen XR, Huang J, Meisner LF. Extensive amplification of bcr/abl fusion genes clustered on three marker chromosomes in human leukemic cell line K-562. Leukemia 1995, 9:858-862.
    • (1995) Leukemia , vol.9 , pp. 858-862
    • Wu, S.Q.1    Voelkerding, K.V.2    Sabatini, L.3    Chen, X.R.4    Huang, J.5    Meisner, L.F.6
  • 25
    • 67749120442 scopus 로고    scopus 로고
    • SET-NUP214 fusion in acute myeloid leukemia- and T-cell acute lymphoblastic leukemia-derived cell lines.
    • 2636835, 19166587, 10.1186/1756-8722-2-3
    • Quentmeier H, Schneider B, Rohrs S, Romani J, Zaborski M, Macleod RA, Drexler HG. SET-NUP214 fusion in acute myeloid leukemia- and T-cell acute lymphoblastic leukemia-derived cell lines. J Hematol Oncol 2009, 2:3. 2636835, 19166587, 10.1186/1756-8722-2-3.
    • (2009) J Hematol Oncol , vol.2 , pp. 3
    • Quentmeier, H.1    Schneider, B.2    Rohrs, S.3    Romani, J.4    Zaborski, M.5    Macleod, R.A.6    Drexler, H.G.7
  • 26
    • 67649631522 scopus 로고    scopus 로고
    • Filter-based hybridization capture of subgenomes enables resequencing and copy-number detection.
    • 10.1038/nmeth.1343, 19543287
    • Herman DS, Hovingh GK, Iartchouk O, Rehm HL, Kucherlapati R, Seidman JG, Seidman CE. Filter-based hybridization capture of subgenomes enables resequencing and copy-number detection. Nat Methods 2009, 6:507-510. 10.1038/nmeth.1343, 19543287.
    • (2009) Nat Methods , vol.6 , pp. 507-510
    • Herman, D.S.1    Hovingh, G.K.2    Iartchouk, O.3    Rehm, H.L.4    Kucherlapati, R.5    Seidman, J.G.6    Seidman, C.E.7
  • 27
    • 51149114001 scopus 로고    scopus 로고
    • A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells.
    • 10.1126/science.1156725, 18772439
    • Li H, Wang J, Mor G, Sklar J. A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells. Science 2008, 321:1357-1361. 10.1126/science.1156725, 18772439.
    • (2008) Science , vol.321 , pp. 1357-1361
    • Li, H.1    Wang, J.2    Mor, G.3    Sklar, J.4
  • 28
    • 66349122954 scopus 로고    scopus 로고
    • Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing.
    • 10.1126/science.1170995, 19478186
    • Li JB, Levanon EY, Yoon JK, Aach J, Xie B, Leproust E, Zhang K, Gao Y, Church GM. Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing. Science 2009, 324:1210-1213. 10.1126/science.1170995, 19478186.
    • (2009) Science , vol.324 , pp. 1210-1213
    • Li, J.B.1    Levanon, E.Y.2    Yoon, J.K.3    Aach, J.4    Xie, B.5    Leproust, E.6    Zhang, K.7    Gao, Y.8    Church, G.M.9
  • 30
    • 0028049832 scopus 로고
    • Construction and characterization of a normalized cDNA library.
    • 44785, 7937745, 10.1073/pnas.91.20.9228
    • Soares MB, Bonaldo MF, Jelene P, Su L, Lawton L, Efstratiadis A. Construction and characterization of a normalized cDNA library. Proc Natl Acad Sci USA 1994, 91:9228-9232. 44785, 7937745, 10.1073/pnas.91.20.9228.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9228-9232
    • Soares, M.B.1    Bonaldo, M.F.2    Jelene, P.3    Su, L.4    Lawton, L.5    Efstratiadis, A.6
  • 32
    • 76349091176 scopus 로고    scopus 로고
    • Broad Institute Targeted RNA-Seq Sequence Data
    • Broad Institute Targeted RNA-Seq Sequence Data. , http://www.broad.mit.edu/annotation/cDNA/cDNA.html
  • 33
    • 76349104642 scopus 로고    scopus 로고
    • NCBI RefSeq Human mRNA FTP site
    • NCBI RefSeq Human mRNA FTP site. , ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/
  • 36
    • 0034831138 scopus 로고    scopus 로고
    • Segmental duplications: organization and impact within the current human genome project assembly.
    • 311093, 11381028, 10.1101/gr.GR-1871R
    • Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE. Segmental duplications: organization and impact within the current human genome project assembly. Genome Res 2001, 11:1005-1017. 311093, 11381028, 10.1101/gr.GR-1871R.
    • (2001) Genome Res , vol.11 , pp. 1005-1017
    • Bailey, J.A.1    Yavor, A.M.2    Massa, H.F.3    Trask, B.J.4    Eichler, E.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.