-
1
-
-
84866692796
-
A phylogenetic comparative method for studying multivariate adaptation
-
Bartoszek K., Pienaar J., Mostad P., Andersson S., Hansen T.F. 2012. A phylogenetic comparative method for studying multivariate adaptation. J. Theor. Biolog. 314:204-215.
-
(2012)
J. Theor. Biolog.
, vol.314
, pp. 204-215
-
-
Bartoszek, K.1
Pienaar, J.2
Mostad, P.3
Andersson, S.4
Hansen, T.F.5
-
2
-
-
84864320749
-
Modeling stabilizing selection: Expanding the Ornstein-ühlenbeck model of adaptive evolution
-
Beaulieu J.M., Jhwueng D.-C., Boettiger C., O'Meara B.C. 2012. Modeling stabilizing selection: Expanding the Ornstein-Ühlenbeck model of adaptive evolution. Evolution 66:2369-2383.
-
(2012)
Evolution
, vol.66
, pp. 2369-2383
-
-
Beaulieu, J.M.1
Jhwueng, D.-C.2
Boettiger, C.3
O'meara, B.C.4
-
3
-
-
34047108602
-
The delayed rise of present-daymammals
-
Bininda-Emonds O., Cardillo M., Jones K.E., MacPhee R.D.E., Beck R.M.D., Grenyer R., Price S.A., Vos R.A., Gittleman J.L., Purvis A. 2007. The delayed rise of present-daymammals.Nature 446:507-512.
-
(2007)
Nature
, vol.446
, pp. 507-512
-
-
Bininda-Emonds, O.1
Cardillo, M.2
Jones, K.E.3
MacPhee, R.D.E.4
Beck, R.M.D.5
Grenyer, R.6
Price, S.A.7
Vos, R.A.8
Gittleman, J.L.9
Purvis, A.10
-
4
-
-
0038325772
-
Testing for phylogenetic signal in comparative data: Behavioral traits are more labile
-
Blomberg S.P., Garland T. Jr., Ives A.R. 2003. Testing for phylogenetic signal in comparative data: Behavioral traits are more labile. Evolution 57:717-745.
-
(2003)
Evolution
, vol.57
, pp. 717-745
-
-
Blomberg, S.P.1
Garland Jr., T.2
Ives, A.R.3
-
5
-
-
84863435149
-
Is your phylogeny informativé measuring the power of comparative methods
-
Boettiger C., Coop G., Ralph P. 2012. Is your phylogeny informativé measuring the power of comparative methods. Evolution 66:2240-2251.
-
(2012)
Evolution
, vol.66
, pp. 2240-2251
-
-
Boettiger, C.1
Coop, G.2
Ralph, P.3
-
6
-
-
80054976678
-
The evolution of gene expression levels in mammalian organs
-
Brawand D., Soumillon M., Necsulea A., Julien P., Csardi G., Harrigan P., Weier M., Liechti A., Aximu-Petri A., Kircher M., Albert F.W., Zeller U., Khaitovich P., Grutzner F., Bergmann S., Nielsen R., Pääbo S., Kaessmann H. 2011. The evolution of gene expression levels in mammalian organs. Nature 478:343-348.
-
(2011)
Nature
, vol.478
, pp. 343-348
-
-
Brawand, D.1
Soumillon, M.2
Necsulea, A.3
Julien, P.4
Csardi, G.5
Harrigan, P.6
Weier, M.7
Liechti, A.8
Aximu-Petri, A.9
Kircher, M.10
Albert, F.W.11
Zeller, U.12
Khaitovich, P.13
Grutzner, F.14
Bergmann, S.15
Nielsen, R.16
Pääbo, S.17
Kaessmann, H.18
-
7
-
-
11944264347
-
Phylogenetic comparative analysis: A modeling approach for adaptive evolution
-
Butler M.A., King A.A. 2004. Phylogenetic comparative analysis: A modeling approach for adaptive evolution. Am. Nat. 164:683-695.
-
(2004)
Am. Nat.
, vol.164
, pp. 683-695
-
-
Butler, M.A.1
King, A.A.2
-
8
-
-
80052641562
-
A test of taxonomic and biogeographic predictivity: Resistance to potato virus y in wild relatives of the cultivated potato
-
Cai X.K., Spooner D.M., Jansky S.H. 2011. A test of taxonomic and biogeographic predictivity: Resistance to potato virus Y in wild relatives of the cultivated potato. Phytopathology 101:1074-1080.
-
(2011)
Phytopathology
, vol.101
, pp. 1074-1080
-
-
Cai, X.K.1
Spooner, D.M.2
Jansky, S.H.3
-
9
-
-
77952037303
-
Body size evolution in mammals: Complexity in tempo and mode
-
Cooper N., Purvis A. 2010. Body size evolution in mammals: Complexity in tempo and mode. Am. Nat. 175:727-738.
-
(2010)
Am. Nat.
, vol.175
, pp. 727-738
-
-
Cooper, N.1
Purvis, A.2
-
12
-
-
82855161365
-
A novel comparative method for identifying shifts in the rate of character evolution on trees
-
Eastman J.M., Alfaro M.E., Joyce P., Hipp A.L., Harmon L.J. 2011. A novel comparative method for identifying shifts in the rate of character evolution on trees. Evolution 65:3578-3589.
-
(2011)
Evolution
, vol.65
, pp. 3578-3589
-
-
Eastman, J.M.1
Alfaro, M.E.2
Joyce, P.3
Hipp, A.L.4
Harmon, L.J.5
-
13
-
-
0015808083
-
Maximum-likelihood estimation of evolutionary trees from continuous characters
-
Felsenstein J. 1973. Maximum-likelihood estimation of evolutionary trees from continuous characters. Am. J. Hum. Genet. 25:471-492.
-
(1973)
Am. J. Hum. Genet.
, vol.25
, pp. 471-492
-
-
Felsenstein, J.1
-
14
-
-
43949115169
-
Comparative methods with sampling error and withinspecies variation: Contrasts revisited and revised
-
Felsenstein J. 2008. Comparative methods with sampling error and withinspecies variation: Contrasts revisited and revised. Am. Nat. 171:713-725.
-
(2008)
Am. Nat.
, vol.171
, pp. 713-725
-
-
Felsenstein, J.1
-
15
-
-
84871008957
-
Diversitree: Comparative phylogenetic analyses of diversification in R
-
FitzJohn R. 2012. Diversitree: Comparative phylogenetic analyses of diversification in R. Methods Ecol. Evol. 3:1084-1092.
-
(2012)
Methods Ecol. Evol.
, vol.3
, pp. 1084-1092
-
-
Fitzjohn, R.1
-
16
-
-
84875271870
-
Fast likelihood calculations for comparative analyses
-
Freckleton R. 2012. Fast likelihood calculations for comparative analyses. Methods Ecol. Evol. 3:940-947.
-
(2012)
Methods Ecol. Evol.
, vol.3
, pp. 940-947
-
-
Freckleton, R.1
-
17
-
-
33751064527
-
Detecting non-brownian trait evolution in adaptive radiations
-
Freckleton R.P., Harvey P.H. 2006. Detecting non-brownian trait evolution in adaptive radiations. PLoS Biol. 4:e373.
-
(2006)
PLoS Biol.
, vol.4
-
-
Freckleton, R.P.1
Harvey, P.H.2
-
19
-
-
0034001912
-
Using the past to predict the present: Confidence intervals for regression equations in phylogenetic comparative methods
-
Garland T. Jr., Ives A.R. 2000. Using the past to predict the present: Confidence intervals for regression equations in phylogenetic comparative methods. Am. Nat. 155:346-364.
-
(2000)
Am. Nat.
, vol.155
, pp. 346-364
-
-
Garland Jr., T.1
Ives, A.R.2
-
20
-
-
84858593012
-
The iplant collaborative: Cyberinfrastructure for plant biology
-
Goff S.A., Vaughn M., McKay S., Lyons E., Stapleton A.E., Gessler D., Matasci N., Wang L., Hanlon M., Lenards A., Muir A., Merchant N., Lowry S., Mock S., Helmke M., Kubach A., Narro M., Hopkins N., Micklos D., Hilgert U., Gonzales M., Jordan C., Skidmore E., Dooley R., Cazes J., McLay R., Lu Z., Pasternak S., Koesterke L., Piel W.H., Grene R., Noutsos C., Gendler K., Feng X., Tang C., Lent M., Kim S.-J., Kvilekval K., Manjunath B.S., Tannen V., Stamatakis A., Sanderson M., Welch S., Cranston K., Soltis P., Soltis D., O'Meara B., An C., Brutnell T., Kleibenstein D.J., White J.W., Leebens-Mack J., Donoghue M.J., Spalding E.P., Vision T.J., Myers C.R., Lowenthal D., Enquist B.J., Boyle B., Akoglu A., Andrews G., Ram S., Ware D., Stein L., Stanzione D. 2011. The iplant collaborative: Cyberinfrastructure for plant biology. Front. Plant Sci. 2.
-
(2011)
Front. Plant Sci.
, pp. 2
-
-
Goff, S.A.1
Vaughn, M.2
McKay, S.3
Lyons, E.4
Stapleton, A.E.5
Gessler, D.6
Matasci, N.7
Wang, L.8
Hanlon, M.9
Lenards, A.10
Muir, A.11
Merchant, N.12
Lowry, S.13
Mock, S.14
Helmke, M.15
Kubach, A.16
Narro, M.17
Hopkins, N.18
Micklos, D.19
Hilgert, U.20
Gonzales, M.21
Jordan, C.22
Skidmore, E.23
Dooley, R.24
Cazes, J.25
McLay, R.26
Lu, Z.27
Pasternak, S.28
Koesterke, L.29
Piel, W.H.30
Grene, R.31
Noutsos, C.32
Gendler, K.33
Feng, X.34
Tang, C.35
Lent, M.36
Kim, S.-J.37
Kvilekval, K.38
Manjunath, B.S.39
Tannen, V.40
Stamatakis, A.41
Sanderson, M.42
Welch, S.43
Cranston, K.44
Soltis, P.45
Soltis, D.46
O'meara, B.47
An, C.48
Brutnell, T.49
Kleibenstein, D.J.50
White, J.W.51
Leebens-Mack, J.52
Donoghue, M.J.53
Spalding, E.P.54
Vision, T.J.55
Myers, C.R.56
Lowenthal, D.57
Enquist, B.J.58
Boyle, B.59
Akoglu, A.60
Andrews, G.61
Ram, S.62
Ware, D.63
Stein, L.64
Stanzione, D.65
more..
-
21
-
-
0000967948
-
Best linear unbiased prediction in the generalized linear regression model
-
Goldberger A.S. 1962. Best linear unbiased prediction in the generalized linear regression model. J. Am. Stat. Assoc. 57: 369-375.
-
(1962)
J. Am. Stat. Assoc.
, vol.57
, pp. 369-375
-
-
Goldberger, A.S.1
-
23
-
-
77749249761
-
MCMC methods formulti-response generalized linear mixed models: TheMCMC glmmRpackage
-
Hadfield J. 2010.MCMCmethods formulti-response generalized linear mixed models: TheMCMCglmmRpackage. J. Stat. Software 33:1-22.
-
(2010)
J. Stat. Software
, vol.33
, pp. 1-22
-
-
Hadfield, J.1
-
24
-
-
77749279661
-
General quantitative genetic methods for comparative biology: Phylogenies, taxonomies and multi-Trait models for continuous and categorical characters
-
Hadfield J.D., Nakagawa S. 2010. General quantitative genetic methods for comparative biology: Phylogenies, taxonomies and multi-Trait models for continuous and categorical characters. J. Evol. Biol. 23:494-508.
-
(2010)
J. Evol. Biol.
, vol.23
, pp. 494-508
-
-
Hadfield, J.D.1
Nakagawa, S.2
-
25
-
-
0024682770
-
Updating the inverse of amatrix
-
Hager W. 1989. Updating the inverse of amatrix. SIAM Rev. 31:221-239.
-
(1989)
SIAM Rev.
, vol.31
, pp. 221-239
-
-
Hager, W.1
-
26
-
-
0030772835
-
Stabilizing selection and the comparative analysis of adaptation
-
Hansen T.F. 1997. Stabilizing selection and the comparative analysis of adaptation. Evolution 51:1341-1351.
-
(1997)
Evolution
, vol.51
, pp. 1341-1351
-
-
Hansen, T.F.1
-
27
-
-
84859443677
-
Interpreting the evolutionary regression: The interplay between observational and biological errors in phylogenetic comparative studies
-
Hansen T.F., Bartoszek K. 2012. Interpreting the evolutionary regression: The interplay between observational and biological errors in phylogenetic comparative studies. Syst. Biol. 61:413-425.
-
(2012)
Syst. Biol.
, vol.61
, pp. 413-425
-
-
Hansen, T.F.1
Bartoszek, K.2
-
28
-
-
77952051550
-
Early bursts of body size and shape evolution are rare in comparative data
-
Harmon L.J., Losos J.B., Jonathan Davies T., Gillespie R.G., Gittleman J.L., Bryan Jennings W., Kozak K.H., McPeek M.A., Moreno-Roark F., Near T.J., Purvis A., Ricklefs R.E., Schluter D., Schulte J.A. II, Seehausen O., Sidlauskas B.L., Torres-Carvajal O., Weir J.T., Mooers A. 2010. Early bursts of body size and shape evolution are rare in comparative data. Evolution 64:2385-2396.
-
(2010)
Evolution
, vol.64
, pp. 2385-2396
-
-
Harmon, L.J.1
Losos, J.B.2
Jonathan Davies, T.3
Gillespie, R.G.4
Gittleman, J.L.5
Bryan Jennings, W.6
Kozak, K.H.7
McPeek, M.A.8
Moreno-Roark, F.9
Near, T.J.10
Purvis, A.11
Ricklefs, R.E.12
Schluter, D.13
Schulte, I.I.J.A.14
Seehausen, O.15
Sidlauskas, B.L.16
Torres-Carvajal, O.17
Weir, J.T.18
Mooers, A.19
-
29
-
-
84879163204
-
Asymptotic theory with hierarchical autocorrelation: Ornstein-uhlenbeck tree models
-
Ho L.S.T., Ané C. 2013. Asymptotic theory with hierarchical autocorrelation: Ornstein-uhlenbeck tree models. Annals Stat. 41:957-981.
-
(2013)
Annals Stat.
, vol.41
, pp. 957-981
-
-
Ho, L.S.T.1
Ané, C.2
-
30
-
-
80051532520
-
Generalized linear mixed models for phylogenetic analyses of community structure
-
Ives A., Helmus M. 2011. Generalized linear mixed models for phylogenetic analyses of community structure. Ecol. Monographs 81:511-525.
-
(2011)
Ecol. Monographs
, vol.81
, pp. 511-525
-
-
Ives, A.1
Helmus, M.2
-
31
-
-
72049108111
-
Phylogenetic logistic regression for binary dependent variables
-
Ives A.R., Garland T. Jr. 2010. Phylogenetic logistic regression for binary dependent variables. Syst. Biol. 59:9-26.
-
(2010)
Syst. Biol.
, vol.59
, pp. 9-26
-
-
Ives, A.R.1
Garland Jr., T.2
-
32
-
-
34447280382
-
Within-species variation and measurement error in phylogenetic comparativemethods
-
Ives A.R., Midford P.E., Garland T. Jr. 2007. Within-species variation and measurement error in phylogenetic comparativemethods. Syst. Biol. 56:252-270.
-
(2007)
Syst. Biol.
, vol.56
, pp. 252-270
-
-
Ives, A.R.1
Midford, P.E.2
Garland Jr., T.3
-
33
-
-
84869088692
-
The global diversity of birds in space and time
-
Jetz W., Thomas G., Joy J., Hartmann K., Mooers A. 2012. The global diversity of birds in space and time. Nature 491:444-448.
-
(2012)
Nature
, vol.491
, pp. 444-448
-
-
Jetz, W.1
Thomas, G.2
Joy, J.3
Hartmann, K.4
Mooers, A.5
-
35
-
-
84871700438
-
In and out of africa: How did the strait of gibraltar affect plant species migration and local diversification?
-
Lavergne S., Hampe A., Arroyo J. 2013. In and out of africa: How did the strait of gibraltar affect plant species migration and local diversification? J. Biogeography 40:24-36.
-
(2013)
J Biogeography
, vol.40
, pp. 24-36
-
-
Lavergne, S.1
Hampe, A.2
Arroyo, J.3
-
38
-
-
0026293261
-
Methods for the analysis of comparative data in evolutionary biology
-
Lynch M. 1991. Methods for the analysis of comparative data in evolutionary biology. Evolution 45:1065-1080.
-
(1991)
Evolution
, vol.45
, pp. 1065-1080
-
-
Lynch, M.1
-
39
-
-
0030619995
-
Phylogenies and the comparative method: A general approach to incorporating phylogenetic information into the analysis of interspecific data
-
Martins E.P., Hansen T.F. 1997. Phylogenies and the comparative method: A general approach to incorporating phylogenetic information into the analysis of interspecific data. Am.Nat. 149:646-667.
-
(1997)
Am.Nat.
, vol.149
, pp. 646-667
-
-
Martins, E.P.1
Hansen, T.F.2
-
40
-
-
79960767356
-
Phylogenetic versus functional signals in the evolution of form-function relationships in terrestrial vision
-
Motani R., Schmitz L. 2011. Phylogenetic versus functional signals in the evolution of form-function relationships in terrestrial vision. Evolution 65:2245-2257.
-
(2011)
Evolution
, vol.65
, pp. 2245-2257
-
-
Motani, R.1
Schmitz, L.2
-
41
-
-
33747056328
-
Testing for different rates of continuous trait evolution using likelihood
-
O'Meara B.C., Ané C., Sanderson M.J., Wainwright P.C. 2006. Testing for different rates of continuous trait evolution using likelihood. Evolution 60:922-933.
-
(2006)
Evolution
, vol.60
, pp. 922-933
-
-
O'meara, B.C.1
Ané, C.2
Sanderson, M.J.3
Wainwright, P.C.4
-
42
-
-
0031421806
-
Inferring evolutionary processes from phylogenies
-
Pagel M. 1997. Inferring evolutionary processes from phylogenies. Zoologica Scripta 26:331-348.
-
(1997)
Zoologica Scripta
, vol.26
, pp. 331-348
-
-
Pagel, M.1
-
43
-
-
0033613376
-
Inferring the historical patterns of biological evolution
-
Pagel M. 1999. Inferring the historical patterns of biological evolution. Nature 401:877-884.
-
(1999)
Nature
, vol.401
, pp. 877-884
-
-
Pagel, M.1
-
44
-
-
0036402267
-
Analysis of comparative data using generalized estimating equations
-
Paradis E., Claude J. 2002. Analysis of comparative data using generalized estimating equations. J. Theor. Biol. 218:175-185.
-
(2002)
J. Theor. Biol.
, vol.218
, pp. 175-185
-
-
Paradis, E.1
Claude, J.2
-
45
-
-
70350280178
-
Size-correction and principal components for interspecific comparative studies
-
Revell L.J. 2009. Size-correction and principal components for interspecific comparative studies. Evolution 63:3258-3268.
-
(2009)
Evolution
, vol.63
, pp. 3258-3268
-
-
Revell, L.J.1
-
46
-
-
41349095584
-
Testing quantitative genetic hypotheses about the evolutionary rate matrix for continuous characters
-
Revell L.J., Harmon L.J. 2008. Testing quantitative genetic hypotheses about the evolutionary rate matrix for continuous characters. Evol. Ecol. Res. 10:311-331.
-
(2008)
Evol. Ecol. Res.
, vol.10
, pp. 311-331
-
-
Revell, L.J.1
Harmon, L.J.2
-
47
-
-
84855283706
-
A new phylogenetic method for identifying exceptional phenotypic diversification
-
Revell L.J., Mahler D.L., Peres-Neto P.R., Redelings B.D. 2012. A new phylogenetic method for identifying exceptional phenotypic diversification. Evolution 66:135-146.
-
(2012)
Evolution
, vol.66
, pp. 135-146
-
-
Revell, L.J.1
Mahler, D.L.2
Peres-Neto, P.R.3
Redelings, B.D.4
-
48
-
-
84865709842
-
A new Bayesian method for fitting evolutionary models to comparative data with intraspecific variation
-
Revell L.J., Reynolds R.G. 2012. A new Bayesian method for fitting evolutionary models to comparative data with intraspecific variation. Evolution 66:2697-2707.
-
(2012)
Evolution
, vol.66
, pp. 2697-2707
-
-
Revell, L.J.1
Reynolds, R.G.2
-
49
-
-
84899014153
-
-
No 24 in Oxford Lecture Series in Mathematics and its Applications New York: Oxford University Press Smith S.A., Donoghue M.J. 2008. Rates of molecular evolution are linked to life history in flowering plants. Science
-
Semple C., Steel M. 2003. Phylogenetics. No. 24 in Oxford Lecture Series in Mathematics and its Applications New York: Oxford University Press Smith S.A., Donoghue M.J. 2008. Rates of molecular evolution are linked to life history in flowering plants. Science 322:86-89.
-
(2003)
Phylogenetics.
, vol.322
, pp. 86-89
-
-
Semple, C.1
Steel, M.2
-
50
-
-
33747174297
-
Comparative analyses of the influence of developmental mode on phenotypic diversification rates in shorebirds
-
Thomas G.H., Freckleton R.P., Székely T. 2006.Comparative analyses of the influence of developmental mode on phenotypic diversification rates in shorebirds. Proc. R. Soc. B: Biol. Sci. 273:1619-1624.
-
(2006)
Proc. R. Soc. B: Biol. Sci.
, vol.273
, pp. 1619-1624
-
-
Thomas, G.H.1
Freckleton, R.P.2
Székely, T.3
-
51
-
-
81555202533
-
Multiple routes to mammalian diversity
-
Venditti C., Meade A., Pagel M. 2011. Multiple routes to mammalian diversity. Nature 479:393-396.
-
(2011)
Nature
, vol.479
, pp. 393-396
-
-
Venditti, C.1
Meade, A.2
Pagel, M.3
|