메뉴 건너뛰기




Volumn 9, Issue 4, 2014, Pages

Kruppel like factor 4 promoter undergoes active demethylation during monocyte/macrophage differentiation

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATION INDUCED CYTIDINE DEAMINASE; ALKALINE PHOSPHATASE; CYTOSINE DEAMINASE; GROWTH ARREST AND DNA DAMAGE INDUCIBLE PROTEIN 45; GROWTH ARREST AND DNA DAMAGE INDUCIBLE PROTEIN 45 ALPHA; KRUPPEL LIKE FACTOR 4; METHYL CPG BINDING PROTEIN; METHYL CPG BINDING PROTEIN 4; THYMINE DNA GLYCOSYLASE; TRANSCRIPTION FACTOR GATA 1; TRANSCRIPTION FACTOR GATA 2; TRANSCRIPTION FACTOR PU 1; UNCLASSIFIED DRUG; CYTIDINE DEAMINASE; KRUPPEL LIKE FACTOR;

EID: 84898844105     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0093362     Document Type: Article
Times cited : (30)

References (47)
  • 1
    • 0034982567 scopus 로고    scopus 로고
    • Transcription factors that regulate growth and differentiation of myeloid cells
    • Nagamura-Inoue T, Tamura T, Ozato K (2001) Transcription factors that regulate growth and differentiation of myeloid cells. Int Rev Immunol 20: 83-105. (Pubitemid 32500867)
    • (2001) International Reviews of Immunology , vol.20 , Issue.1 , pp. 83-105
    • Nagamura-Inoue, T.1    Tamura, T.2    Ozato, K.3
  • 2
    • 0031907329 scopus 로고    scopus 로고
    • Role of PU.1 in hematopoiesis
    • Fisher RC, Scott EW (1998) Role of PU.1 in hematopoiesis. Stem Cells 16: 25-37. (Pubitemid 28065328)
    • (1998) Stem Cells , vol.16 , Issue.1 , pp. 25-37
    • Fisher, R.C.1    Scott, E.W.2
  • 4
    • 0028136726 scopus 로고
    • Requirement of transcription factor PU.1 in the development of multiple hematopoietic lineages
    • EW, Simon MC, Anastasi J, Singh H (1994) Requirement of transcription factor PU.1 in the development of multiple hematopoietic lineages. Science 265: 1573-1577.
    • (1994) Science , vol.265 , pp. 1573-1577
    • E, W.1    Simon, M.C.2    Anastasi, J.3    Singh, H.4
  • 6
    • 0347383861 scopus 로고    scopus 로고
    • The importance of PU.1 concentration in hematopoietic lineage commitment and maturation
    • Dahl R, Simon MC (2003) The importance of PU.1 concentration in hematopoietic lineage commitment and maturation. Blood Cells Mol Dis 31: 229-33.
    • (2003) Blood Cells Mol Dis , vol.31 , pp. 229-233
    • Dahl, R.1    Simon, M.C.2
  • 8
    • 82955197387 scopus 로고    scopus 로고
    • Mast cell transcription factors- regulators of cell fate and phenotype
    • Tshori S, Nechushtan H (2012) Mast cell transcription factors- regulators of cell fate and phenotype. Biochim Biophys Acta 1822: 42-8.
    • (2012) Biochim Biophys Acta , vol.1822 , pp. 42-48
    • Tshori, S.1    Nechushtan, H.2
  • 9
    • 45949099415 scopus 로고    scopus 로고
    • Kruppel-like factor 4 is essential for inflammatory monocyte differentiation in vivo
    • Alder JK, Georgantas 3rd RW, Hildreth RL, Kaplan IM, Morisot S, et al. (2008) Kruppel-like factor 4 is essential for inflammatory monocyte differentiation in vivo. J Immunol 180: 5645-52.
    • (2008) J Immunol , vol.180 , pp. 5645-5652
    • Alder, J.K.1    Georgantas III, R.W.2    Hildreth, R.L.3    Kaplan, I.M.4    Morisot, S.5
  • 11
    • 78649455728 scopus 로고    scopus 로고
    • Role of Kruppel-like factors in leukocyte development, function, and disease
    • Cao Z, Sun X, Icli B, Wara AK, Feinberg MW (2010) Role of Kruppel-like factors in leukocyte development, function, and disease. Blood 116: 4404-14.
    • (2010) Blood , vol.116 , pp. 4404-4414
    • Cao, Z.1    Sun, X.2    Icli, B.3    Wara, A.K.4    Feinberg, M.W.5
  • 12
    • 80052260520 scopus 로고    scopus 로고
    • The structure of the Klf4 DNA-binding domain links to self-renewal and macrophage differentiation
    • Schuetz A, Nana D, Rose C, Zocher G, Milanovic M, et al. (2011) The structure of the Klf4 DNA-binding domain links to self-renewal and macrophage differentiation. Cell Mol Life Sci 68: 3121-31.
    • (2011) Cell Mol Life Sci , vol.68 , pp. 3121-3131
    • Schuetz, A.1    Nana, D.2    Rose, C.3    Zocher, G.4    Milanovic, M.5
  • 13
    • 84934440223 scopus 로고    scopus 로고
    • Gadd45 proteins: Key players of repair-mediated DNA demethylation
    • Schäfer A (2013) Gadd45 proteins: key players of repair-mediated DNA demethylation. Adv Exp Med Biol 793: 35-50.
    • (2013) Adv Exp Med Biol , vol.793 , pp. 35-50
    • Schäfer, A.1
  • 14
    • 77957659555 scopus 로고    scopus 로고
    • Cytidine deaminases: AIDing DNA demethylation?
    • Fritz EL, Papavasiliou FN (2010) Cytidine deaminases: AIDing DNA demethylation? Genes Dev 24:2107-14.
    • (2010) Genes Dev , vol.24 , pp. 2107-2114
    • Fritz, E.L.1    Papavasiliou, F.N.2
  • 15
    • 80355126514 scopus 로고    scopus 로고
    • Epigenetic reprogramming: Is deamination key to active DNA demethylation?
    • Teperek-Tkacz M, Pasque V, Gentsch G, Ferguson-Smith AC (2011) Epigenetic reprogramming: is deamination key to active DNA demethylation? Reproduction 142: 621-32.
    • (2011) Reproduction , vol.142 , pp. 621-632
    • Teperek-Tkacz, M.1    Pasque, V.2    Gentsch, G.3    Ferguson-Smith, A.C.4
  • 16
    • 84878260646 scopus 로고    scopus 로고
    • TETonic shift: Biological roles of TET proteins in DNA demethylation and transcription
    • Pastor WA, Aravind L, Rao A (2013) TETonic shift: biological roles of TET proteins in DNA demethylation and transcription. Nat Rev Mol Cell Biol. 14:341-56.
    • (2013) Nat Rev Mol Cell Biol , vol.14 , pp. 341-356
    • Pastor, W.A.1    Aravind, L.2    Rao, A.3
  • 17
  • 18
    • 73349104113 scopus 로고    scopus 로고
    • Active DNA demethylation mediated by DNA glycosylases
    • Zhu JK (2009) Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet 43: 143-66.
    • (2009) Annu Rev Genet , vol.43 , pp. 143-166
    • Zhu, J.K.1
  • 19
    • 66849119061 scopus 로고    scopus 로고
    • DNA excision repair proteins and Gadd45 as molecular players for active DNA demethylation
    • Ma DK, Guo JU, Ming GL, Song H (2009) DNA excision repair proteins and Gadd45 as molecular players for active DNA demethylation. Cell Cycle 8: 1526-31.
    • (2009) Cell Cycle , vol.8 , pp. 1526-1531
    • Ma, D.K.1    Guo, J.U.2    Ming, G.L.3    Song, H.4
  • 20
    • 79959937861 scopus 로고    scopus 로고
    • Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair
    • Cortellino S, Xu J, Sannai M, Moore R, Caretti E, et al. (2011) Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair. Cell 146: 67-79.
    • (2011) Cell , vol.146 , pp. 67-79
    • Cortellino, S.1    Xu, J.2    Sannai, M.3    Moore, R.4    Caretti, E.5
  • 21
    • 77249148019 scopus 로고    scopus 로고
    • Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency
    • Popp C, Dean W, Feng S, Cokus SJ, Andrews S, et al. (2010) Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature 463: 1101-5.
    • (2010) Nature , vol.463 , pp. 1101-1105
    • Popp, C.1    Dean, W.2    Feng, S.3    Cokus, S.J.4    Andrews, S.5
  • 22
    • 10644282845 scopus 로고    scopus 로고
    • Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: Implications for epigenetic reprogramming
    • DOI 10.1074/jbc.M407695200
    • Morgan HD, Dean W, Coker HA, Reik W, Petersen-Mahrt SK (2004) Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming. J Biol Chem 279: 52353-60. (Pubitemid 39656611)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.50 , pp. 52353-52360
    • Morgan, H.D.1    Dean, W.2    Coker, H.A.3    Reik, W.4    Petersen-Mahrt, S.K.5
  • 23
    • 77954313084 scopus 로고    scopus 로고
    • Genome-wide DNA demethylation in mammals
    • Sanz LA, Kota SK, Feil R (2010) Genome-wide DNA demethylation in mammals. Genome Biol 11: 110.
    • (2010) Genome Biol , vol.11 , pp. 110
    • Sanz, L.A.1    Kota, S.K.2    Feil, R.3
  • 24
    • 84880554318 scopus 로고    scopus 로고
    • Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA
    • Liu S, Wang J, Su Y, Guerrero C, Zeng Y, et al (2013) Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA. Nucleic Acids Res 41: 6421-9.
    • (2013) Nucleic Acids Res , vol.41 , pp. 6421-6429
    • Liu, S.1    Wang, J.2    Su, Y.3    Guerrero, C.4    Zeng, Y.5
  • 25
    • 84872268888 scopus 로고    scopus 로고
    • Nucleic acid modifications with epigenetic significance
    • Fu Y, He C (2012) Nucleic acid modifications with epigenetic significance. Curr Opin Chem Biol 16: 516-24.
    • (2012) Curr Opin Chem Biol , vol.16 , pp. 516-524
    • Fu, Y.1    He, C.2
  • 26
    • 84898770107 scopus 로고    scopus 로고
    • TET enzymatic oxidation of 5-methylcytosine, 5-hydroxymethylcytosine and 5-formylcytosine
    • pii: S1383-5718(13)00260-X. doi: 10.1016/j.mrgentox.2013.09.001. [Epub ahead of print] PubMed PMID: 24045206
    • Cadet J, Wagner JR (2013) TET enzymatic oxidation of 5-methylcytosine, 5-hydroxymethylcytosine and 5-formylcytosine. Mutat Res pii: S1383-5718(13)00260-X. doi: 10.1016/j.mrgentox.2013.09.001. [Epub ahead of print] PubMed PMID: 24045206.
    • (2013) Mutat Res
    • Cadet, J.1    Wagner, J.R.2
  • 27
    • 80052495940 scopus 로고    scopus 로고
    • Tet-mediated formation of 5-carboxymethylcytosine and its excision by TDG in mammalian DNA
    • He YF, Li BZ, Li Z, Liu P, Wang Y, et al. (2011) Tet-mediated formation of 5-carboxymethylcytosine and its excision by TDG in mammalian DNA. Science 333: 1303-1307.
    • (2011) Science , vol.333 , pp. 1303-1307
    • He, Y.F.1    Li, B.Z.2    Li, Z.3    Liu, P.4    Wang, Y.5
  • 28
    • 84866445722 scopus 로고    scopus 로고
    • Activation-induced cytidine deaminase alters the subcellular localization of Tet family proteins
    • doi: 10.1371/journal.pone.0045031. PubMed PMID: 23028748; PubMed Central PMCID: PMC3444495
    • Arioka Y, Watanabe A, Saito K, Yamada Y (2012) Activation-induced cytidine deaminase alters the subcellular localization of Tet family proteins. PLoS One 7: e45031. doi: 10.1371/journal.pone.0045031. PubMed PMID: 23028748; PubMed Central PMCID: PMC3444495.
    • (2012) PLoS One , vol.7
    • Arioka, Y.1    Watanabe, A.2    Saito, K.3    Yamada, Y.4
  • 29
    • 41949136533 scopus 로고    scopus 로고
    • GADD45A does not promote DNA demethylation
    • doi: 10.1371/journal.pgen.1000013. PubMed PMID:18369439; PubMed Central PMCID: PMC2265528
    • Jin SG, Guo C, Pfeifer GP (2008) GADD45A does not promote DNA demethylation. PLoS Genet 4(3):e1000013. doi: 10.1371/journal.pgen.1000013. PubMed PMID:18369439; PubMed Central PMCID: PMC2265528.
    • (2008) PLoS Genet , vol.4 , Issue.3
    • Jin, S.G.1    Guo, C.2    Pfeifer, G.P.3
  • 31
    • 38449102144 scopus 로고    scopus 로고
    • Functional analysis of promoter CpG methylation using a CpG-free luciferase reporter vector
    • Klug M, Rehli M (2006) Functional analysis of promoter CpG methylation using a CpG-free luciferase reporter vector. Epigenetics 1: 127-30.
    • (2006) Epigenetics , vol.1 , pp. 127-130
    • Klug, M.1    Rehli, M.2
  • 32
    • 27744577751 scopus 로고    scopus 로고
    • BiQ Analyzer: Visualization and quality control for DNA methylation data from bisulfite sequencing
    • DOI 10.1093/bioinformatics/bti652
    • Bock C, Reither S, Mikeska T, Paulsen M, Walter J (2005) BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing. Bioinformatics 21: 4067-8. (Pubitemid 41631851)
    • (2005) Bioinformatics , vol.21 , Issue.21 , pp. 4067-4068
    • Bock, C.1    Reither, S.2    Mikeska, T.3    Paulsen, M.4    Walter, J.5    Lengauer, T.6
  • 33
    • 0036856355 scopus 로고    scopus 로고
    • MethPrimer: Designing primers for methylation PCRs
    • Li LC, Dahiya R (2002) MethPrimer: designing primers for methylation PCRs. Bioinformatics 18: 1427-31.
    • (2002) Bioinformatics , vol.18 , pp. 1427-1431
    • Li, L.C.1    Dahiya, R.2
  • 34
    • 81155133314 scopus 로고    scopus 로고
    • Functional PU.1 in macrophages has a pivotal role in NF-κB activation and neutrophilic lung inflammation during endotoxemia
    • Karpurapu M, Wang X, Deng J, Park H, Xiao L, et al. (2011) Functional PU.1 in macrophages has a pivotal role in NF-κB activation and neutrophilic lung inflammation during endotoxemia. Blood 118: 5255-66.
    • (2011) Blood , vol.118 , pp. 5255-5266
    • Karpurapu, M.1    Wang, X.2    Deng, J.3    Park, H.4    Xiao, L.5
  • 36
    • 84879893899 scopus 로고    scopus 로고
    • Erythroid versus Myeloid Lineage Commitment: Regulating the Master Regulators
    • doi: 10.1002/stem cells1379
    • Wolff L, Humeniuk R (2013) Erythroid versus Myeloid Lineage Commitment: Regulating the Master Regulators. Stem Cells doi: 10.1002/stem cells1379.
    • (2013) Stem Cells
    • Wolff, L.1    Humeniuk, R.2
  • 37
    • 84862489540 scopus 로고    scopus 로고
    • Dynamic epigenetic enhancer signatures reveal key transcription factors associated with monocytic differentiation states
    • Pham TH, Benner C, Lichtinger M, Schwarzfischer L, Hu Y, et al. (2012) Dynamic epigenetic enhancer signatures reveal key transcription factors associated with monocytic differentiation states. Blood 119: e161-71.
    • (2012) Blood , vol.119
    • Pham, T.H.1    Benner, C.2    Lichtinger, M.3    Schwarzfischer, L.4    Hu, Y.5
  • 38
    • 84880547544 scopus 로고    scopus 로고
    • Mechanisms of in vivo binding site selection of the hematopoietic master transcription factor PU.1
    • Pham TH, Minderjahn J, Schmidl C, Hoffmeister H, Schmidhofer S, et al. (2013) Mechanisms of in vivo binding site selection of the hematopoietic master transcription factor PU.1. Nucleic Acids Res 41: 6391-402.
    • (2013) Nucleic Acids Res , vol.41 , pp. 6391-6402
    • Pham, T.H.1    Minderjahn, J.2    Schmidl, C.3    Hoffmeister, H.4    Schmidhofer, S.5
  • 39
    • 84883685078 scopus 로고    scopus 로고
    • PU.1 target genes undergo Tet2-coupled demethylation and DNMT3bmediated methylation in monocyte-to-osteoclast differentiation
    • [Epub ahead of print] PubMed PMID: 24028770
    • de la Rica L, Rodríguez-Ubreva J, García M, Islam AB, Urquiza JM, et al. (2013) PU.1 target genes undergo Tet2-coupled demethylation and DNMT3bmediated methylation in monocyte-to-osteoclast differentiation. Genome Biol 14: R99. [Epub ahead of print] PubMed PMID: 24028770.
    • (2013) Genome Biol , vol.14
    • De La Rica, L.1    Rodríguez-Ubreva, J.2    García, M.3    Islam, A.B.4    Urquiza, J.M.5
  • 40
    • 84883789401 scopus 로고    scopus 로고
    • Active DNA demethylation in postmitotic neurons: A reason for optimism
    • Gavin DP, Chase KA, Sharma RP (2013) Active DNA demethylation in postmitotic neurons: a reason for optimism. Neuropharmacology 75: 233-45.
    • (2013) Neuropharmacology , vol.75 , pp. 233-245
    • Gavin, D.P.1    Chase, K.A.2    Sharma, R.P.3
  • 41
    • 77951745847 scopus 로고    scopus 로고
    • Over expression of the growth arrest and DNA damage-induced 45alpha gene contributes to autoimmunity by promoting DNA demethylation in lupus T cells
    • Li Y, Zhao M, Yin H, Gao F, Wu X, et al. (2010) Over expression of the growth arrest and DNA damage-induced 45alpha gene contributes to autoimmunity by promoting DNA demethylation in lupus T cells. Arthritis Rheum 62: 1438-47.
    • (2010) Arthritis Rheum , vol.62 , pp. 1438-1447
    • Li, Y.1    Zhao, M.2    Yin, H.3    Gao, F.4    Wu, X.5
  • 42
    • 57649196594 scopus 로고    scopus 로고
    • DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45
    • Rai K, Huggins IJ, James SR, Karpf AR, Jones DA, et al. (2008) DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45. Cell 135: 1201-12.
    • (2008) Cell , vol.135 , pp. 1201-1212
    • Rai, K.1    Huggins, I.J.2    James, S.R.3    Karpf, A.R.4    Jones, D.A.5
  • 44
    • 59849090498 scopus 로고    scopus 로고
    • TAF12 recruits Gadd45a and the nucleotide excision repair complex to the promoter of rRNA genes leading to active DNA demethylation
    • Schmitz KM, Schmitt N, Hoffmann-Rohrer U, Schäfer A, Grummt I, et al. (2009) TAF12 recruits Gadd45a and the nucleotide excision repair complex to the promoter of rRNA genes leading to active DNA demethylation. Mol Cell 33: 344-53.
    • (2009) Mol Cell , vol.33 , pp. 344-353
    • Schmitz, K.M.1    Schmitt, N.2    Hoffmann-Rohrer, U.3    Schäfer, A.4    Grummt, I.5
  • 45
    • 49649125042 scopus 로고    scopus 로고
    • Genome-scale DNA methylation maps of pluripotent and differentiated cells
    • Meissner AT, Mikkelsen S, Gu H, Wernig M, Hanna J, et al. (2008) Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454: 766-70.
    • (2008) Nature , vol.454 , pp. 766-770
    • Meissner, A.T.1    Mikkelsen, S.2    Gu, H.3    Wernig, M.4    Hanna, J.5
  • 46
    • 66449083819 scopus 로고    scopus 로고
    • Conserved DNA methylation in Gadd45a(-/-) mice
    • Engel N, Tront JS, Erinle T (2009) Conserved DNA methylation in Gadd45a(-/-) mice. Epigenetics 4: 98-9.
    • (2009) Epigenetics , vol.4 , pp. 98-99
    • Engel, N.1    Tront, J.S.2    Erinle, T.3
  • 47
    • 77649104794 scopus 로고    scopus 로고
    • Reprogramming towards pluripotency requires AID-dependent DNA demethylation
    • Bhutani N, Brady JJ, Damian M, Sacco A, Corbel SY, et al. (2010) Reprogramming towards pluripotency requires AID-dependent DNA demethylation. Nature 463: 1042-7.
    • (2010) Nature , vol.463 , pp. 1042-1047
    • Bhutani, N.1    Brady, J.J.2    Damian, M.3    Sacco, A.4    Corbel, S.Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.