-
1
-
-
73449125521
-
Proteomic identification of multitasking proteins in unexpected locations complicates drug targeting
-
Butler GS, Overall CM (2009) Proteomic identification of multitasking proteins in unexpected locations complicates drug targeting. Nat Rev Drug Discov 8: 935-948.
-
(2009)
Nat Rev Drug Discov
, vol.8
, pp. 935-948
-
-
Butler, G.S.1
Overall, C.M.2
-
2
-
-
0033621398
-
Aberrant protein deposition and neurological disease
-
DOI 10.1074/jbc.274.53.37507
-
Kaytor MD, Warren ST (1999) Aberrant Protein Deposition and Neurological Disease. J Biol Chem 274: 37507-37510. (Pubitemid 30026802)
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.53
, pp. 37507-37510
-
-
Kaytor, M.D.1
Warren, S.T.2
-
3
-
-
84857219453
-
Protein localization in disease and therapy
-
Hung MC, Link W (2011) Protein localization in disease and therapy. J of Cell Sci 124: 3381-3392.
-
(2011)
J of Cell Sci
, vol.124
, pp. 3381-3392
-
-
Hung, M.C.1
Link, W.2
-
4
-
-
0028084968
-
Altered homologous and heterologous gap-junctional intercellular communication in primary human liver tumors associated with aberrant protein localization but not gene mutation of connexin 32
-
Krutovskikh V, Mazzoleni G, Mironov N, Omori Y, Aguelon AM, et al. (1994) Altered homologous and heterologous gap-junctional intercellular communication in primary human liver tumors associated with aberrant protein localization but not gene mutation of connexin 32. Int J Cancer 56: 87-94. (Pubitemid 24044798)
-
(1994)
International Journal of Cancer
, vol.56
, Issue.1
, pp. 87-94
-
-
Krutovskikh, V.1
Mazzoleni, G.2
Mironov, N.3
Omori, Y.4
Aguelon, A.-M.5
Mesnil, M.6
Berger, F.7
Partensky, C.8
Yamasaki, H.9
-
5
-
-
0028783773
-
Aberrant Subcellular Localization of BRCA1 in Breast Cancer
-
Chen Y, Chen CF, Riley DJ, Allred DC, Chen PL, et al. (1995) Aberrant Subcellular Localization of BRCA1 in Breast Cancer. Science 270: 789-791.
-
(1995)
Science
, vol.270
, pp. 789-791
-
-
Chen, Y.1
Chen, C.F.2
Riley, D.J.3
Allred, D.C.4
Chen, P.L.5
-
6
-
-
0035217475
-
Downregulation of placental syncytin expression and abnormal protein localization in pre-eclampsia
-
DOI 10.1053/plac.2001.0722
-
Lee X, Keith JCJ, Stumm N, Moutsatsos I, McCoy JM, et al. (2001) Downregulation of placental syncytin expression and abnormal protein localization in pre-eclampsia. Placenta 22: 808-812. (Pubitemid 33150398)
-
(2001)
Placenta
, vol.22
, Issue.10
, pp. 808-812
-
-
Lee, X.1
Keith Jr., J.C.2
Stumm, N.3
Moutsatsos, I.4
McCoy, J.M.5
Crum, C.P.6
Genest, D.7
Chin, D.8
Ehrenfels, C.9
Pijnenborg, R.10
Van Assche, F.A.11
Mi, S.12
-
7
-
-
0042166134
-
Molecular mechanisms of Bartter syndrome caused by mutations in the BSND gene
-
DOI 10.1007/s00418-003-0535-2
-
Hayama A, Rai T, Sasaki S, Uchida S (2003) Molecular mechanisms of Bartter syndrome caused by mutations in the BSND gene. Histochem & Cell Biol 119: 485-493. (Pubitemid 36918586)
-
(2003)
Histochemistry and Cell Biology
, vol.119
, Issue.6
, pp. 485-493
-
-
Hayama, A.1
Rai, T.2
Sasaki, S.3
Uchida, S.4
-
8
-
-
16344396089
-
Predicting protein localization in budding yeast
-
Chou KC, Cai YD (2005) Predicting protein localization in budding yeast. Bioinformatics 21: 944-950.
-
(2005)
Bioinformatics
, vol.21
, pp. 944-950
-
-
Chou, K.C.1
Cai, Y.D.2
-
9
-
-
27844598851
-
Searching for hypothetical proteins: Theory and practice based upon original data and literature
-
DOI 10.1016/j.pneurobio.2005.10.001, PII S0301008205001152
-
Lubec G, Afjehi-Sadat L, Yang JW, John JP (2005) Searching for hypothetical proteins: Theory and practice based upon original data and literature. Prog Neurobiol 77: 90-127. (Pubitemid 41654774)
-
(2005)
Progress in Neurobiology
, vol.77
, Issue.1-2
, pp. 90-127
-
-
Lubec, G.1
Afjehi-Sadat, L.2
Yang, J.-W.3
John, J.P.P.4
-
10
-
-
0028239038
-
Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies
-
DOI 10.1006/jmbi.1994.1267
-
Nakashima H, Nishikawa K (1994) Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies. J Mol Biol 238: 54-61. (Pubitemid 24156401)
-
(1994)
Journal of Molecular Biology
, vol.238
, Issue.1
, pp. 54-61
-
-
Nakashima, H.1
Nishikawa, K.2
-
11
-
-
0035874091
-
Prediction of protein cellular attributes using pseudo amino acid composition
-
Chou KC (2001) Prediction of protein cellular attributes using pseudo amino acid composition. Proteins: Structure, Function, and Genetics 43: 246-255.
-
(2001)
Proteins: Structure, Function, and Genetics
, vol.43
, pp. 246-255
-
-
Chou, K.C.1
-
12
-
-
1542400030
-
Predicting subcellular localization of proteins using machine-learned classifiers
-
DOI 10.1093/bioinformatics/btg447
-
Lu Z, Szafron D, Greiner R, Lu P, Wishart DS, et al. (2004) Predicting subcellular localization of proteins using machine-learned classifiers. Bioinformatics 20: 547-556. (Pubitemid 38344335)
-
(2004)
Bioinformatics
, vol.20
, Issue.4
, pp. 547-556
-
-
Lu, Z.1
Szafron, D.2
Greiner, R.3
Lu, P.4
Wishart, D.S.5
Poulin, B.6
Anvik, J.7
Macdonell, C.8
Eisner, R.9
-
14
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
Emanuelsson O, Nielsen H, Brunak S, von Heijne G (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300: 1005-1016.
-
(2000)
J Mol Biol
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
Von Heijne, G.4
-
15
-
-
0031240609
-
A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
-
Nielsen H, Engelbrecht J, Brunak S, von Heijne G (1997) A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Int J Neural Sys 8: 581-599.
-
(1997)
Int J Neural Sys
, vol.8
, pp. 581-599
-
-
Nielsen, H.1
Engelbrecht, J.2
Brunak, S.3
Von Heijne, G.4
-
17
-
-
84862165691
-
Multi-label multi-kernel transfer learning for human protein subcellular localization
-
Mei S (2012) Multi-label multi-kernel transfer learning for human protein subcellular localization. PLoS ONE 7: e37716.
-
(2012)
PLoS ONE
, vol.7
-
-
Mei, S.1
-
18
-
-
79951540724
-
Gene ontology based transfer learning for protein subcellular localization
-
Mei SY, Fei W, Zhou SG (2011) Gene ontology based transfer learning for protein subcellular localization. BMC Bioinformatics 12: 44.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 44
-
-
Mei, S.Y.1
Fei, W.2
Zhou, S.G.3
-
19
-
-
77951560201
-
Protein subcellular multi-localization prediction using a min-max modular support vector machine
-
Yang Y, Lu B (2010) Protein subcellular multi-localization prediction using a min-max modular support vector machine. International Journal of Neural Systems 20: 13-28.
-
(2010)
International Journal of Neural Systems
, vol.20
, pp. 13-28
-
-
Yang, Y.1
Lu, B.2
-
20
-
-
84886035395
-
PSI: A comprehensive and integrative approach for accurate plant subcellular localization prediction
-
Liu L, Zhang Z, Mei Q, Chen M (2013) PSI: A comprehensive and integrative approach for accurate plant subcellular localization prediction. PLoS ONE 8: e75826.
-
(2013)
PLoS ONE
, vol.8
-
-
Liu, L.1
Zhang, Z.2
Mei, Q.3
Chen, M.4
-
21
-
-
84890467045
-
Adaptive thresholding for multi-label SVM classification with application to protein subcellular localization prediction
-
Wan S, Mak MW, Kung SY (2013) Adaptive thresholding for multi-label SVM classification with application to protein subcellular localization prediction. In: 2013 IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP'13). pp. 3547-3551.
-
(2013)
2013 IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP'13)
, pp. 3547-3551
-
-
Wan, S.1
Mak, M.W.2
Kung, S.Y.3
-
22
-
-
1542400030
-
Predicting subcellular localization of proteins using machine-learned classifiers
-
DOI 10.1093/bioinformatics/btg447
-
Lu Z, Szafron D, Greiner R, Lu P, Wishart DS, et al. (2004) Predicting subcellular localization of proteins using machine-learned classifiers. Bioinformatics 20: 547-556. (Pubitemid 38344335)
-
(2004)
Bioinformatics
, vol.20
, Issue.4
, pp. 547-556
-
-
Lu, Z.1
Szafron, D.2
Greiner, R.3
Lu, P.4
Wishart, D.S.5
Poulin, B.6
Anvik, J.7
Macdonell, C.8
Eisner, R.9
-
23
-
-
40549096793
-
EpiLoc: A (working) text-based system for predicting protein subcellular location
-
Brady S, Shatkay H (2008) EpiLoc: a (working) text-based system for predicting protein subcellular location. In: Pac. Symp. Biocomput. pp. 604-615.
-
(2008)
Pac. Symp. Biocomput.
, pp. 604-615
-
-
Brady, S.1
Shatkay, H.2
-
24
-
-
54949120643
-
Improving subcellular localization prediction using text classification and the gene ontology
-
Fyshe A, Liu Y, Szafron D, Greiner R, Lu P (2008) Improving subcellular localization prediction using text classification and the gene ontology. Bioinformatics 24: 2512-2517.
-
(2008)
Bioinformatics
, vol.24
, pp. 2512-2517
-
-
Fyshe, A.1
Liu, Y.2
Szafron, D.3
Greiner, R.4
Lu, P.5
-
25
-
-
33747197197
-
Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-nearest neighbor classifiers
-
Chou KC, Shen HB (2006) Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-nearest neighbor classifiers. J of Proteome Research 5: 1888-1897.
-
(2006)
J of Proteome Research
, vol.5
, pp. 1888-1897
-
-
Chou, K.C.1
Shen, H.B.2
-
26
-
-
40249110012
-
ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization
-
Huang WL, Tung CW, Ho SW, Hwang SF, Ho SY (2008) ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization. BMC Bioinfor-matics 9: 80.
-
(2008)
BMC Bioinfor-matics
, vol.9
, pp. 80
-
-
Huang, W.L.1
Tung, C.W.2
Ho, S.W.3
Hwang, S.F.4
Ho, S.Y.5
-
27
-
-
84859263222
-
Wegoloc: Accurate prediction of protein subcellular localization using weighted gene ontology terms
-
Chi SM, Nam D (2012) Wegoloc: accurate prediction of protein subcellular localization using weighted gene ontology terms. Bioinformatics 28: 1028-1030.
-
(2012)
Bioinformatics
, vol.28
, pp. 1028-1030
-
-
Chi, S.M.1
Nam, D.2
-
28
-
-
84873955239
-
GOASVM: A subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition
-
Wan S, Mak MW, Kung SY (2013) GOASVM: A subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition. Journal of Theoretical Biology 323: 40-48.
-
(2013)
Journal of Theoretical Biology
, vol.323
, pp. 40-48
-
-
Wan, S.1
Mak, M.W.2
Kung, S.Y.3
-
31
-
-
84859699831
-
The Gene Ontology: Enhancements for 2011
-
The Gene Ontology Consortium
-
The Gene Ontology Consortium (2012) The Gene Ontology: enhancements for 2011. Nucleic Acids Res 40: D559-D564.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
-
32
-
-
75849158230
-
The Gene Ontology in 2010: Extensions and refinements
-
The Gene Ontology Consortium
-
The Gene Ontology Consortium (2010) The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res 38: D331-D335.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
-
33
-
-
1942451885
-
Mechanisms for multiple intracellular localization of human mitochondrial proteins
-
DOI 10.1016/j.mito.2004.02.002, PII S1567724904000212
-
Mueller JC, Andreoli C, Prokisch H, Meitinger T (2004) Mechanisms for multiple intracellular localization of human mitochondrial proteins. Mitochondrion 3: 315-325. (Pubitemid 38515398)
-
(2004)
Mitochondrion
, vol.3
, Issue.6
, pp. 315-325
-
-
Mueller, J.C.1
Andreoli, C.2
Prokisch, H.3
Meitinger, T.4
-
34
-
-
77956199192
-
Plant-mPLoc: A top-down strategy to augment the power for predicting plant protein subcellular localization
-
Chou KC, Shen HB (2010) Plant-mPLoc: A top-down strategy to augment the power for predicting plant protein subcellular localization. PLoS ONE 5: e11335.
-
(2010)
PLoS ONE
, vol.5
-
-
Chou, K.C.1
Shen, H.B.2
-
35
-
-
77957297596
-
Virus-mPLoc: A fusion classifier for viral protein subcellular location prediction by incorporating multiple sites
-
Shen HB, Chou KC (2010) Virus-mPLoc: A fusion classifier for viral protein subcellular location prediction by incorporating multiple sites. J Biomol Struct Dyn 26: 175-186.
-
(2010)
J Biomol Struct Dyn
, vol.26
, pp. 175-186
-
-
Shen, H.B.1
Chou, K.C.2
-
36
-
-
80755158862
-
iLoc-Plant: A multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites
-
Wu ZC, Xiao X, Chou KC (2011) iLoc-Plant: A multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites. Molecular BioSystems 7: 3287-3297.
-
(2011)
Molecular BioSystems
, vol.7
, pp. 3287-3297
-
-
Wu, Z.C.1
Xiao, X.2
Chou, K.C.3
-
37
-
-
79959667141
-
iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
-
Xiao X, Wu ZC, Chou KC (2011) iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites. Journal of Theoretical Biology 284: 42-51.
-
(2011)
Journal of Theoretical Biology
, vol.284
, pp. 42-51
-
-
Xiao, X.1
Wu, Z.C.2
Chou, K.C.3
-
38
-
-
84863388188
-
Prediction of protein subcellular multi-localization based on the general form of Chou's pseudo amino acid composition
-
Li LQ, Zhang Y, Zou LY, Zhou Y, Zheng XQ (2012) Prediction of protein subcellular multi-localization based on the general form of Chou's pseudo amino acid composition. Protein & Peptide Letters 19: 375-387.
-
(2012)
Protein & Peptide Letters
, vol.19
, pp. 375-387
-
-
Li, L.Q.1
Zhang, Y.2
Zou, L.Y.3
Zhou, Y.4
Zheng, X.Q.5
-
39
-
-
84868295522
-
mGOASVM: Multi-label protein subcellular localization based on gene ontology and support vector machines
-
Wan S, Mak MW, Kung SY (2012) mGOASVM: Multi-label protein subcellular localization based on gene ontology and support vector machines. BMC Bioinformatics 13: 290.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 290
-
-
Wan, S.1
Mak, M.W.2
Kung, S.Y.3
-
40
-
-
84862027781
-
Imbalanced multi-modal multi-label learning for subcellular localization prediction of human proteins with both single and multiple sites
-
He J, Gu H, Liu W (2011) Imbalanced multi-modal multi-label learning for subcellular localization prediction of human proteins with both single and multiple sites. PLoS ONE 7: e37155.
-
(2011)
PLoS ONE
, vol.7
-
-
He, J.1
Gu, H.2
Liu, W.3
-
41
-
-
84856376845
-
An ensemble classifier for eukaryotic protein subcellular location prediction using Gene Ontology categories and amino acid hydrophobicity
-
Li LQ, Zhang Y, Zou LY, Li CQ, Yu B, et al. (2012) An ensemble classifier for eukaryotic protein subcellular location prediction using Gene Ontology categories and amino acid hydrophobicity. PLoS ONE 7: e31057.
-
(2012)
PLoS ONE
, vol.7
-
-
Li, L.Q.1
Zhang, Y.2
Zou, L.Y.3
Li, C.Q.4
Yu, B.5
-
42
-
-
33847607437
-
Globally predicting protein functions based on co-expressed protein-protein interaction networks and ontology taxonomy similarities
-
DOI 10.1016/j.gene.2006.12.008, PII S0378111906007694
-
Zhu M, Gao L, Guo Z, Li Y, Wang D, et al. (2007) Globally predicting protein functions based on co-expressed protein-protein interaction networks and ontology taxonomy similarities. Gene 391: 113-119. (Pubitemid 46356791)
-
(2007)
Gene
, vol.391
, Issue.1-2
, pp. 113-119
-
-
Zhu, M.1
Gao, L.2
Guo, Z.3
Li, Y.4
Wang, D.5
Wang, J.6
Wang, C.7
-
43
-
-
47149083877
-
Metrics for GO based protein semantic similarity: A systematic evaluation
-
Pesquita C, Faria D, Falcao AO, Lord P, Counto FM (2008) Metrics for GO based protein semantic similarity: a systematic evaluation. BMC Bioinformatics 9: S4.
-
(2008)
BMC Bioinformatics
, vol.9
-
-
Pesquita, C.1
Faria, D.2
Falcao, A.O.3
Lord, P.4
Counto, F.M.5
-
44
-
-
33751393465
-
Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
-
Lei Z, Dai Y (2006) Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction. BMC Bioinformatics 7: 491.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 491
-
-
Lei, Z.1
Dai, Y.2
-
45
-
-
33646358998
-
Prediction of yeast protein-protein interaction network: Insights from the Gene Ontology and annotations
-
DOI 10.1093/nar/gkl219
-
Wu X, Zhu L, Guo J, Zhang DY, Lin K (2006) Prediction of yeast protein-protein interaction network: insights from the gene ontology and annotations. Nucleic Acids Res 34: 2137-2150. (Pubitemid 44321292)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.7
, pp. 2137-2150
-
-
Wu, X.1
Zhu, L.2
Guo, J.3
Zhang, D.-Y.4
Lin, K.5
-
46
-
-
33645821454
-
Assessing semantic similarity measures for the characterization of human regulatory pathways
-
Guo X, Liu R, Shriver CD, Hu H, Liebman MN (2006) Assessing semantic similarity measures for the characterization of human regulatory pathways. Bioinformatics 22: 967-973.
-
(2006)
Bioinformatics
, vol.22
, pp. 967-973
-
-
Guo, X.1
Liu, R.2
Shriver, C.D.3
Hu, H.4
Liebman, M.N.5
-
47
-
-
58149312546
-
Evaluation of GO-based functional similarity measures using S. Cerevisiae protein interaction and expression profile data
-
Xu T, Du L, Zhou Y (2008) Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data. BMC Bioinformatics 9: 472.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 472
-
-
Xu, T.1
Du, L.2
Zhou, Y.3
-
48
-
-
38349188469
-
Gaining confidence in biological interpretation of the microarray data: The functional consistence of the significant GO categories
-
Yang D, Li Y, Xiao H, Liu Q, Zhang M, et al. (2008) Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories. Bioinformatics 24: 265-271.
-
(2008)
Bioinformatics
, vol.24
, pp. 265-271
-
-
Yang, D.1
Li, Y.2
Xiao, H.3
Liu, Q.4
Zhang, M.5
-
49
-
-
0002016474
-
Semantic similarity in a taxonomy: An information-based measure and its application to problems of ambiguity in natural language
-
Resnik P (1999) Semantic similarity in a taxonomy: an information-based measure and its application to problems of ambiguity in natural language. Journal of Artificial Intelligence Research 11: 95-130.
-
(1999)
Journal of Artificial Intelligence Research
, vol.11
, pp. 95-130
-
-
Resnik, P.1
-
50
-
-
0037480738
-
Investigating semantic similarity measures across the gene ontology: The relationship between sequence and annotation
-
DOI 10.1093/bioinformatics/btg153
-
Lord PW, Stevens RD, Brass A, Goble CA (2003) Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 19: 1275-1283. (Pubitemid 36850221)
-
(2003)
Bioinformatics
, vol.19
, Issue.10
, pp. 1275-1283
-
-
Lord, P.W.1
Stevens, R.D.2
Brass, A.3
Goble, C.A.4
-
54
-
-
15944407681
-
Non-lexical approaches to identifying associative rela-tions in the gene ontology
-
Bodenreider O, Aubry M, Burgun A (2005) Non-lexical approaches to identifying associative rela-tions in the gene ontology. In: Pac. Symp. Biocomput. pp. 91-102.
-
(2005)
Pac. Symp. Biocomput.
, pp. 91-102
-
-
Bodenreider, O.1
Aubry, M.2
Burgun, A.3
-
56
-
-
19144367138
-
Prediction of functional modules based on comparative genome analysis and Gene Ontology application
-
DOI 10.1093/nar/gki573
-
Wu H, Su Z, Mao F, Olman V, Xu Y (2005) Prediction of functional modules based on comparative genome analysis and gene ontology application. Nucleic Acids Res 33: 2822-2837. (Pubitemid 41511222)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.9
, pp. 2822-2837
-
-
Wu, H.1
Su, Z.2
Mao, F.3
Olman, V.4
Xu, Y.5
-
57
-
-
3142749026
-
A knowledge-based clustering algorithm driven by Gene Ontology
-
DOI 10.1081/BIP-200025659
-
Cheng J, Cline M, Martin J, Finkelstein D, Awad T, et al. (2004) A knowledge-based clustering algorithm driven by gene ontology. Journal of Biopharmaceutical Statistics 14: 687-700. (Pubitemid 39296093)
-
(2004)
Journal of Biopharmaceutical Statistics
, vol.14
, Issue.3
, pp. 687-700
-
-
Cheng, J.1
Cline, M.2
Martin, J.3
Finkelstein, D.4
Awad, T.5
Kulp, D.6
Siani-Rose, M.A.7
-
58
-
-
20444381674
-
Broadly predicting specific gene functions with expression similarity and taxonomy similarity
-
DOI 10.1016/j.gene.2005.03.033, PII S0378111905001794
-
Yu H, Gao L, Tu K, Guo Z (2005) Broadly predicting specific gene function with expression similarity and taxonomy similarity. Gene 352: 75-81. (Pubitemid 40804973)
-
(2005)
Gene
, vol.352
, Issue.1-2
, pp. 75-81
-
-
Yu, H.1
Gao, L.2
Tu, K.3
Guo, Z.4
-
59
-
-
30344446931
-
Correlation between gene expression and GO semantic similarity
-
Sevilla JL, Segura V, Podhorski A, Guruceaga E, Mato JM, et al. (2005) Correlation between gene expression and GO semantic similarity. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2: 330-338.
-
(2005)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.2
, pp. 330-338
-
-
Sevilla, J.L.1
Segura, V.2
Podhorski, A.3
Guruceaga, E.4
Mato, J.M.5
-
60
-
-
34547840224
-
Information theory applied to the sparse gene ontology annotation network to predict novel gene function
-
DOI 10.1093/bioinformatics/btm195
-
Tao Y, Sam L, Li J, Friedman C, Lussier YA (2007) Information theory applied to the sparse gene ontology annotation network to predict novel gene function. Bioinformatics 23: i529-i538. (Pubitemid 47244440)
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Tao, Y.1
Sam, L.2
Li, J.3
Friedman, C.4
Lussier, Y.A.5
-
61
-
-
34447294237
-
A new method to measure the semantic similarity of GO terms
-
DOI 10.1093/bioinformatics/btm087
-
Wang JZ, Du Z, Payattakool R, Yu PS, Chen CF (2007) A new method to measure the semantic similarity of GO terms. Bioinformatics 23: 1274-1281. (Pubitemid 47050544)
-
(2007)
Bioinformatics
, vol.23
, Issue.10
, pp. 1274-1281
-
-
Wang, J.Z.1
Du, Z.2
Payattakool, R.3
Yu, P.S.4
Chen, C.-F.5
-
62
-
-
46849085587
-
XOA: Web-enabled cross-ontological analytics
-
Riensche RM, Baddeley BL, Sanfilippo AP, Posse C, Gopalan B (2007) XOA: Web-enabled cross-ontological analytics. In: 2007 IEEE Congress on Services. pp. 99-105.
-
(2007)
2007 IEEE Congress on Services
, pp. 99-105
-
-
Riensche, R.M.1
Baddeley, B.L.2
Sanfilippo, A.P.3
Posse, C.4
Gopalan, B.5
-
63
-
-
84894523932
-
Semantic similarity over gene ontology for multi-label protein subcellular localization
-
Wan S, Mak MW, Kung SY (2013) Semantic similarity over gene ontology for multi-label protein subcellular localization. Engineering 5: 68-72.
-
(2013)
Engineering
, vol.5
, pp. 68-72
-
-
Wan, S.1
Mak, M.W.2
Kung, S.Y.3
-
64
-
-
41349115432
-
The DAVID Gene Func-tional Classification Tool: A novel biological module-centric algorithm to functionally analyze large gene lists
-
Huang DW, Sherman BT, Tan Q, Collins JR, Alvord WG, et al. (2007) The DAVID Gene Func-tional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists. Genome Biology 8.
-
(2007)
Genome Biology
, pp. 8
-
-
Huang, D.W.1
Sherman, B.T.2
Tan, Q.3
Collins, J.R.4
Alvord, W.G.5
-
65
-
-
34547763236
-
A trasversal approach to predict gene product networks from ontology-based similarity
-
Chabalier J, Mosser J, Burgun A (2007) A trasversal approach to predict gene product networks from ontology-based similarity. BMC Bioinformatics 8: 235.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 235
-
-
Chabalier, J.1
Mosser, J.2
Burgun, A.3
-
66
-
-
49949096013
-
Gene ontology term overlap as a measure of gene functional similarity
-
Mistry M, Pavlidis P (2008) Gene ontology term overlap as a measure of gene functional similarity. BMC Bioinformatics 9: 327.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 327
-
-
Mistry, M.1
Pavlidis, P.2
-
67
-
-
60849139073
-
A relation based measure of semantic similarity for Gene Ontology annotations
-
Sheehan B, Quigley A, Gaudin B, Dobson S (2008) A relation based measure of semantic similarity for Gene Ontology annotations. BMC Bioinformatics 9: 468.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 468
-
-
Sheehan, B.1
Quigley, A.2
Gaudin, B.3
Dobson, S.4
-
68
-
-
68249087607
-
Semantic similarity in biomedical ontologies
-
Pesquita C, Faria D, Falcao AO, Lord P, Counto FM (2009) Semantic similarity in biomedical ontologies. PLoS Computational Biology 5: e1000443.
-
(2009)
PLoS Computational Biology
, vol.5
-
-
Pesquita, C.1
Faria, D.2
Falcao, A.O.3
Lord, P.4
Counto, F.M.5
-
69
-
-
84862298784
-
Semantic similarity analysis of protein data: Assessment with biological features and issues
-
Guzzi PH, Mina M, Guerra C, Cannataro M (2012) Semantic similarity analysis of protein data: assessment with biological features and issues. Brief Bioinform 13: 569-585.
-
(2012)
Brief Bioinform
, vol.13
, pp. 569-585
-
-
Guzzi, P.H.1
Mina, M.2
Guerra, C.3
Cannataro, M.4
-
70
-
-
84861309357
-
A multi-label predictor for identifying the subcellular locations of singleplex and multiplex eukaryotic proteins
-
Wang X, Li GZ (2012) A multi-label predictor for identifying the subcellular locations of singleplex and multiplex eukaryotic proteins. PLoS ONE 7: e36317.
-
(2012)
PLoS ONE
, vol.7
-
-
Wang, X.1
Li, G.Z.2
-
71
-
-
84877758233
-
Some remarks on predicting multi-label attributes in molecular biosystems
-
Chou KC (2013) Some remarks on predicting multi-label attributes in molecular biosystems. Molecular BioSystems 9: 1092-1100.
-
(2013)
Molecular BioSystems
, vol.9
, pp. 1092-1100
-
-
Chou, K.C.1
-
72
-
-
39449105071
-
Cell-PLoc: A package of web-servers for predicting subcellular localization of proteins in various organisms
-
Chou KC, Shen HB (2008) Cell-PLoc: A package of web-servers for predicting subcellular localization of proteins in various organisms. Nature Protocols 3: 153-162.
-
(2008)
Nature Protocols
, vol.3
, pp. 153-162
-
-
Chou, K.C.1
Shen, H.B.2
-
73
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
75
-
-
60349123328
-
Protein subcellular localization prediction using artificial intelligence tech-nology
-
Available
-
Nair R, Rost B (2008) Protein subcellular localization prediction using artificial intelligence tech-nology. In: Functional Proteomics, Springer. pp. 435-463. Available: http://link.springer.com/protocol/10.1007/978-1-59745-398-1- 27.
-
(2008)
Functional Proteomics
, pp. 435-463
-
-
Nair, R.1
Rost, B.2
-
76
-
-
84887270066
-
SCLpredT: Ab initio and homologybased prediction of subcellular localization by N-to-1 neural networks
-
Adelfio A, Volpato V, Pollastri G (2013) SCLpredT: Ab initio and homologybased prediction of subcellular localization by N-to-1 neural networks. SpringerPlus 2: 1-11.
-
(2013)
SpringerPlus
, vol.2
, pp. 1-11
-
-
Adelfio, A.1
Volpato, V.2
Pollastri, G.3
-
78
-
-
84876940405
-
On the consistency of multi-label learning
-
Gao W, Zhou ZH (2013) On the consistency of multi-label learning. Artificial Intelligence 199-200: 22-44.
-
(2013)
Artificial Intelligence
, vol.199-200
, pp. 22-44
-
-
Gao, W.1
Zhou, Z.H.2
-
84
-
-
77951942707
-
GOSemSim: An R package for measuring semantic similarity among GO terms and gene products
-
Yu G, Li F, Qin Y, Bo X, Wu Y, et al. (2010) GOSemSim: An R package for measuring semantic similarity among GO terms and gene products. Bioinformatics 26: 976-978.
-
(2010)
Bioinformatics
, vol.26
, pp. 976-978
-
-
Yu, G.1
Li, F.2
Qin, Y.3
Bo, X.4
Wu, Y.5
|