메뉴 건너뛰기




Volumn 14, Issue 3, 2004, Pages 687-700

A knowledge-based clustering algorithm driven by Gene Ontology

Author keywords

Cluster analysis; Gene expression; Gene Ontology (GO); Microarray

Indexed keywords

ALGORITHM; ARTICLE; CELL DIFFERENTIATION; CLUSTER ANALYSIS; DNA MICROARRAY; GENE EXPRESSION; PRIORITY JOURNAL;

EID: 3142749026     PISSN: 10543406     EISSN: None     Source Type: Journal    
DOI: 10.1081/BIP-200025659     Document Type: Article
Times cited : (90)

References (23)
  • 3
    • 0042128797 scopus 로고    scopus 로고
    • Incorporating biological knowledge into evaluation of causal regulatory hypotheses
    • Chrisman, L., Langley, P., Bay, S., Pohorille, A. (2003). Incorporating biological knowledge into evaluation of causal regulatory hypotheses. Pac. Symp. Biocomput. 128-139.
    • (2003) Pac. Symp. Biocomput. , pp. 128-139
    • Chrisman, L.1    Langley, P.2    Bay, S.3    Pohorille, A.4
  • 4
    • 0036940312 scopus 로고    scopus 로고
    • How well do we understand the clusters found in microarray data?
    • Clare, A., King, R. D. (2002). How well do we understand the clusters found in microarray data? In silico Biology 2:0046.
    • (2002) In Silico Biology , vol.2 , pp. 0046
    • Clare, A.1    King, R.D.2
  • 5
    • 0036578644 scopus 로고    scopus 로고
    • GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
    • Dahlquist, K. D., Salomonis, N., Vranizan, K., Lawlor, S. C., Conklin, B. R. (2002). GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat. Genet. 31:19-20.
    • (2002) Nat. Genet. , vol.31 , pp. 19-20
    • Dahlquist, K.D.1    Salomonis, N.2    Vranizan, K.3    Lawlor, S.C.4    Conklin, B.R.5
  • 6
    • 0037263812 scopus 로고    scopus 로고
    • MAPPFinder: Using gene ontology and GenMAPP to create a global gene-expression profile from microarray data
    • Doniger, S. W., Salomonis, N., Dahlquist, K. D., Vranizan, K., Lawlor, S. C., Conklin, B. R. (2003). MAPPFinder: Using gene ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol. 4:R7.
    • (2003) Genome Biol. , vol.4
    • Doniger, S.W.1    Salomonis, N.2    Dahlquist, K.D.3    Vranizan, K.4    Lawlor, S.C.5    Conklin, B.R.6
  • 9
    • 0033783651 scopus 로고    scopus 로고
    • The current excitement in bioinformatics-analysis of whole-genome expression data: How does it relate to protein structure and function?
    • Gerstein, M., Jansen, R. (2000). The current excitement in bioinformatics-analysis of whole-genome expression data: How does it relate to protein structure and function? Curr. Opin. Struct. Biol. 10:574-584.
    • (2000) Curr. Opin. Struct. Biol. , vol.10 , pp. 574-584
    • Gerstein, M.1    Jansen, R.2
  • 10
    • 0036798238 scopus 로고    scopus 로고
    • Judging the quality of gene expression-based clustering methods using gene annotation
    • Gibbons, F. D., Roth, F. P. (2002). Judging the quality of gene expression-based clustering methods using gene annotation. Genome Res. 12:1574-1581.
    • (2002) Genome Res. , vol.12 , pp. 1574-1581
    • Gibbons, F.D.1    Roth, F.P.2
  • 11
    • 0038014879 scopus 로고    scopus 로고
    • Co-clustering of biological networks and gene expression data
    • Hanisch, D., Zien, A., Zimmer, R., Lengauer, T. (2002). Co-clustering of biological networks and gene expression data. Bioinformatics 18 S1:S145-S154.
    • (2002) Bioinformatics , vol.18 S1
    • Hanisch, D.1    Zien, A.2    Zimmer, R.3    Lengauer, T.4
  • 13
    • 0035979259 scopus 로고    scopus 로고
    • Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experiments
    • Kerr, M. K., Churchill, G. A. (2001). Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experiments. Proc. Natl. Acad. Sci. USA 98:8961-8965.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 8961-8965
    • Kerr, M.K.1    Churchill, G.A.2
  • 14
    • 0036043244 scopus 로고    scopus 로고
    • Statistical methods for microarray assays
    • Krajewski, P., Bocianowski, J. (2002). Statistical methods for microarray assays. J. Appl. Genet. 43:269-278.
    • (2002) J. Appl. Genet. , vol.43 , pp. 269-278
    • Krajewski, P.1    Bocianowski, J.2
  • 15
    • 0036839597 scopus 로고    scopus 로고
    • Genomic and Proteomic analysis of the myeloid differentiation program: Global analysis of gene expression during induced differentiation in MPRO cell line
    • Lian, Z., Kluger, Y., Greenbaum, D. S., Tuck, D., Gerstein, M., Berliner, N., Weissman, S. M., Newburger, P. E. (2002). Genomic and Proteomic analysis of the myeloid differentiation program: Global analysis of gene expression during induced differentiation in MPRO cell line. Blood 100:3209-3220.
    • (2002) Blood , vol.100 , pp. 3209-3220
    • Lian, Z.1    Kluger, Y.2    Greenbaum, D.S.3    Tuck, D.4    Gerstein, M.5    Berliner, N.6    Weissman, S.M.7    Newburger, P.E.8
  • 16
    • 12244313858 scopus 로고    scopus 로고
    • Analysis of high density expression microarrays with signed-rank call algorithms
    • Liu, W. M., Mei, R., et al. (2002). Analysis of high density expression microarrays with signed-rank call algorithms. Bioinformatics 18:1593-1599.
    • (2002) Bioinformatics , vol.18 , pp. 1593-1599
    • Liu, W.M.1    Mei, R.2
  • 18
    • 0036738874 scopus 로고    scopus 로고
    • Applications of Tree-Maps to hierarchical biological data
    • McConnell, P., Johnson, K., Lin, S. (2002). Applications of Tree-Maps to hierarchical biological data. Bioinformatics 18:1278-1279.
    • (2002) Bioinformatics , vol.18 , pp. 1278-1279
    • McConnell, P.1    Johnson, K.2    Lin, S.3
  • 19
    • 0035375137 scopus 로고    scopus 로고
    • Computational analysis od microarray data
    • Quackenbush, J. (2001). Computational analysis od microarray data. Nat. Rev. Genet. 2:418-427.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 418-427
    • Quackenbush, J.1
  • 20
    • 0036901097 scopus 로고    scopus 로고
    • Microarray databases: Standards and ontologies
    • Stoeckert, C. J. Jr., Causton, H. C., Ball, C. A. (2002). Microarray databases: Standards and ontologies. Nat. Genet. 32 Suppl:469-473.
    • (2002) Nat. Genet. , vol.32 , Issue.SUPPL. , pp. 469-473
    • Stoeckert Jr., C.J.1    Causton, H.C.2    Ball, C.A.3
  • 21
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting gene expression with self-organizeing maps: Methods and application to hematopoietic differentiation
    • Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Dmittrovsky, E., Lander, E. S., Golub, T. R. (1999). Interpreting gene expression with self-organizeing maps: Methods and application to hematopoietic differentiation. Proc. Natl. Acad. Sci. USA 96:2907-2912.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2907-2912
    • Tamayo, P.1    Slonim, D.2    Mesirov, J.3    Zhu, Q.4    Dmittrovsky, E.5    Lander, E.S.6    Golub, T.R.7
  • 22
    • 0030854907 scopus 로고    scopus 로고
    • Review article. Transcription factors, normal myeloid development, and leukemia
    • Tenen, D. G., Hromas, R., Licht, J. D., Zhang, D. E. (1997). Review article. Transcription factors, normal myeloid development, and leukemia. Blood 90:489-519.
    • (1997) Blood , vol.90 , pp. 489-519
    • Tenen, D.G.1    Hromas, R.2    Licht, J.D.3    Zhang, D.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.