-
1
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
The Gene Ontology Consortium 10802651
-
Ashburner M Ball CA Blake JA Botstein D Butler H Cherry JM Davis AP Dolinski K Dwight SS Eppig JT et al Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium Nature genetics 2000, 25:25-29 10802651
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
3
-
-
33847663266
-
Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps
-
16824804
-
Brameier M Wiuf C Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps Journal of biomedical informatics 2007, 40:160-173 16824804
-
(2007)
Journal of Biomedical Informatics
, vol.40
, pp. 160-173
-
-
Brameier, M.1
Wiuf, C.2
-
4
-
-
1342330530
-
A graph-theoretic modeling on GO space for biological interpretation of gene clusters
-
14960465
-
Lee SG Hur JU Kim YS A graph-theoretic modeling on GO space for biological interpretation of gene clusters Bioinformatics (Oxford, England) 2004, 20:381-388 14960465
-
(2004)
Bioinformatics (Oxford, England)
, vol.20
, pp. 381-388
-
-
Lee, S.G.1
Hur, J.U.2
Kim, Y.S.3
-
5
-
-
3142749026
-
A knowledge-based clustering algorithm driven by Gene Ontology
-
15468759
-
Cheng J Cline M Martin J Finkelstein D Awad T Kulp D Siani-Rose MA A knowledge-based clustering algorithm driven by Gene Ontology Journal of biopharmaceutical statistics 2004, 14:687-700 15468759
-
(2004)
Journal of Biopharmaceutical Statistics
, vol.14
, pp. 687-700
-
-
Cheng, J.1
Cline, M.2
Martin, J.3
Finkelstein, D.4
Awad, T.5
Kulp, D.6
Siani-Rose, M.A.7
-
6
-
-
27544477696
-
An ontology-driven clustering method for supporting gene expression analysis
-
Computer-Based Medical Systems on; 23-24 June
-
Wang H Azuaje F Bodenreider O An ontology-driven clustering method for supporting gene expression analysis Computer-Based Medical Systems, 2005 Proceedings 18th IEEE Symposium on; 23-24 June 2005 389-394
-
(2005)
2005 Proceedings 18th IEEE Symposium
, pp. 389-394
-
-
Wang, H.1
Azuaje, F.2
Bodenreider, O.3
-
8
-
-
0037480738
-
Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation
-
12835272
-
Lord PW Stevens RD Brass A Goble CA Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation Bioinformatics (Oxford, England) 2003, 19:1275-1283 12835272
-
(2003)
Bioinformatics (Oxford, England)
, vol.19
, pp. 1275-1283
-
-
Lord, P.W.1
Stevens, R.D.2
Brass, A.3
Goble, C.A.4
-
9
-
-
19144367138
-
Prediction of functional modules based on comparative genome analysis and Gene Ontology application
-
1130488 15901854
-
Wu H Su Z Mao F Olman V Xu Y Prediction of functional modules based on comparative genome analysis and Gene Ontology application Nucleic acids research 2005, 33:2822-2837 1130488 15901854
-
(2005)
Nucleic Acids Research
, vol.33
, pp. 2822-2837
-
-
Wu, H.1
Su, Z.2
Mao, F.3
Olman, V.4
Xu, Y.5
-
11
-
-
30344446931
-
Correlation between gene expression and GO semantic similarity
-
Sevilla JL Segura V Podhorski A Guruceaga E Mato JM Martinez-Cruz LA Corrales FJ Rubio A Correlation between gene expression and GO semantic similarity IEEE/ACM Transactions on Computational Biology and Bioinformatics 2005, 2:330-338
-
(2005)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.2
, pp. 330-338
-
-
Sevilla, J.L.1
Segura, V.2
Podhorski, A.3
Guruceaga, E.4
Mato, J.M.5
Martinez-Cruz, L.A.6
Corrales, F.J.7
Rubio, A.8
-
12
-
-
33645821454
-
Assessing semantic similarity measures for the characterization of human regulatory pathways
-
16492685
-
Guo X Liu R Shriver CD Hu H Liebman MN Assessing semantic similarity measures for the characterization of human regulatory pathways Bioinformatics (Oxford, England) 2006, 22:967-973 16492685
-
(2006)
Bioinformatics (Oxford, England)
, vol.22
, pp. 967-973
-
-
Guo, X.1
Liu, R.2
Shriver, C.D.3
Hu, H.4
Liebman, M.N.5
-
16
-
-
34547840224
-
Information theory applied to the sparse gene ontology annotation network to predict novel gene function
-
17646340
-
Tao Y Sam L Li J Friedman C Lussier YA Information theory applied to the sparse gene ontology annotation network to predict novel gene function Bioinformatics (Oxford, England) 2007, 23:i529-538 17646340
-
(2007)
Bioinformatics (Oxford, England)
, vol.23
-
-
Tao, Y.1
Sam, L.2
Li, J.3
Friedman, C.4
Lussier, Y.A.5
-
17
-
-
33748335463
-
A new measure for functional similarity of gene products based on Gene Ontology
-
1559652 16776819
-
Schlicker A Domingues FS Rahnenfuhrer J Lengauer T A new measure for functional similarity of gene products based on Gene Ontology BMC bioinformatics 2006, 7:302 1559652 16776819
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 302
-
-
Schlicker, A.1
Domingues, F.S.2
Rahnenfuhrer, J.3
Lengauer, T.4
-
18
-
-
38549159946
-
FunSimMat: A comprehensive functional similarity database
-
2238903 17932054
-
Schlicker A Albrecht M FunSimMat: A comprehensive functional similarity database Nucleic acids research 2008, 36:D434-439 2238903 17932054
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Schlicker, A.1
Albrecht, M.2
-
19
-
-
34447294237
-
A new method to measure the semantic similarity of GO terms
-
17344234
-
Wang JZ Du Z Payattakool R Yu PS Chen CF A new method to measure the semantic similarity of GO terms Bioinformatics (Oxford, England) 2007, 23:1274-1281 17344234
-
(2007)
Bioinformatics (Oxford, England)
, vol.23
, pp. 1274-1281
-
-
Wang, J.Z.1
Du, Z.2
Payattakool, R.3
Yu, P.S.4
Chen, C.F.5
-
20
-
-
33751393465
-
Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
-
1660555 17090318
-
Lei Z Dai Y Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction BMC bioinformatics 2006, 7:491 1660555 17090318
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 491
-
-
Lei, Z.1
Dai, Y.2
-
21
-
-
0037255042
-
The Nuclear Protein Database (NPD): Sub-nuclear localisation and functional annotation of the nuclear proteome
-
165465 12520015
-
Dellaire G Farrall R Bickmore WA The Nuclear Protein Database (NPD): sub-nuclear localisation and functional annotation of the nuclear proteome Nucleic acids research 2003, 31:328-330 165465 12520015
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 328-330
-
-
Dellaire, G.1
Farrall, R.2
Bickmore, W.A.3
-
23
-
-
13444306676
-
CYGD: The Comprehensive Yeast Genome Database
-
540007 15608217
-
Guldener U Munsterkotter M Kastenmuller G Strack N van Helden J Lemer C Richelles J Wodak SJ Garcia-Martinez J Perez-Ortin JE et al. ECYGD: The Comprehensive Yeast Genome Database Nucleic acids research 2005, 33:D364-368 540007 15608217
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Guldener, U.1
Munsterkotter, M.2
Kastenmuller, G.3
Strack, N.4
van Helden, J.5
Lemer, C.6
Richelles, J.7
Wodak, S.J.8
Garcia-Martinez, J.9
Perez-Ortin, J.E.10
-
25
-
-
20844454090
-
Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces
-
15855251
-
Aytuna AS Gursoy A Keskin O Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces Bioinformatics (Oxford, England) 2005, 21:2850-2855 15855251
-
(2005)
Bioinformatics (Oxford, England)
, vol.21
, pp. 2850-2855
-
-
Aytuna, A.S.1
Gursoy, A.2
Keskin, O.3
-
26
-
-
44349159560
-
Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences
-
2396404 18390576
-
Guo Y Yu L Wen Z Li M Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences Nucleic acids research 2008, 36:3025-3030 2396404 18390576
-
(2008)
Nucleic Acids Research
, vol.36
, pp. 3025-3030
-
-
Guo, Y.1
Yu, L.2
Wen, Z.3
Li, M.4
-
27
-
-
23444452564
-
Probabilistic model of the human protein-protein interaction network
-
16082366
-
Rhodes DR Tomlins SA Varambally S Mahavisno V Barrette T Kalyana-Sundaram S Ghosh D Pandey A Chinnaiyan AM Probabilistic model of the human protein-protein interaction network Nature biotechnology 2005, 23:951-959 16082366
-
(2005)
Nature Biotechnology
, vol.23
, pp. 951-959
-
-
Rhodes, D.R.1
Tomlins, S.A.2
Varambally, S.3
Mahavisno, V.4
Barrette, T.5
Kalyana-Sundaram, S.6
Ghosh, D.7
Pandey, A.8
Chinnaiyan, A.M.9
-
28
-
-
44349093750
-
Uncovering signal transduction networks from high-throughput data by integer linear programming
-
2396433 18411207
-
Zhao XM Wang RS Chen L Aihara K Uncovering signal transduction networks from high-throughput data by integer linear programming Nucleic acids research 2008, 36:e48 2396433 18411207
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Zhao, X.M.1
Wang, R.S.2
Chen, L.3
Aihara, K.4
-
29
-
-
0032561246
-
The transcriptional program of sporulation in budding yeast
-
Chu S DeRisi J Eisen M Mulholland J Botstein D Brown PO Herskowitz I The transcriptional program of sporulation in budding yeast Science (New York, NY) 1998, 282:699-705
-
(1998)
Science (New York, NY)
, vol.282
, pp. 699-705
-
-
Chu, S.1
DeRisi, J.2
Eisen, M.3
Mulholland, J.4
Botstein, D.5
Brown, P.O.6
Herskowitz, I.7
-
30
-
-
0030826689
-
A novel yeast screen for mitotic arrest mutants identifies DOC1, a new gene involved in cyclin proteolysis
-
25633 9348530
-
Hwang LH Murray AW A novel yeast screen for mitotic arrest mutants identifies DOC1, a new gene involved in cyclin proteolysis Molecular biology of the cell 1997, 8:1877-1887 25633 9348530
-
(1997)
Molecular Biology of the Cell
, vol.8
, pp. 1877-1887
-
-
Hwang, L.H.1
Murray, A.W.2
-
31
-
-
0025282485
-
BET1, BOS1, and SEC22 are members of a group of interacting yeast genes required for transport from the endoplasmic reticulum to the Golgi complex
-
Newman AP Shim J Ferro-Novick S BET1, BOS1, and SEC22 are members of a group of interacting yeast genes required for transport from the endoplasmic reticulum to the Golgi complex Molecular and cellular biology 1990, 10:3405-3414
-
(1990)
Molecular and Cellular Biology
, vol.10
, pp. 3405-3414
-
-
Newman, A.P.1
Shim, J.2
Ferro-Novick, S.3
|