메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

Defining functional distances over Gene Ontology

Author keywords

[No Author keywords available]

Indexed keywords

DIRECT ACYCLIC GRAPHS; FUNCTIONAL RELATIONSHIP; FUNCTIONAL SIMILARITY; GENE CLUSTERS; GENE ONTOLOGY; METRIC SPACES; NON-UNIFORM; PROTEIN FUNCTIONS;

EID: 41449112812     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-9-50     Document Type: Article
Times cited : (54)

References (30)
  • 1
    • 33748776559 scopus 로고    scopus 로고
    • Automated protein function prediction-the genomic challenge
    • 16772267 16772267
    • Friedberg I Automated protein function prediction-the genomic challenge Brief Bioinform 2006, 7(3):225-242. 16772267 16772267
    • (2006) Brief Bioinform , vol.7 , Issue.3 , pp. 225-242
    • Friedberg, I.1
  • 2
    • 7944230660 scopus 로고    scopus 로고
    • Controlled vocabularies in bioinformatics: A case study in the gene ontology
    • Smith B Kumar A Controlled vocabularies in bioinformatics: A case study in the gene ontology DDT: BIOSILICO 2004, 2(6):246-252.
    • (2004) DDT: BIOSILICO , vol.2 , Issue.6 , pp. 246-252
    • Smith, B.1    Kumar, A.2
  • 3
    • 0034191302 scopus 로고    scopus 로고
    • Comparison of functional annotation schemes for genomes
    • 11793222
    • Rison S Hodgman T Thornton J Comparison of functional annotation schemes for genomes Funct Integr Genomics 2000, 1(1):56-69. 11793222
    • (2000) Funct Integr Genomics , vol.1 , Issue.1 , pp. 56-69
    • Rison, S.1    Hodgman, T.2    Thornton, J.3
  • 4
    • 20444456581 scopus 로고    scopus 로고
    • Automatic annotation of protein function
    • 15922590
    • Valencia A Automatic annotation of protein function Current Opinion in Structural Biology 2005, 15(3):267-74. 15922590
    • (2005) Current Opinion in Structural Biology , vol.15 , pp. 267-274
    • Valencia, A.1
  • 5
    • 0027133165 scopus 로고
    • Functions of the gene products of Escherichia coli
    • 372942 7508076
    • Riley M Functions of the gene products of Escherichia coli Microbiol Rev 1993, 57(4):862-952. 372942 7508076
    • (1993) Microbiol Rev , vol.57 , Issue.4 , pp. 862-952
    • Riley, M.1
  • 7
    • 13444269019 scopus 로고    scopus 로고
    • Obol: Integrating language and meaning in bio-ontologies: Conference Papers
    • Mungall C Obol: Integrating language and meaning in bio-ontologies: Conference Papers Comp Funct Genomics 2004, 5(6-7):509-520.
    • (2004) Comp Funct Genomics , vol.5 , Issue.6-7 , pp. 509-520
    • Mungall, C.1
  • 10
    • 0037480738 scopus 로고    scopus 로고
    • Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation
    • 12835272
    • Lord P Stevens R Brass A Goble C Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation Bioinformatics 2003, 19(10):1275-83. 12835272
    • (2003) Bioinformatics , vol.19 , Issue.10 , pp. 1275-1283
    • Lord, P.1    Stevens, R.2    Brass, A.3    Goble, C.4
  • 12
    • 33748335463 scopus 로고    scopus 로고
    • A new measure for functional similarity of gene products based on Gene Ontology
    • 1559652 16776819
    • Schlicker A Domingues F Rahnenfuhrer J Lengauer T A new measure for functional similarity of gene products based on Gene Ontology BMC Bioinformatics 2006, 7:302. 1559652 16776819
    • (2006) BMC Bioinformatics , vol.7 , pp. 302
    • Schlicker, A.1    Domingues, F.2    Rahnenfuhrer, J.3    Lengauer, T.4
  • 14
    • 34447294237 scopus 로고    scopus 로고
    • A new method to measure the semantic similarity of GO term
    • 17344234
    • Wang JZ Du Z Payattakool R Yu PS Chen CF A new method to measure the semantic similarity of GO term Bioinformatics 2007, 23(10):1274-1281. 17344234
    • (2007) Bioinformatics , vol.23 , Issue.10 , pp. 1274-1281
    • Wang, J.Z.1    Du, Z.2    Payattakool, R.3    Yu, P.S.4    Chen, C.F.5
  • 15
    • 0002016474 scopus 로고    scopus 로고
    • Semantic similarity in a taxonomy: An information-based measure and its application to problems of ambiguity in natural language
    • Resnik P Semantic similarity in a taxonomy: An information-based measure and its application to problems of ambiguity in natural language Journal of Artificial Intelligence Research 1999, 11:95-130.
    • (1999) Journal of Artificial Intelligence Research , vol.11 , pp. 95-130
    • Resnik, P.1
  • 18
    • 0033551248 scopus 로고    scopus 로고
    • Assigning Protein Functions by Comparative Genome Analysis: Protein Phylogenetic Profiles
    • 16324 10200254
    • Pellegrini M Marcotte E Thompson M Eisenberg D Yeates T Assigning Protein Functions by Comparative Genome Analysis: Protein Phylogenetic Profiles Proc Natl Acad Sci USA 1999, 96(8):4285-4288. 16324 10200254
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.8 , pp. 4285-4288
    • Pellegrini, M.1    Marcotte, E.2    Thompson, M.3    Eisenberg, D.4    Yeates, T.5
  • 19
    • 0027297096 scopus 로고
    • Covariation of Mutations in the V3 Loop of Human Immunodeficiency Virus Type 1 Envelope Protein: An Information Theoretic Analysis
    • 47099 8346232
    • Korber BT Farber R Wolpert D Lapedes A Covariation of Mutations in the V3 Loop of Human Immunodeficiency Virus Type 1 Envelope Protein: An Information Theoretic Analysis PNAS 1993, 90(15):7176-7180. 47099 8346232
    • (1993) PNAS , vol.90 , Issue.15 , pp. 7176-7180
    • Korber, B.T.1    Farber, R.2    Wolpert, D.3    Lapedes, A.4
  • 20
    • 34547404361 scopus 로고    scopus 로고
    • A Comparison of Spectral Clustering Algorithms
    • University of Washington Department of Computer Science
    • Verma D Meilǎ M A Comparison of Spectral Clustering Algorithms Tech Rep 03-05-01 University of Washington Department of Computer Science 2003.
    • (2003) Tech Rep 03-05-01
    • Verma, D.1    Meilǎ, M.2
  • 21
    • 84899013108 scopus 로고    scopus 로고
    • On Spectral Clustering: Analysis and an algorithm
    • Cambridge, MA: MIT Press Dietterich TG, Becker S, Ghahramani Z
    • Ng A Jordan M Weiss Y On Spectral Clustering: Analysis and an algorithm In Advances in Neural Information Processing Systems 14 Cambridge, MA: MIT Press Dietterich TG, Becker S, Ghahramani Z 2002:849-856.
    • (2002) In Advances in Neural Information Processing Systems , vol.14 , pp. 849-856
    • Ng, A.1    Jordan, M.2    Weiss, Y.3
  • 24
    • 84886755022 scopus 로고    scopus 로고
    • Guide to GO Evidence Codes http://www.geneontology.org/GO.evidence.shtml
  • 25
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • 16731699
    • Li W Godzik A Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences Bioinformatics 2006, 22(13):1658-1659. 16731699
    • (2006) Bioinformatics , vol.22 , Issue.13 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 28
    • 0012287167 scopus 로고    scopus 로고
    • Learning Segmentation by Random Walks
    • Meilǎ M Shi J Learning Segmentation by Random Walks NIPS2000 2000.
    • (2000) NIPS2000
    • Meilǎ, M.1    Shi, J.2
  • 29
    • 33845576492 scopus 로고    scopus 로고
    • The Multicut Lemma
    • University of Washington Statistics
    • Meilǎ M The Multicut Lemma Tech Rep 451 University of Washington Statistics 2004.
    • (2004) Tech Rep 451
    • Meilǎ, M.1
  • 30
    • 33845873289 scopus 로고    scopus 로고
    • Interactive Tree Of Life (iTOL): An online tool for phylogenetic tree display and annotation
    • 17050570
    • Letunic M Bork P Interactive Tree Of Life (iTOL): An online tool for phylogenetic tree display and annotation Bioinformatics 2007, 23:127-128. 17050570
    • (2007) Bioinformatics , vol.23 , pp. 127-128
    • Letunic, M.1    Bork, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.