-
2
-
-
0001368649
-
Patterns of variation in levels of homoplasy
-
Sanderson MJ, Donoghue MJ (1989) Patterns of variation in levels of homoplasy. Evolution 43: 1781-1795.
-
(1989)
Evolution
, vol.43
, pp. 1781-1795
-
-
Sanderson, M.J.1
Donoghue, M.J.2
-
3
-
-
49749137335
-
Frequent and widespread parallel evolution of protein sequences
-
Rokas A, Carroll SB (2008) Frequent and widespread parallel evolution of protein sequences. Molecular Biology and Evolution 25: 1943-1953.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 1943-1953
-
-
Rokas, A.1
Carroll, S.B.2
-
4
-
-
0001336205
-
-
In Hillis DM, Moritz C, Mable BK, editors. Molecular Systematics. 2nd ed Sunderland MA: Sinauer
-
Swofford DL, Olsen GJ, Waddell PJ, Hillis DM (1996) Phylogenetic inference. In: Hillis DM, Moritz C, Mable BK, editors. Molecular Systematics. 2nd ed. Sunderland, MA: Sinauer. pp. 407-514.
-
(1996)
Phylogenetic Inference
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
5
-
-
0035339920
-
Molecular phylogenetics: State-of-the-art methods for looking into the past
-
DOI 10.1016/S0168-9525(01)02272-7, PII S0168952501022727
-
Whelan S, Lio P, Goldman N (2001) Molecular phylogenetics: state-of-The-art methods for looking into the past. Trends Genet 17: 262-272. (Pubitemid 32378749)
-
(2001)
Trends in Genetics
, vol.17
, Issue.5
, pp. 262-272
-
-
Whelan, S.1
Lio, P.2
Goldman, N.3
-
6
-
-
0033793019
-
Rare genomic changes as a tool for phylogenetics
-
Rokas A, Holland PWH (2000) Rare genomic changes as a tool for phylogenetics. Trends in Ecology and Evolution 15: 454-459.
-
(2000)
Trends in Ecology and Evolution
, vol.15
, pp. 454-459
-
-
Rokas, A.1
Pwh, H.2
-
7
-
-
0033230110
-
Intron insertion as a phylogenetic character: The engrailed homeobox of Strepsiptera does not indicate affinity with Diptera
-
Rokas A, Kathirithamby J, Holland PWH (1999) Intron insertion as a phylogenetic character: the engrailed homeobox of Strepsiptera does not indicate affinity with Diptera. Insect Molecular Biology 8: 527-530.
-
(1999)
Insect Molecular Biology
, vol.8
, pp. 527-530
-
-
Rokas, A.1
Kathirithamby, J.2
Pwh, H.3
-
9
-
-
0033964296
-
SINE insertions: Powerful tools for molecular systematics
-
DOI 10.1002/(SICI)1521-1878(200002)22:2<148::AID-BIES6>3.0.CO;2-Z
-
Shedlock AM, Okada N (2000) SINE insertions: powerful tools for molecular systematics. Bioessays 22: 148-160. (Pubitemid 30092081)
-
(2000)
BioEssays
, vol.22
, Issue.2
, pp. 148-160
-
-
Shedlock, A.M.1
Okada, N.2
-
10
-
-
19544374490
-
Genome rearrangement distances and gene order phylogeny in γ-proteobacteria
-
DOI 10.1093/molbev/msi134
-
Belda E, Moya A, Silva FJ (2005) Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria. Mol Biol Evol 22: 1456-1467. (Pubitemid 40734196)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.6
, pp. 1456-1467
-
-
Belda, E.1
Maya, A.2
Silva, F.J.3
-
11
-
-
33645023614
-
Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
-
Scannell DR, Byrne KP, Gordon JL, Wong S, Wolfe KH (2006) Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440: 341-345.
-
(2006)
Nature
, vol.440
, pp. 341-345
-
-
Scannell, D.R.1
Byrne, K.P.2
Gordon, J.L.3
Wong, S.4
Wolfe, K.H.5
-
12
-
-
34047227628
-
Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements
-
DOI 10.1093/molbev/msm029
-
Rogozin IB, Wolf YI, Carmel L, Koonin EV (2007) Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements. Mol Biol Evol 24: 1080-1090. (Pubitemid 46536720)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.4
, pp. 1080-1090
-
-
Rogozin, I.B.1
Wolf, Y.I.2
Carmel, L.3
Koonin, E.V.4
-
13
-
-
42249084107
-
Homoplasy in genome-wide analysis of rare amino acid replacements: The molecularevolutionary basis for Vavilov's law of homologous series
-
Rogozin IB, Thomson K, Csuros M, Carmel L, Koonin EV (2008) Homoplasy in genome-wide analysis of rare amino acid replacements: the molecularevolutionary basis for Vavilov's law of homologous series. Biology Direct 3: 7.
-
(2008)
Biology Direct
, vol.3
, pp. 7
-
-
Rogozin, I.B.1
Thomson, K.2
Csuros, M.3
Carmel, L.4
Koonin, E.V.5
-
14
-
-
34547755564
-
Rare coding sequence changes are consistent with Ecdysozoa, not Coelomata
-
DOI 10.1093/molbev/msm105
-
Irimia M, Maeso I, Penny D, Garcia-Fernandez J, Roy SW (2007) Rare coding sequence changes are consistent with ecdysozoa, not Coelomata. Molecular Biology and Evolution 24: 1604-1607. (Pubitemid 47236704)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1604-1607
-
-
Irimia, M.1
Maeso, I.2
Penny, D.3
Garcia-Fernandez, J.4
Roy, S.W.5
-
15
-
-
37549040975
-
Analysis of rare amino acid replacements supports the Coelomata clade
-
Rogozin IB, Wolf YI, Carmel L, Koonin EV (2007) Analysis of rare amino acid replacements supports the Coelomata clade. Mol Biol Evol 24: 2594-2597.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2594-2597
-
-
Rogozin, I.B.1
Wolf, Y.I.2
Carmel, L.3
Koonin, E.V.4
-
16
-
-
0031010579
-
Evidence for a clade of nematodes, arthropods and other moulting animals
-
DOI 10.1038/387489a0
-
Aguinaldo AMA, Turbeville JM, Linford LS, Rivera MC, Garey JR, et al. (1997) Evidence for a clade of nematodes, arthropods and other moulting animals. Nature 387: 489-493. (Pubitemid 27235464)
-
(1997)
Nature
, vol.387
, Issue.6632
, pp. 489-493
-
-
Aguinaldo, A.M.A.1
Turbeville, J.M.2
Linford, L.S.3
Rivera, M.C.4
Garey, J.R.5
Raff, R.A.6
Lake, J.A.7
-
17
-
-
84883006832
-
-
Scannell DR, Zill OA, Rokas A, Payen C, Dunham MJ, et al. (2011) The awesome power of yeast evolutionary genetics: new genome sequences and strain resources for the Saccharomyces sensu stricto genus. G3 1: 11-25.
-
(2011)
The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces Sensu Stricto Genus. G3
, vol.1
, pp. 11-25
-
-
Scannell, D.R.1
Zill, O.A.2
Rokas, A.3
Payen, C.4
Dunham, M.J.5
-
19
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
20
-
-
84878113118
-
Inferring ancient divergences requires genes with strong phylogenetic signals
-
Salichos L, Rokas A (2013) Inferring ancient divergences requires genes with strong phylogenetic signals. Nature 497: 327-331.
-
(2013)
Nature
, vol.497
, pp. 327-331
-
-
Salichos, L.1
Rokas, A.2
-
21
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
DOI 10.1093/bioinformatics/btl446
-
Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. (Pubitemid 44642609)
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2688-2690
-
-
Stamatakis, A.1
-
22
-
-
84898641369
-
Novel information theory-based measures for quantifying incongruence among phylogenetic trees
-
in press
-
Salichos L, Stamatakis A, Rokas A (2014) Novel information theory-based measures for quantifying incongruence among phylogenetic trees. Molecular Biology and Evolution: in press.
-
(2014)
Molecular Biology and Evolution
-
-
Salichos, L.1
Stamatakis, A.2
Rokas, A.3
-
24
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
DOI 10.1038/nature02053
-
Rokas A, Williams BL, King N, Carroll SB (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425: 798-804. (Pubitemid 37355944)
-
(2003)
Nature
, vol.425
, Issue.6960
, pp. 798-804
-
-
Rokas, A.1
Williams, B.I.2
King, N.3
Carroll, S.B.4
-
25
-
-
84876783002
-
Saccharomyces diversity and evolution: A budding model genus
-
Hittinger CT (2013) Saccharomyces diversity and evolution: a budding model genus. Trends in Genetics 29: 309-317.
-
(2013)
Trends in Genetics
, vol.29
, pp. 309-317
-
-
Hittinger, C.T.1
|