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Volumn 1844, Issue 5, 2014, Pages 977-987

Autoimmune profiling with protein microarrays in clinical applications

Author keywords

Autoantibody; Autoimmune disease; Protein microarray

Indexed keywords

AUTOIMMUNE DISEASE; DATA ANALYSIS; DEGENERATIVE DISEASE; DIAGNOSTIC PROCEDURE; DISEASE COURSE; ENZYME LINKED IMMUNOSORBENT ASSAY; HUMAN; IMMUNODETECTION; INFORMATION PROCESSING; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN FUNCTION; PROTEIN MICROARRAY; REVIEW; WESTERN BLOTTING;

EID: 84898454572     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2014.02.023     Document Type: Review
Times cited : (19)

References (110)
  • 1
    • 84865341197 scopus 로고    scopus 로고
    • Autoimmune channelopathies: New antibody-mediated disorders of the central nervous system
    • A. Vincent Autoimmune channelopathies: new antibody-mediated disorders of the central nervous system F1000 Biol. Rep. 1 2009 61
    • (2009) F1000 Biol. Rep. , vol.1 , pp. 61
    • Vincent, A.1
  • 2
    • 84859381083 scopus 로고
    • Serum autoantibody signature of ductal carcinoma in situ progression to invasive breast cancer
    • A. Mange, J. Lacombe, C. Bascoul-Mollevi, and M. Jarlier et al. Serum autoantibody signature of ductal carcinoma in situ progression to invasive breast cancer Clin. Cancer Res. 2012 1992-2000 18
    • (1992) Clin. Cancer Res. , vol.2012 , pp. 18
    • Mange, A.1    Lacombe, J.2    Bascoul-Mollevi, C.3    Jarlier, M.4
  • 3
    • 42749097973 scopus 로고    scopus 로고
    • Immunity to self and self-maintenance: A unified theory of brain pathologies
    • M. Schwartz, and Y. Ziv Immunity to self and self-maintenance: a unified theory of brain pathologies Trends Immunol. 29 2008 211 219
    • (2008) Trends Immunol. , vol.29 , pp. 211-219
    • Schwartz, M.1    Ziv, Y.2
  • 4
    • 84862740239 scopus 로고    scopus 로고
    • Neural antigen-specific autoimmune disorders
    • R. Iorio, and V.A. Lennon Neural antigen-specific autoimmune disorders Immunol. Rev. 248 2012 104 121
    • (2012) Immunol. Rev. , vol.248 , pp. 104-121
    • Iorio, R.1    Lennon, V.A.2
  • 5
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene-expression patterns with a complementary-DNA microarray
    • M. Schena, D. Shalon, R.W. Davis, and P.O. Brown Quantitative monitoring of gene-expression patterns with a complementary-DNA microarray Science 270 1995 467 470
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 6
    • 84868689977 scopus 로고    scopus 로고
    • DNA microarrays for the diagnosis of infectious diseases
    • E. Donatin, and M. Drancourt DNA microarrays for the diagnosis of infectious diseases Med. Mal. Infect. 42 2012 453 459
    • (2012) Med. Mal. Infect. , vol.42 , pp. 453-459
    • Donatin, E.1    Drancourt, M.2
  • 8
    • 84862128944 scopus 로고    scopus 로고
    • Simultaneous analysis of cerebrospinal fluid biomarkers using microsphere-based xMAP multiplex technology for early detection of Alzheimer's disease
    • J.-H. Kang, H. Vanderstichele, J.Q. Trojanowski, and L.M. Shaw Simultaneous analysis of cerebrospinal fluid biomarkers using microsphere-based xMAP multiplex technology for early detection of Alzheimer's disease Methods 56 2012 484 493
    • (2012) Methods , vol.56 , pp. 484-493
    • Kang, J.-H.1    Vanderstichele, H.2    Trojanowski, J.Q.3    Shaw, L.M.4
  • 9
    • 84875679362 scopus 로고    scopus 로고
    • Mitochondria targeted therapeutic approaches in Parkinson's and Huntington's diseases
    • R.K. Chaturvedi, and M.F. Beal Mitochondria targeted therapeutic approaches in Parkinson's and Huntington's diseases Mol. Cell. Neurosci. 55 2013 101 114
    • (2013) Mol. Cell. Neurosci. , vol.55 , pp. 101-114
    • Chaturvedi, R.K.1    Beal, M.F.2
  • 12
    • 27644552994 scopus 로고    scopus 로고
    • Advances in functional protein microarray technology
    • DOI 10.1111/j.1742-4658.2005.04970.x
    • P. Bertone, and M. Snyder Advances in functional protein microarray technology FEBS J. 272 2005 5400 5411 (Pubitemid 41579404)
    • (2005) FEBS Journal , vol.272 , Issue.21 , pp. 5400-5411
    • Bertone, P.1    Snyder, M.2
  • 13
    • 84878697447 scopus 로고
    • Glycoproteomic analysis of tissues from patients with colon cancer using lectin microarrays and nanoLC-MS/MS
    • Y. Li, T. Wen, M. Zhu, and L. Li et al. Glycoproteomic analysis of tissues from patients with colon cancer using lectin microarrays and nanoLC-MS/MS Mol. Biosyst. 2013 1877-1887 9
    • (1877) Mol. Biosyst. , vol.2013 , pp. 9
    • Li, Y.1    Wen, T.2    Zhu, M.3    Li, L.4
  • 14
    • 80052313934 scopus 로고    scopus 로고
    • Epitope mapping of Atlantic salmon major allergen by peptide microarray immunoassay
    • M. Perez-Gordo, J. Lin, L. Bardina, and C. Pastor-Vargas et al. Epitope mapping of Atlantic salmon major allergen by peptide microarray immunoassay Int. Arch. Allergy Immunol. 157 2012 31 40
    • (2012) Int. Arch. Allergy Immunol. , vol.157 , pp. 31-40
    • Perez-Gordo, M.1    Lin, J.2    Bardina, L.3    Pastor-Vargas, C.4
  • 16
    • 0033403758 scopus 로고    scopus 로고
    • The use of aptamers in large arrays for molecular diagnostics
    • DOI 10.1016/S1084-8592(99)80014-9
    • E.N. Brody, M.C. Willis, J.D. Smith, and S. Jayasena et al. The use of aptamers in large arrays for molecular diagnostics Mol. Diagn. 4 1999 381 388 (Pubitemid 30036377)
    • (1999) Molecular Diagnosis , vol.4 , Issue.4 , pp. 381-388
    • Brody, E.N.1
  • 17
    • 84871656745 scopus 로고    scopus 로고
    • Aptamer microarray as a novel bioassay for protein-protein interaction discovery and analysis
    • L.-C. Chen, S.-C. Tzeng, and K. Peck Aptamer microarray as a novel bioassay for protein-protein interaction discovery and analysis Biosens. Bioelectron. 42 2013 248 255
    • (2013) Biosens. Bioelectron. , vol.42 , pp. 248-255
    • Chen, L.-C.1    Tzeng, S.-C.2    Peck, K.3
  • 18
    • 78650149915 scopus 로고    scopus 로고
    • Aptamer-based multiplexed proteomic technology for biomarker discovery
    • L. Gold, D. Ayers, J. Bertino, and C. Bock et al. Aptamer-based multiplexed proteomic technology for biomarker discovery PLoS ONE 5 2010
    • (2010) PLoS ONE , vol.5
    • Gold, L.1    Ayers, D.2    Bertino, J.3    Bock, C.4
  • 19
    • 84871702330 scopus 로고    scopus 로고
    • Feasibility of an early Alzheimer's disease immunosignature diagnostic test
    • L. Restrepo, P. Stafford, and S.A. Johnston Feasibility of an early Alzheimer's disease immunosignature diagnostic test J. Neuroimmunol. 254 2013 154 160
    • (2013) J. Neuroimmunol. , vol.254 , pp. 154-160
    • Restrepo, L.1    Stafford, P.2    Johnston, S.A.3
  • 20
    • 84858128656 scopus 로고    scopus 로고
    • Antigen microarrays identify CNS-produced autoantibodies in RRMS
    • F.J. Quintana, M.F. Farez, G. Izquierdo, and M. Lucas et al. Antigen microarrays identify CNS-produced autoantibodies in RRMS Neurology 78 2012
    • (2012) Neurology , vol.78
    • Quintana, F.J.1    Farez, M.F.2    Izquierdo, G.3    Lucas, M.4
  • 21
    • 0242608332 scopus 로고    scopus 로고
    • Protein microarrays: Promising tools for proteomic research
    • DOI 10.1002/pmic.200300600
    • M.F. Templin, D. Stoll, J.M. Schwenk, and O. Potz et al. Protein microarrays: promising tools for proteomic research Proteomics 3 2003 2155 2166 (Pubitemid 37414082)
    • (2003) Proteomics , vol.3 , Issue.11 , pp. 2155-2166
    • Templin, M.F.1    Stoll, D.2    Schwenk, J.M.3    Potz, O.4    Kramer, S.5    Joos, T.O.6
  • 22
    • 0033768106 scopus 로고    scopus 로고
    • Analysis of yeast protein kinases using protein chips
    • H. Zhu, J.F. Klemic, S. Chang, and P. Bertone et al. Analysis of yeast protein kinases using protein chips Nat. Genet. 26 2000
    • (2000) Nat. Genet. , vol.26
    • Zhu, H.1    Klemic, J.F.2    Chang, S.3    Bertone, P.4
  • 23
    • 84897499540 scopus 로고    scopus 로고
    • Association between tumor-associated macrophage infiltration, high grade prostate cancer, and biochemical recurrence after radical prostatectomy
    • K. Gollapudi, C. Galet, T. Grogan, and H. Zhang et al. Association between tumor-associated macrophage infiltration, high grade prostate cancer, and biochemical recurrence after radical prostatectomy Am. J. Cancer Res. 3 2013 523 529
    • (2013) Am. J. Cancer Res. , vol.3 , pp. 523-529
    • Gollapudi, K.1    Galet, C.2    Grogan, T.3    Zhang, H.4
  • 24
    • 79954579610 scopus 로고    scopus 로고
    • A high-throughput proteomic approach provides distinct signatures for thyroid cancer behavior
    • S. Cheng, S. Serra, M. Mercado, S. Ezzat, and S.L. Asa A high-throughput proteomic approach provides distinct signatures for thyroid cancer behavior Clin. Cancer Res. 17 2011 2385 2394
    • (2011) Clin. Cancer Res. , vol.17 , pp. 2385-2394
    • Cheng, S.1    Serra, S.2    Mercado, M.3    Ezzat, S.4    Asa, S.L.5
  • 25
    • 84862787623 scopus 로고    scopus 로고
    • A multiplexed screening method for agonists and antagonists of the estrogen receptor protein
    • Z. Li, M. Yan, Z. Li, and M. Vuki et al. A multiplexed screening method for agonists and antagonists of the estrogen receptor protein Anal. Bioanal. Chem. 403 2012 1373 1384
    • (2012) Anal. Bioanal. Chem. , vol.403 , pp. 1373-1384
    • Li, Z.1    Yan, M.2    Li, Z.3    Vuki, M.4
  • 27
    • 0026710324 scopus 로고
    • Amplification systems in immunoenzymatic techniques
    • S. Avrameas Amplification systems in immunoenzymatic techniques J. Immunol. Methods 150 1992 23 32
    • (1992) J. Immunol. Methods , vol.150 , pp. 23-32
    • Avrameas, S.1
  • 28
    • 0000767293 scopus 로고    scopus 로고
    • Soft lithographic methods for nano-fabrication
    • X.M. Zhao, Y.N. Xia, and G.M. Whitesides Soft lithographic methods for nano-fabrication J. Mater. Chem. 7 1997 1069 1074
    • (1997) J. Mater. Chem. , vol.7 , pp. 1069-1074
    • Zhao, X.M.1    Xia, Y.N.2    Whitesides, G.M.3
  • 30
    • 0035430843 scopus 로고    scopus 로고
    • Single step generation of protein arrays from DNA by cell-free expression and in situ immobilisation (PISA method)
    • (art. no.-e73)
    • M.Y. He, and M.J. Taussig Single step generation of protein arrays from DNA by cell-free expression and in situ immobilisation (PISA method) Nucleic Acids Res. 29 2001 (art. no.-e73)
    • (2001) Nucleic Acids Res. , vol.29
    • He, M.Y.1    Taussig, M.J.2
  • 31
    • 77149134294 scopus 로고    scopus 로고
    • Cell-free synthesis-based protein microarrays and their applications
    • H. Chandra, and S. Srivastava Cell-free synthesis-based protein microarrays and their applications Proteomics 10 2010 717 730
    • (2010) Proteomics , vol.10 , pp. 717-730
    • Chandra, H.1    Srivastava, S.2
  • 32
    • 20444420500 scopus 로고    scopus 로고
    • IgG antibodies against bovine serum albumin in humans - Their prevalence and response to exposure to bovine serum albumin
    • DOI 10.1016/j.jim.2005.01.022, PII S0022175905000761
    • T. Mogues, J. Li, J. Coburn, and D.J. Kuter IgG antibodies against bovine serum albumin in humans - their prevalence and response to exposure to bovine serum albumin J. Immunol. Methods 300 2005 1 11 (Pubitemid 40805583)
    • (2005) Journal of Immunological Methods , vol.300 , Issue.1-2 , pp. 1-11
    • Mogues, T.1    Li, J.2    Coburn, J.3    Kuter, D.J.4
  • 33
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during assembly of head of bacteriophage-T4
    • U.K. Laemmli Cleavage of structural proteins during assembly of head of bacteriophage-T4 Nature 227 1970 680 685
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 35
    • 0019551730 scopus 로고
    • Western blotting - Electrophoretic transfer of proteins from sodium dodecyl sulfate-polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radioiodinated protein-A
    • W.N. Burnette Western blotting - electrophoretic transfer of proteins from sodium dodecyl sulfate-polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radioiodinated protein-A Anal. Biochem. 112 1981 195 203
    • (1981) Anal. Biochem. , vol.112 , pp. 195-203
    • Burnette, W.N.1
  • 36
    • 36549067170 scopus 로고    scopus 로고
    • Forward-phase and reverse-phase protein microarray
    • DOI 10.1385/1-59745-303-X:363, Microarrays
    • Y. Zong, S. Zhang, H.-T. Chen, Y. Zong, and Y. Shi Forward-phase and reverse-phase protein microarray Methods Mol. Biol. 381 2007 363 373 (Pubitemid 350189899)
    • (2007) Methods in Molecular Biology , vol.381 , pp. 363-373
    • Zong, Y.1    Zhang, S.2    Chen, H.-T.3    Zong, Y.4    Shi, Y.5
  • 37
    • 0037107599 scopus 로고    scopus 로고
    • Covalent immobilization of proteins onto photoactivated polystyrene microtiter plates for enzyme-linked immunosorbent assay procedures
    • DOI 10.1016/S0022-1759(02)00212-0, PII S0022175902002120
    • U. Bora, L. Chugh, and P. Nahar Covalent immobilization of proteins onto photoactivated polystyrene microtiter plates for enzyme-linked immunosorbent assay procedures J. Immunol. Methods 268 2002 171 177 (Pubitemid 35246163)
    • (2002) Journal of Immunological Methods , vol.268 , Issue.2 , pp. 171-177
    • Bora, U.1    Chugh, L.2    Nahar, P.3
  • 38
    • 0036840080 scopus 로고    scopus 로고
    • Multiplexed microsphere-based flow cytometric assays
    • DOI 10.1016/S0301-472X(02)00922-0, PII S0301472X02009220
    • K.L. Kellar, and M.A. Iannone Multiplexed microsphere-based flow cytometric assays Exp. Hematol. 30 2002 1227 1237 (Pubitemid 35287575)
    • (2002) Experimental Hematology , vol.30 , Issue.11 , pp. 1227-1237
    • Kellar, K.L.1    Iannone, M.A.2
  • 39
    • 0035221240 scopus 로고    scopus 로고
    • Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions
    • B.B. Haab, M.J. Dunham, and P.O. Brown Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions Genome Biol. 2 2001
    • (2001) Genome Biol. , vol.2
    • Haab, B.B.1    Dunham, M.J.2    Brown, P.O.3
  • 41
    • 80054986156 scopus 로고    scopus 로고
    • Protein chip for the parallel quantification of high and low abundant biomarkers for sepsis
    • U. Sauer, P. Domnanich, and C. Preininger Protein chip for the parallel quantification of high and low abundant biomarkers for sepsis Anal. Biochem. 419 2011 46 52
    • (2011) Anal. Biochem. , vol.419 , pp. 46-52
    • Sauer, U.1    Domnanich, P.2    Preininger, C.3
  • 42
    • 84864582026 scopus 로고    scopus 로고
    • Signal enhancement in antibody microarrays using quantum dots nanocrystals: Application to potential Alzheimer's disease biomarker screening
    • E. Morales-Narvaez, H. Monton, A. Fomicheva, and A. Merkoci Signal enhancement in antibody microarrays using quantum dots nanocrystals: application to potential Alzheimer's disease biomarker screening Anal. Chem. 84 2012 6821 6827
    • (2012) Anal. Chem. , vol.84 , pp. 6821-6827
    • Morales-Narvaez, E.1    Monton, H.2    Fomicheva, A.3    Merkoci, A.4
  • 43
    • 85027938190 scopus 로고    scopus 로고
    • Porous silicon antibody microarrays for quantitative analysis: Measurement of free and total PSA in clinical plasma samples
    • K. Jaras, B. Adler, A. Tojo, and J. Malm et al. Porous silicon antibody microarrays for quantitative analysis: measurement of free and total PSA in clinical plasma samples Clin. Chim. Acta 414 2012 76 84
    • (2012) Clin. Chim. Acta , vol.414 , pp. 76-84
    • Jaras, K.1    Adler, B.2    Tojo, A.3    Malm, J.4
  • 44
    • 84883552552 scopus 로고    scopus 로고
    • Improved porous silicon microarray based prostate specific antigen immunoassay by optimized surface density of the capture antibody
    • S. Lee, S. Kim, J. Malm, and O.C. Jeong et al. Improved porous silicon microarray based prostate specific antigen immunoassay by optimized surface density of the capture antibody Anal. Chim. Acta. 796 2013 108 114
    • (2013) Anal. Chim. Acta. , vol.796 , pp. 108-114
    • Lee, S.1    Kim, S.2    Malm, J.3    Jeong, O.C.4
  • 45
    • 84866163940 scopus 로고    scopus 로고
    • Quality control for a large-scale study using protein arrays and protein beads to measure immune response in serum and plasma
    • N. Ghevaria, M. Visser, and R. Hoffmann Quality control for a large-scale study using protein arrays and protein beads to measure immune response in serum and plasma Proteomics 12 2012 2802 2807
    • (2012) Proteomics , vol.12 , pp. 2802-2807
    • Ghevaria, N.1    Visser, M.2    Hoffmann, R.3
  • 46
    • 79251542953 scopus 로고    scopus 로고
    • Functional characterization of aquaporin-4 specific t cells: Towards a model for neuromyelitis optica
    • S.R. Kalluri, V. Rothhammer, O. Staszewski, and R. Srivastava et al. Functional characterization of aquaporin-4 specific t cells: towards a model for neuromyelitis optica PLoS ONE 6 2011
    • (2011) PLoS ONE , vol.6
    • Kalluri, S.R.1    Rothhammer, V.2    Staszewski, O.3    Srivastava, R.4
  • 48
    • 37349002428 scopus 로고    scopus 로고
    • Pathogenic potential of IgG binding to water channel extracellular domain in neuromyelitis optica
    • DOI 10.1212/01.WNL.0000289761.64862.ce, PII 0000611420071211000008
    • S.R. Hinson, S.J. Pittock, C.F. Lucchinetti, and S.F. Roemer et al. Pathogenic potential of IgG binding to water channel extracellular domain in neuromyelitis optica Neurology 69 2007 2221 2231 (Pubitemid 350294677)
    • (2007) Neurology , vol.69 , Issue.24 , pp. 2221-2231
    • Hinson, S.R.1    Pittock, S.J.2    Lucchinetti, C.F.3    Roemer, S.F.4    Fryer, J.P.5    Kryzer, T.J.6    Lennon, V.A.7
  • 49
    • 0036156831 scopus 로고    scopus 로고
    • Mildly abnormal retinal function in transgenic mice without Muller cell aquaporin-4 water channels
    • J. Li, R.V. Patil, and A.S. Verkman Mildly abnormal retinal function in transgenic mice without Muller cell aquaporin-4 water channels Invest. Ophthalmol. Vis. Sci. 43 2002 573 579 (Pubitemid 34113244)
    • (2002) Investigative Ophthalmology and Visual Science , vol.43 , Issue.2 , pp. 573-579
    • Li, J.1    Patil, R.V.2    Verkman, A.S.3
  • 50
    • 0035903098 scopus 로고    scopus 로고
    • Impaired hearing in mice lacking aquaporin-4 water channels
    • DOI 10.1074/jbc.M104368200
    • J. Li, and A.S. Verkman Impaired hearing in mice lacking aquaporin-4 water channels J. Biol. Chem. 276 2001 31233 31237 (Pubitemid 37384992)
    • (2001) Journal of Biological Chemistry , vol.276 , Issue.33 , pp. 31233-31237
    • Li, J.1    Verkman, A.S.2
  • 51
    • 51349088616 scopus 로고    scopus 로고
    • Impaired olfaction in mice lacking aquaporin-4 water channels
    • D.C. Lu, H. Zhang, Z. Zador, and A.S. Verkman Impaired olfaction in mice lacking aquaporin-4 water channels FASEB J. 22 2008 3216 3223
    • (2008) FASEB J. , vol.22 , pp. 3216-3223
    • Lu, D.C.1    Zhang, H.2    Zador, Z.3    Verkman, A.S.4
  • 52
    • 40349096428 scopus 로고    scopus 로고
    • Altered blood-brain barrier integrity in adult aquaporin-4 knockout mice
    • DOI 10.1097/WNR.0b013e3282f2b4eb, PII 0000175620080108000001
    • J. Zhou, H. Kong, X. Hua, and M. Xiao et al. Altered blood-brain barrier integrity in adult aquaporin-4 knockout mice Neuroreport 19 2008 1 5 (Pubitemid 351339611)
    • (2008) NeuroReport , vol.19 , Issue.1 , pp. 1-5
    • Zhou, J.1    Kong, H.2    Hua, X.3    Xiao, M.4    Ding, J.5    Hu, G.6
  • 53
    • 79958114265 scopus 로고    scopus 로고
    • Aquaporin-4: Orthogonal array assembly, CNS functions, and role in neuromyelitis optica
    • A.S. Verkman, J. Ratelade, A. Rossi, H. Zhang, and L. Tradtrantip Aquaporin-4: orthogonal array assembly, CNS functions, and role in neuromyelitis optica Acta Pharmacol. Sin. 32 2011 702 710
    • (2011) Acta Pharmacol. Sin. , vol.32 , pp. 702-710
    • Verkman, A.S.1    Ratelade, J.2    Rossi, A.3    Zhang, H.4    Tradtrantip, L.5
  • 54
    • 84863005811 scopus 로고    scopus 로고
    • Rituximab used successfully in the treatment of anti-NMDA receptor encephalitis
    • R. Ikeguchi, K. Shibuya, S. Akiyama, and S. Hino et al. Rituximab used successfully in the treatment of anti-NMDA receptor encephalitis Intern. Med. 51 2012 1585 1589
    • (2012) Intern. Med. , vol.51 , pp. 1585-1589
    • Ikeguchi, R.1    Shibuya, K.2    Akiyama, S.3    Hino, S.4
  • 55
    • 80051532205 scopus 로고    scopus 로고
    • Application of immunosignatures to the assessment of Alzheimer's disease
    • L. Restrepo, P. Stafford, D.M. Magee, and S.A. Johnston Application of immunosignatures to the assessment of Alzheimer's disease Ann. Neurol. 70 2011 286 295
    • (2011) Ann. Neurol. , vol.70 , pp. 286-295
    • Restrepo, L.1    Stafford, P.2    Magee, D.M.3    Johnston, S.A.4
  • 56
    • 84871941545 scopus 로고    scopus 로고
    • N-methyl-d-aspartate receptor antibodies in herpes simplex encephalitis
    • H. Pruess, C. Finke, M. Hoeltje, and J. Hofmann et al. N-methyl-d-aspartate receptor antibodies in herpes simplex encephalitis Ann. Neurol. 72 2012 902 911
    • (2012) Ann. Neurol. , vol.72 , pp. 902-911
    • Pruess, H.1    Finke, C.2    Hoeltje, M.3    Hofmann, J.4
  • 57
    • 77955338789 scopus 로고    scopus 로고
    • Investigation of LGI1 as the antigen in limbic encephalitis previously attributed to potassium channels: A case series
    • M. Lai, M.G.M. Huijbers, E. Lancaster, and F. Graus et al. Investigation of LGI1 as the antigen in limbic encephalitis previously attributed to potassium channels: a case series Lancet Neurol. 9 2010 776 785
    • (2010) Lancet Neurol. , vol.9 , pp. 776-785
    • Lai, M.1    Huijbers, M.G.M.2    Lancaster, E.3    Graus, F.4
  • 58
    • 77956378343 scopus 로고    scopus 로고
    • Antibodies to Kv1 potassium channel-complex proteins leucine-rich, glioma inactivated 1 protein and contactin-associated protein-2 in limbic encephalitis, Morvan's syndrome and acquired neuromyotonia
    • S.R. Irani, S. Alexander, P. Waters, and K.A. Kleopa et al. Antibodies to Kv1 potassium channel-complex proteins leucine-rich, glioma inactivated 1 protein and contactin-associated protein-2 in limbic encephalitis, Morvan's syndrome and acquired neuromyotonia Brain 133 2010 2734 2748
    • (2010) Brain , vol.133 , pp. 2734-2748
    • Irani, S.R.1    Alexander, S.2    Waters, P.3    Kleopa, K.A.4
  • 59
    • 55549135314 scopus 로고    scopus 로고
    • Anti-NMDA-receptor encephalitis: Case series and analysis of the effects of antibodies
    • J. Dalmau, A.J. Gleichman, E.G. Hughes, and J.E. Rossi et al. Anti-NMDA-receptor encephalitis: case series and analysis of the effects of antibodies Lancet Neurol. 7 2008 1091 1098
    • (2008) Lancet Neurol. , vol.7 , pp. 1091-1098
    • Dalmau, J.1    Gleichman, A.J.2    Hughes, E.G.3    Rossi, J.E.4
  • 60
    • 73649129599 scopus 로고    scopus 로고
    • Novel autoimmune hepatitis-specific autoantigens identified using protein microarray technology
    • Q. Song, G. Liu, S. Hu, and Y. Zhang et al. Novel autoimmune hepatitis-specific autoantigens identified using protein microarray technology J. Proteome Res. 9 2010
    • (2010) J. Proteome Res. , vol.9
    • Song, Q.1    Liu, G.2    Hu, S.3    Zhang, Y.4
  • 63
    • 39749121336 scopus 로고    scopus 로고
    • Integral protein microarrays for the identification of lung cancer antigens in Sera that induce a humoral immune response
    • DOI 10.1074/mcp.M700366-MCP200
    • J. Madoz-Gurpide, R. Kuick, H. Wang, D.E. Misek, and S.M. Hanash Integral protein microarrays for the identification of lung cancer antigens in sera that induce a humoral immune response Mol. Cell. Proteomics 7 2008 268 281 (Pubitemid 351298441)
    • (2008) Molecular and Cellular Proteomics , vol.7 , Issue.2 , pp. 268-281
    • Madoz-Gurpide, J.1    Kuick, R.2    Wang, H.3    Misek, D.E.4    Hanash, S.M.5
  • 64
    • 84874845828 scopus 로고    scopus 로고
    • Autoantibody signatures involving glycolysis and splicesome proteins precede a diagnosis of breast cancer among postmenopausal women
    • J.J. Ladd, T. Chao, M.M. Johnson, and J. Qiu et al. Autoantibody signatures involving glycolysis and splicesome proteins precede a diagnosis of breast cancer among postmenopausal women Cancer Res. 73 2013 1502 1513
    • (2013) Cancer Res. , vol.73 , pp. 1502-1513
    • Ladd, J.J.1    Chao, T.2    Johnson, M.M.3    Qiu, J.4
  • 65
    • 67651245201 scopus 로고    scopus 로고
    • Protein arrays as tools for serum autoantibody marker discovery in cancer
    • G. Kijanka, and D. Murphy Protein arrays as tools for serum autoantibody marker discovery in cancer J. Proteome 72 2009 936 944
    • (2009) J. Proteome , vol.72 , pp. 936-944
    • Kijanka, G.1    Murphy, D.2
  • 66
    • 84871999414 scopus 로고    scopus 로고
    • Development of a microarray detection method for galectin cancer proteins based on ligand binding
    • H. van Hattum, N.I. Martin, R. Ruijtenbeek, and R.J. Pieters Development of a microarray detection method for galectin cancer proteins based on ligand binding Anal. Biochem. 434 2013 99 104
    • (2013) Anal. Biochem. , vol.434 , pp. 99-104
    • Van Hattum, H.1    Martin, N.I.2    Ruijtenbeek, R.3    Pieters, R.J.4
  • 67
    • 11144241063 scopus 로고    scopus 로고
    • Galectins as modulators of tumour progression
    • DOI 10.1038/nrc1527
    • F.T. Liu, and G.A. Rabinovich Galectins as modulators of tumour progression Nat. Rev. Cancer 5 2005 29 41 (Pubitemid 40052323)
    • (2005) Nature Reviews Cancer , vol.5 , Issue.1 , pp. 29-41
    • Liu, F.-T.1    Rabinovich, G.A.2
  • 68
    • 84870657360 scopus 로고    scopus 로고
    • Autoimmune hepatitis: What must be said
    • I.R. Mackay Autoimmune hepatitis: what must be said Exp. Mol. Pathol. 93 2012 350 353
    • (2012) Exp. Mol. Pathol. , vol.93 , pp. 350-353
    • Mackay, I.R.1
  • 69
    • 84874980560 scopus 로고    scopus 로고
    • The pathogenesis of the antiphospholipid syndrome
    • B. Giannakopoulos, and S.A. Krilis The pathogenesis of the antiphospholipid syndrome N. Engl. J. Med. 368 2013 1033 1044
    • (2013) N. Engl. J. Med. , vol.368 , pp. 1033-1044
    • Giannakopoulos, B.1    Krilis, S.A.2
  • 70
    • 84890058195 scopus 로고    scopus 로고
    • Protein microarray analysis reveals BAFF-binding autoantibodies in systemic lupus erythematosus
    • J.V. Price, D.J. Haddon, D. Kemmer, and G. Delepine et al. Protein microarray analysis reveals BAFF-binding autoantibodies in systemic lupus erythematosus J. Clin. Investig. 123 2013 5135 5145
    • (2013) J. Clin. Investig. , vol.123 , pp. 5135-5145
    • Price, J.V.1    Haddon, D.J.2    Kemmer, D.3    Delepine, G.4
  • 71
    • 71549138357 scopus 로고    scopus 로고
    • Robust-linear-model normalization to reduce technical variability in functional protein microarrays
    • A. Sboner, A. Karpikov, G. Chen, and M. Smith et al. Robust-linear-model normalization to reduce technical variability in functional protein microarrays J. Proteome Res. 8 2009 5451 5464
    • (2009) J. Proteome Res. , vol.8 , pp. 5451-5464
    • Sboner, A.1    Karpikov, A.2    Chen, G.3    Smith, M.4
  • 74
    • 84880607155 scopus 로고    scopus 로고
    • Improving the default data analysis workflow for large autoimmune biomarker discovery studies with protoarrays
    • M. Turewicz, C. May, M. Ahrens, and D. Woitalla et al. Improving the default data analysis workflow for large autoimmune biomarker discovery studies with protoarrays Proteomics 14 2013 2083 2087
    • (2013) Proteomics , vol.14 , pp. 2083-2087
    • Turewicz, M.1    May, C.2    Ahrens, M.3    Woitalla, D.4
  • 76
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • DOI 10.1093/bioinformatics/19.2.185
    • B.M. Bolstad, R.A. Irizarry, M. Astrand, and T.P. Speed A comparison of normalization methods for high density oligonucleotide array data based on variance and bias Bioinformatics 19 2003 185 193 (Pubitemid 36181903)
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 77
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • W. Huber, A. von Heydebreck, H. Sültmann, A. Poustka, and M. Vingron Variance stabilization applied to microarray data calibration and to the quantification of differential expression Bioinformatics 18 Suppl. 1 2002 S96 S104
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Huber, W.1    Von Heydebreck, A.2    Sültmann, H.3    Poustka, A.4    Vingron, M.5
  • 78
    • 82755195845 scopus 로고    scopus 로고
    • Empirical comparison of cross-platform normalization methods for gene expression data
    • J. Rudy, and F. Valafar Empirical comparison of cross-platform normalization methods for gene expression data BMC Bioinforma. 12 2011 467
    • (2011) BMC Bioinforma. , vol.12 , pp. 467
    • Rudy, J.1    Valafar, F.2
  • 80
    • 79952230540 scopus 로고    scopus 로고
    • Removing batch effects in analysis of expression microarray data: An evaluation of six batch adjustment methods
    • C. Chen, K. Grennan, J. Badner, and D. Zhang et al. Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods PLoS ONE 6 2011 e17238
    • (2011) PLoS ONE , vol.6 , pp. 17238
    • Chen, C.1    Grennan, K.2    Badner, J.3    Zhang, D.4
  • 81
    • 33845432928 scopus 로고    scopus 로고
    • Adjusting batch effects in microarray expression data using empirical Bayes methods
    • DOI 10.1093/biostatistics/kxj037
    • W.E. Johnson, C. Li, and A. Rabinovic Adjusting batch effects in microarray expression data using empirical Bayes methods Biostatistics 8 2007 118 127 (Pubitemid 44906106)
    • (2007) Biostatistics , vol.8 , Issue.1 , pp. 118-127
    • Johnson, W.E.1    Li, C.2    Rabinovic, A.3
  • 82
    • 0034568109 scopus 로고    scopus 로고
    • Gene shaving as a method for identifying distinct sets of genes with similar expression patterns
    • (RESEARCH0003)
    • T. Hastie, R. Tibshirani, M.B. Eisen, and A. Alizadeh et al. 'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns Genome Biol. 1 2000 (RESEARCH0003)
    • (2000) Genome Biol. , vol.1
    • Hastie, T.1    Tibshirani, R.2    Eisen, M.B.3    Alizadeh, A.4
  • 84
    • 25444528447 scopus 로고    scopus 로고
    • Feature selection and classification for microarray data analysis: Evolutionary methods for identifying predictive genes
    • T. Jirapech-Umpai, and S. Aitken Feature selection and classification for microarray data analysis: evolutionary methods for identifying predictive genes BMC Bioinforma. 6 2005 148
    • (2005) BMC Bioinforma. , vol.6 , pp. 148
    • Jirapech-Umpai, T.1    Aitken, S.2
  • 85
    • 0038021028 scopus 로고    scopus 로고
    • A comparative study on feature selection and classification methods using gene expression profiles and proteomic patterns
    • H. Liu, J. Li, and L. Wong A comparative study on feature selection and classification methods using gene expression profiles and proteomic patterns Genome Inform. 13 2002 51 60
    • (2002) Genome Inform. , vol.13 , pp. 51-60
    • Liu, H.1    Li, J.2    Wong, L.3
  • 86
    • 33747344944 scopus 로고    scopus 로고
    • Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data
    • I.B. Jeffery, D.G. Higgins, and A.C. Culhane Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data BMC Bioinforma. 7 2006 359
    • (2006) BMC Bioinforma. , vol.7 , pp. 359
    • Jeffery, I.B.1    Higgins, D.G.2    Culhane, A.C.3
  • 87
    • 35748932917 scopus 로고    scopus 로고
    • A review of feature selection techniques in bioinformatics
    • DOI 10.1093/bioinformatics/btm344
    • Y. Saeys, I. Inza, and P. Larrañaga A review of feature selection techniques in bioinformatics Bioinformatics 23 2007 2507 2517 (Pubitemid 350048351)
    • (2007) Bioinformatics , vol.23 , Issue.19 , pp. 2507-2517
    • Saeys, Y.1    Inza, I.2    Larranaga, P.3
  • 88
    • 0031381525 scopus 로고    scopus 로고
    • Wrappers for feature subset selection
    • PII S000437029700043X
    • R. Kohavi, and G. John Wrappers for feature subset selection Artif. Intell. 97 1997 273 324 (Pubitemid 127401107)
    • (1997) Artificial Intelligence , vol.97 , Issue.1-2 , pp. 273-324
    • Kohavi, R.1    John, G.H.2
  • 89
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • DOI 10.1023/A:1010933404324
    • L. Breiman Random forests Mach. Learn. 45 2001 5 32 (Pubitemid 32933532)
    • (2001) Machine Learning , vol.45 , Issue.1 , pp. 5-32
    • Breiman, L.1
  • 90
    • 0037255041 scopus 로고    scopus 로고
    • Evolutionary algorithms for finding optimal gene sets in microarray prediction
    • DOI 10.1093/bioinformatics/19.1.45
    • J.M. Deutsch Evolutionary algorithms for finding optimal gene sets in microarray prediction Bioinformatics 19 2003 45 52 (Pubitemid 36157275)
    • (2003) Bioinformatics , vol.19 , Issue.1 , pp. 45-52
    • Deutsch, J.M.1
  • 91
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machines
    • DOI 10.1023/A:1012487302797
    • I. Guyon, J. Weston, S. Barnhill, and V. Vapnik Gene selection for cancer classification using support vector machines Mach. Learn. 46 2002 389 422 (Pubitemid 34129977)
    • (2002) Machine Learning , vol.46 , Issue.1-3 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 93
    • 0036139278 scopus 로고    scopus 로고
    • Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the GA/KNN method
    • L. Li, C.R. Weinberg, T.A. Darden, and L.G. Pedersen Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method Bioinformatics 17 2001 1131 1142 (Pubitemid 33735339)
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1131-1142
    • Li, L.1    Weinberg, C.R.2    Darden, T.A.3    Pedersen, L.G.4
  • 94
    • 0037245772 scopus 로고    scopus 로고
    • Genetic algorithms applied to multi-class prediction for the analysis of gene expression data
    • DOI 10.1093/bioinformatics/19.1.37
    • C.H. Ooi, and P. Tan Genetic algorithms applied to multi-class prediction for the analysis of gene expression data Bioinformatics 19 2003 37 44 (Pubitemid 36150179)
    • (2003) Bioinformatics , vol.19 , Issue.1 , pp. 37-44
    • Ooi, C.H.1    Tan, P.2
  • 95
    • 0344872506 scopus 로고    scopus 로고
    • Molecular classification of cancer types from microarray data using the combination of genetic algorithms and support vector machines
    • DOI 10.1016/S0014-5793(03)01275-4
    • S. Peng, Q. Xu, X.B. Ling, and X. Peng et al. Molecular classification of cancer types from microarray data using the combination of genetic algorithms and support vector machines FEBS Lett. 555 2003 358 362 (Pubitemid 37486055)
    • (2003) FEBS Letters , vol.555 , Issue.2 , pp. 358-362
    • Peng, S.1    Xu, Q.2    Ling, X.B.3    Peng, X.4    Du, W.5    Chen, L.6
  • 97
    • 30644464444 scopus 로고    scopus 로고
    • Gene selection and classification of microarray data using random forest
    • R. Díaz-Uriarte, and S. Alvarez de Andrés Gene selection and classification of microarray data using random forest BMC Bioinforma. 7 2006 3
    • (2006) BMC Bioinforma. , vol.7 , pp. 3
    • Díaz-Uriarte, R.1    Alvarez De Andrés, S.2
  • 98
    • 35348970485 scopus 로고    scopus 로고
    • GeneSrF and varSelRF: A web-based tool and R package for gene selection and classification using random forest
    • R. Diaz-Uriarte GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest BMC Bioinforma. 8 2007 328
    • (2007) BMC Bioinforma. , vol.8 , pp. 328
    • Diaz-Uriarte, R.1
  • 99
    • 13244289883 scopus 로고    scopus 로고
    • Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes
    • H. Jiang, Y. Deng, H.S. Chen, and L. Tao et al. Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes BMC Bioinforma. 5 2004 81
    • (2004) BMC Bioinforma. , vol.5 , pp. 81
    • Jiang, H.1    Deng, Y.2    Chen, H.S.3    Tao, L.4
  • 100
  • 102
    • 25144494760 scopus 로고    scopus 로고
    • Prediction error estimation: A comparison of resampling methods
    • DOI 10.1093/bioinformatics/bti499
    • A.M. Molinaro, R. Simon, and R.M. Pfeiffer Prediction error estimation: a comparison of resampling methods Bioinformatics 21 2005 3301 3307 (Pubitemid 41418445)
    • (2005) Bioinformatics , vol.21 , Issue.15 , pp. 3301-3307
    • Molinaro, A.M.1    Simon, R.2    Pfeiffer, R.M.3
  • 103
    • 34447331698 scopus 로고    scopus 로고
    • Classification based upon gene expression data: Bias and precision of error rates
    • DOI 10.1093/bioinformatics/btm117
    • I.A. Wood, P.M. Visscher, and K.L. Mengersen Classification based upon gene expression data: bias and precision of error rates Bioinformatics 23 2007 1363 1370 (Pubitemid 47050518)
    • (2007) Bioinformatics , vol.23 , Issue.11 , pp. 1363-1370
    • Wood, I.A.1    Visscher, P.M.2    Mengersen, K.L.3
  • 105
    • 78651275182 scopus 로고    scopus 로고
    • Reactome: A database of reactions, pathways and biological processes
    • D. Croft, G. O'Kelly, G. Wu, and R. Haw et al. Reactome: a database of reactions, pathways and biological processes Nucleic Acids Res. 39 2011 D691 D697
    • (2011) Nucleic Acids Res. , vol.39
    • Croft, D.1    O'Kelly, G.2    Wu, G.3    Haw, R.4
  • 106
    • 58149177166 scopus 로고    scopus 로고
    • Reactome knowledgebase of human biological pathways and processes
    • L. Matthews, G. Gopinath, M. Gillespie, and M. Caudy et al. Reactome knowledgebase of human biological pathways and processes Nucleic Acids Res. 37 2009 D619 D622
    • (2009) Nucleic Acids Res. , vol.37
    • Matthews, L.1    Gopinath, G.2    Gillespie, M.3    Caudy, M.4
  • 108
    • 0030921594 scopus 로고    scopus 로고
    • A database for post-genome analysis
    • DOI 10.1016/S0168-9525(97)01223-7
    • M. Kanehisa A database for post-genome analysis Trends Genet. 13 1997 375 376 (Pubitemid 27376679)
    • (1997) Trends in Genetics , vol.13 , Issue.9 , pp. 375-376
    • Kanehisa, M.1
  • 110
    • 0034666108 scopus 로고    scopus 로고
    • STRING: A web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
    • B. Snel, G. Lehmann, P. Bork, and M.A. Huynen STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene Nucleic Acids Res. 28 2000 3442 3444
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3442-3444
    • Snel, B.1    Lehmann, G.2    Bork, P.3    Huynen, M.A.4


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