메뉴 건너뛰기




Volumn 12, Issue 1, 2011, Pages

Empirical comparison of cross-platform normalization methods for gene expression data

Author keywords

[No Author keywords available]

Indexed keywords

EMPIRICAL - COMPARISONS; GENE EXPRESSION DATA; HIGH THROUGHPUT; MICROARRAY TECHNOLOGIES; NORMALIZATION METHODS; PLATFORM EFFECTS; PUBLIC DATABASE; SIMULTANEOUS MEASUREMENT;

EID: 82755195845     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-467     Document Type: Article
Times cited : (80)

References (61)
  • 1
    • 0028806048 scopus 로고
    • Qantitative monitoring of gene expression patterns with a complementary DNA microarray
    • 10.1126/science.270.5235.467, 7569999
    • Schena M, Shalon D, Davis RW, Brown P. Qantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995, 270:467-479. 10.1126/science.270.5235.467, 7569999.
    • (1995) Science , vol.270 , pp. 467-479
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.4
  • 2
    • 0028789793 scopus 로고
    • Serial analysis of gene expression
    • 10.1126/science.270.5235.484, 7570003
    • Velculescu VE, Zhang L, Vogelstein B, Kinzler KW. Serial analysis of gene expression. Science 1995, 270(5235):484-487. 10.1126/science.270.5235.484, 7570003.
    • (1995) Science , vol.270 , Issue.5235 , pp. 484-487
    • Velculescu, V.E.1    Zhang, L.2    Vogelstein, B.3    Kinzler, K.W.4
  • 3
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • 10.1038/nrg2484, 2949280, 19015660
    • Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nature Reviews Genetics 2009, 10:57-63. 10.1038/nrg2484, 2949280, 19015660.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 4
    • 33646874546 scopus 로고    scopus 로고
    • The molecular portraits of breast tumors are conserved across microarray platforms
    • 10.1186/1471-2164-7-96, 1468408, 16643655
    • Hu Z, Fan C, Oh D, Marron J, He X, Qaqish B, Livasy C, Carey L, Reynolds E, Dressler L. The molecular portraits of breast tumors are conserved across microarray platforms. BMC Genomics 2006, 7:96. 10.1186/1471-2164-7-96, 1468408, 16643655.
    • (2006) BMC Genomics , vol.7 , pp. 96
    • Hu, Z.1    Fan, C.2    Oh, D.3    Marron, J.4    He, X.5    Qaqish, B.6    Livasy, C.7    Carey, L.8    Reynolds, E.9    Dressler, L.10
  • 5
    • 13244289883 scopus 로고    scopus 로고
    • Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes
    • 10.1186/1471-2105-5-81, 476733, 15217521
    • Jiang H, Deng Y, Chen H, Tao L, Sha Q. Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes. BMC Bioinformatics 2004, 5:81. 10.1186/1471-2105-5-81, 476733, 15217521.
    • (2004) BMC Bioinformatics , vol.5 , pp. 81
    • Jiang, H.1    Deng, Y.2    Chen, H.3    Tao, L.4    Sha, Q.5
  • 6
    • 27844594381 scopus 로고    scopus 로고
    • Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes
    • 10.1186/1471-2105-6-265, 1312314, 16271137
    • Warnat P, Eils R, Brors B. Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes. BMC Bioinformatics 2005, 6:265. 10.1186/1471-2105-6-265, 1312314, 16271137.
    • (2005) BMC Bioinformatics , vol.6 , pp. 265
    • Warnat, P.1    Eils, R.2    Brors, B.3
  • 7
    • 33644875376 scopus 로고    scopus 로고
    • Microarray expression technology: from start to finish
    • 10.2217/14622416.7.1.123, 16354130
    • Elvidge G. Microarray expression technology: from start to finish. Pharmacogenomics 2006, 7:123-134. 10.2217/14622416.7.1.123, 16354130.
    • (2006) Pharmacogenomics , vol.7 , pp. 123-134
    • Elvidge, G.1
  • 8
    • 3543068702 scopus 로고    scopus 로고
    • Microarray platforms-comparisons and contrasts
    • 10.1517/14622416.5.5.487, 15212585
    • Hardiman G. Microarray platforms-comparisons and contrasts. Pharmacogenomics 2004, 5(5):487-502. 10.1517/14622416.5.5.487, 15212585.
    • (2004) Pharmacogenomics , vol.5 , Issue.5 , pp. 487-502
    • Hardiman, G.1
  • 10
  • 12
    • 33747884345 scopus 로고    scopus 로고
    • Gene Expression Omnibus (GEO): Microarray data storage, submission, retrieval, and analysis
    • 1619900, 16939800
    • Barrett T, Edgar R. Gene Expression Omnibus (GEO): Microarray data storage, submission, retrieval, and analysis. Methods Enzymol 2006, 411:352-369. 1619900, 16939800.
    • (2006) Methods Enzymol , vol.411 , pp. 352-369
    • Barrett, T.1    Edgar, R.2
  • 13
    • 27144486151 scopus 로고    scopus 로고
    • Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms
    • 10.1093/nar/gki890, 1258170, 16237126
    • Barnes M, Freudenberg J, Thompson S, Aronow B, Pavlidis P. Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms. Nucleic Acids Research 2005, 33(18):5914. 10.1093/nar/gki890, 1258170, 16237126.
    • (2005) Nucleic Acids Research , vol.33 , Issue.18 , pp. 5914
    • Barnes, M.1    Freudenberg, J.2    Thompson, S.3    Aronow, B.4    Pavlidis, P.5
  • 14
    • 33746108159 scopus 로고    scopus 로고
    • A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
    • 10.1038/nbt1217, 16823376
    • Kuo W, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple M, Maysuria M, Serikawa K, Lee S. A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies. Nature Biotechnology 2006, 24(7):832-840. 10.1038/nbt1217, 16823376.
    • (2006) Nature Biotechnology , vol.24 , Issue.7 , pp. 832-840
    • Kuo, W.1    Liu, F.2    Trimarchi, J.3    Punzo, C.4    Lombardi, M.5    Sarang, J.6    Whipple, M.7    Maysuria, M.8    Serikawa, K.9    Lee, S.10
  • 15
    • 18244378238 scopus 로고    scopus 로고
    • Independence and reproducibility across microarray platforms
    • 10.1038/nmeth757, 15846360
    • Larkin J, Frank B, Gavras H, Sultana R, Quackenbush J. Independence and reproducibility across microarray platforms. Nature Methods 2005, 2:337. 10.1038/nmeth757, 15846360.
    • (2005) Nature Methods , vol.2 , pp. 337
    • Larkin, J.1    Frank, B.2    Gavras, H.3    Sultana, R.4    Quackenbush, J.5
  • 19
    • 0002922661 scopus 로고    scopus 로고
    • Microarray results: how accurate are they?
    • 10.1186/1471-2105-3-22, 126254, 12194703
    • Kothapalli R, Yoder S, Mane S, Loughran T. Microarray results: how accurate are they?. BMC Bioinformatics 2002, 3:22. 10.1186/1471-2105-3-22, 126254, 12194703.
    • (2002) BMC Bioinformatics , vol.3 , pp. 22
    • Kothapalli, R.1    Yoder, S.2    Mane, S.3    Loughran, T.4
  • 20
    • 0036211063 scopus 로고    scopus 로고
    • Analysis of matched mRNA measurements from two different microarray technologies
    • 10.1093/bioinformatics/18.3.405, 11934739
    • Kuo W, Jenssen T, Butte A, Ohno-Machado L, Kohane IS. Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics 2002, 18(3):405-412. 10.1093/bioinformatics/18.3.405, 11934739.
    • (2002) Bioinformatics , vol.18 , Issue.3 , pp. 405-412
    • Kuo, W.1    Jenssen, T.2    Butte, A.3    Ohno-Machado, L.4    Kohane, I.S.5
  • 21
    • 0141905890 scopus 로고    scopus 로고
    • Evaluation of gene expression measurements from commercial microarray platforms
    • 10.1093/nar/gkg763, 206463, 14500831
    • Tan P, Downey T, Jr ES, Xu P, Fu D, Dimitrov D, Lempicki R, Raaka B, Cam M. Evaluation of gene expression measurements from commercial microarray platforms. Nucleic Acids Research 2003, 31(19):5676. 10.1093/nar/gkg763, 206463, 14500831.
    • (2003) Nucleic Acids Research , vol.31 , Issue.19 , pp. 5676
    • Tan, P.1    Downey, T.2    Jr, E.S.3    Xu, P.4    Fu, D.5    Dimitrov, D.6    Lempicki, R.7    Raaka, B.8    Cam, M.9
  • 22
    • 25444515422 scopus 로고    scopus 로고
    • Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements
    • 10.1186/1471-2105-6-107, 1127107, 15850491
    • Carter S, Eklund A, Mecham B, Kohane I, Szallasi Z. Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. BMC Bioinformatics 2005, 6:107. 10.1186/1471-2105-6-107, 1127107, 15850491.
    • (2005) BMC Bioinformatics , vol.6 , pp. 107
    • Carter, S.1    Eklund, A.2    Mecham, B.3    Kohane, I.4    Szallasi, Z.5
  • 23
    • 34347337394 scopus 로고    scopus 로고
    • Review of the literature examining the correlation among DNA microarray technologies
    • 10.1002/em.20290, 2682332, 17370338
    • Yauk C, Berndt M. Review of the literature examining the correlation among DNA microarray technologies. Environmental and Molecular Mutagenesis 2007, 48(5):380-394. 10.1002/em.20290, 2682332, 17370338.
    • (2007) Environmental and Molecular Mutagenesis , vol.48 , Issue.5 , pp. 380-394
    • Yauk, C.1    Berndt, M.2
  • 24
    • 50649121884 scopus 로고    scopus 로고
    • MAID: an effect size based model for microarray data integration across laboratories and platforms
    • 10.1186/1471-2105-9-305, 2483727, 18616827
    • Borozan I, Chen L, Paeper B, Heathcote J, Edwards A, Katze M, Zhang Z, McGilvray I. MAID: an effect size based model for microarray data integration across laboratories and platforms. BMC Bioinformatics 2008, 9:305. 10.1186/1471-2105-9-305, 2483727, 18616827.
    • (2008) BMC Bioinformatics , vol.9 , pp. 305
    • Borozan, I.1    Chen, L.2    Paeper, B.3    Heathcote, J.4    Edwards, A.5    Katze, M.6    Zhang, Z.7    McGilvray, I.8
  • 25
    • 38849106351 scopus 로고    scopus 로고
    • A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments
    • 10.1093/bioinformatics/btm620, 18204063
    • Hong F, Breitling R. A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments. Bioinformatics 2008, 24(3):374. 10.1093/bioinformatics/btm620, 18204063.
    • (2008) Bioinformatics , vol.24 , Issue.3 , pp. 374
    • Hong, F.1    Breitling, R.2
  • 27
    • 53149135477 scopus 로고    scopus 로고
    • Key issues in conducting a meta-analysis of gene expression microarray datasets
    • 10.1371/journal.pmed.0050184, 2528050, 18767902
    • Ramasamy A, Mondry A, Holmes C, Altman D. Key issues in conducting a meta-analysis of gene expression microarray datasets. PLoS Medicine 2008, 5(9):e184. 10.1371/journal.pmed.0050184, 2528050, 18767902.
    • (2008) PLoS Medicine , vol.5 , Issue.9
    • Ramasamy, A.1    Mondry, A.2    Holmes, C.3    Altman, D.4
  • 28
    • 34147113900 scopus 로고    scopus 로고
    • A meta-analysis of human embryonic stem cells transcriptome integrated into a web-based expression atlas
    • 10.1634/stemcells.2006-0352, 1906587, 17204602
    • Assou S, Carrour TL, Tondeur S, Ström S, Gabelle A, Marty S, Nadal L, Pantesco V, Rème T, Hugnot J. A meta-analysis of human embryonic stem cells transcriptome integrated into a web-based expression atlas. Stem Cells 2007, 25(4):961-973. 10.1634/stemcells.2006-0352, 1906587, 17204602.
    • (2007) Stem Cells , vol.25 , Issue.4 , pp. 961-973
    • Assou, S.1    Carrour, T.L.2    Tondeur, S.3    Ström, S.4    Gabelle, A.5    Marty, S.6    Nadal, L.7    Pantesco, V.8    Rème, T.9    Hugnot, J.10
  • 29
    • 23744510853 scopus 로고    scopus 로고
    • Meta-analysis of microarray data on pancreatic cancer defines a set of commonly dysregulated genes
    • 10.1038/sj.onc.1208696, 15897887
    • Grützmann R, Boriss H, Ammerpohl O, Lüttges J, Kalthoff H, Schackert H, Klöppel G, Saeger H, Pilarsky C. Meta-analysis of microarray data on pancreatic cancer defines a set of commonly dysregulated genes. Oncogene 2005, 24(32):5079-5088. 10.1038/sj.onc.1208696, 15897887.
    • (2005) Oncogene , vol.24 , Issue.32 , pp. 5079-5088
    • Grützmann, R.1    Boriss, H.2    Ammerpohl, O.3    Lüttges, J.4    Kalthoff, H.5    Schackert, H.6    Klöppel, G.7    Saeger, H.8    Pilarsky, C.9
  • 31
    • 0036682376 scopus 로고    scopus 로고
    • Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer
    • Rhodes D, Barrette T, Rubin M, Ghosh D, Chinnaiyan A. Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer. Cancer Research 2002, 62(15):4427.
    • (2002) Cancer Research , vol.62 , Issue.15 , pp. 4427
    • Rhodes, D.1    Barrette, T.2    Rubin, M.3    Ghosh, D.4    Chinnaiyan, A.5
  • 32
    • 84859103907 scopus 로고    scopus 로고
    • Meta-analysis of kindling-induced gene expression changes in the rat hippocampus
    • 2858611, 20582280
    • Rogic S, Pavlidis P. Meta-analysis of kindling-induced gene expression changes in the rat hippocampus. Frontiers in Neuroscience 2009, 3:53. 2858611, 20582280.
    • (2009) Frontiers in Neuroscience , vol.3 , pp. 53
    • Rogic, S.1    Pavlidis, P.2
  • 33
  • 34
    • 42649134796 scopus 로고    scopus 로고
    • Merging two gene-expression studies via cross-platform normalization
    • 10.1093/bioinformatics/btn083, 18325927
    • Shabalin A, Tjelmeland H, Fan C, Perou C, Nobel A. Merging two gene-expression studies via cross-platform normalization. Bioinformatics 2008, 24(9):1154. 10.1093/bioinformatics/btn083, 18325927.
    • (2008) Bioinformatics , vol.24 , Issue.9 , pp. 1154
    • Shabalin, A.1    Tjelmeland, H.2    Fan, C.3    Perou, C.4    Nobel, A.5
  • 35
    • 0347090327 scopus 로고    scopus 로고
    • Adjustment of systematic microarray data biases
    • 10.1093/bioinformatics/btg385, 14693816
    • Benito M, Parker J, Du Q, Wu J, Xiang D, Perou C, Marron J. Adjustment of systematic microarray data biases. Bioinformatics 2004, 20:105. 10.1093/bioinformatics/btg385, 14693816.
    • (2004) Bioinformatics , vol.20 , pp. 105
    • Benito, M.1    Parker, J.2    Du, Q.3    Wu, J.4    Xiang, D.5    Perou, C.6    Marron, J.7
  • 36
    • 55249088991 scopus 로고    scopus 로고
    • Empirical Bayes accommodation of batch-effects in microarray data using identical replicate reference samples: application to RNA expression profiling of blood from Duchenne muscular dystrophy patients
    • 10.1186/1471-2164-9-494, 2576259, 18937867
    • Walker W, Liao I, Gilbert D, Wong B, Pollard KS, McCulloch CE, Lit L, Sharp FR. Empirical Bayes accommodation of batch-effects in microarray data using identical replicate reference samples: application to RNA expression profiling of blood from Duchenne muscular dystrophy patients. BMC Genomics 2008, 9:494. 10.1186/1471-2164-9-494, 2576259, 18937867.
    • (2008) BMC Genomics , vol.9 , pp. 494
    • Walker, W.1    Liao, I.2    Gilbert, D.3    Wong, B.4    Pollard, K.S.5    McCulloch, C.E.6    Lit, L.7    Sharp, F.R.8
  • 38
    • 69849112774 scopus 로고    scopus 로고
    • WebArrayDB: cross-platform microarray data analysis and public data repository
    • 10.1093/bioinformatics/btp430, 2735672, 19602526
    • Xia XQ, Mcclelland M, Porwollik S, Song W, Cong X, Wang Y. WebArrayDB: cross-platform microarray data analysis and public data repository. Bioinformatics 2009, 25(18):2425-2429. 10.1093/bioinformatics/btp430, 2735672, 19602526.
    • (2009) Bioinformatics , vol.25 , Issue.18 , pp. 2425-2429
    • Xia, X.Q.1    Mcclelland, M.2    Porwollik, S.3    Song, W.4    Cong, X.5    Wang, Y.6
  • 39
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • 10.1093/bioinformatics/19.2.185, 12538238
    • Bolstad B, Irizarry R, Astrand M, Speed T. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19(2):185. 10.1093/bioinformatics/19.2.185, 12538238.
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 185
    • Bolstad, B.1    Irizarry, R.2    Astrand, M.3    Speed, T.4
  • 40
    • 77956265904 scopus 로고    scopus 로고
    • DSGeo: software tools for cross-platform analysis of gene expression data in GEO
    • 10.1016/j.jbi.2010.04.007, 2934864, 20435161
    • Lacson R, Pitzer E, Kim J, Galante P, Hinske C, Ohno-Machado L. DSGeo: software tools for cross-platform analysis of gene expression data in GEO. Journal of Biomedical Informatics 2010, 43:709-715. 10.1016/j.jbi.2010.04.007, 2934864, 20435161.
    • (2010) Journal of Biomedical Informatics , vol.43 , pp. 709-715
    • Lacson, R.1    Pitzer, E.2    Kim, J.3    Galante, P.4    Hinske, C.5    Ohno-Machado, L.6
  • 41
    • 70849131666 scopus 로고    scopus 로고
    • ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization
    • 10.1186/1471-2105-10-358, 2776026, 19863798
    • Glaab E, Garibaldi J, Krasnogor N. ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization. BMC Bioinformatics 2009, 10:358. 10.1186/1471-2105-10-358, 2776026, 19863798.
    • (2009) BMC Bioinformatics , vol.10 , pp. 358
    • Glaab, E.1    Garibaldi, J.2    Krasnogor, N.3
  • 43
    • 70449588688 scopus 로고    scopus 로고
    • Can survival prediction be improved by merging gene expression data sets?
    • 10.1371/journal.pone.0007431, 2761544, 19851466
    • Yasrebi H, Sperisen P, Praz V, Bucher P. Can survival prediction be improved by merging gene expression data sets?. PLoS One 2009, 4(10):e7431. 10.1371/journal.pone.0007431, 2761544, 19851466.
    • (2009) PLoS One , vol.4 , Issue.10
    • Yasrebi, H.1    Sperisen, P.2    Praz, V.3    Bucher, P.4
  • 45
    • 79951480123 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, R Development Core Team
    • R Development Core Team R: A Language and Environment for Statistical Computing 2010, R Foundation for Statistical Computing, Vienna, Austria, http://www.R-project.org. ISBN 3-900051-07-0, R Development Core Team.
    • (2010) R: A Language and Environment for Statistical Computing
  • 46
    • 84870486790 scopus 로고    scopus 로고
    • Comprehensive R Archive Network
    • Comprehensive R Archive Network. , http://cran.r-project.org
  • 47
    • 0018079655 scopus 로고
    • Basic principles of ROC analysis
    • 10.1016/S0001-2998(78)80014-2, 112681
    • Metz C. Basic principles of ROC analysis. Seminars in Nuclear Medicine 1978, 8(4):283-298. 10.1016/S0001-2998(78)80014-2, 112681.
    • (1978) Seminars in Nuclear Medicine , vol.8 , Issue.4 , pp. 283-298
    • Metz, C.1
  • 48
    • 84859099329 scopus 로고    scopus 로고
    • Lawstat: An R package for biostatistics, public policy, and law
    • [R package version 2.3]
    • Noguchi K, Hui WLW, Gel YR, Gastwirth JL, Miao W. lawstat: An R package for biostatistics, public policy, and law. 2009, http://CRAN.R-project.org/package=lawstat. [R package version 2.3].
    • (2009)
    • Noguchi, K.1    Hui, W.L.W.2    Gel, Y.R.3    Gastwirth, J.L.4    Miao, W.5
  • 49
    • 0037388263 scopus 로고    scopus 로고
    • Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays
    • 10.1093/nar/gkg283, 152799, 12655013
    • Hekstra D, Taussig A, Magnasco M, Naef F. Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays. Nucleic Acids Research 2003, 31(7):1962. 10.1093/nar/gkg283, 152799, 12655013.
    • (2003) Nucleic Acids Research , vol.31 , Issue.7 , pp. 1962
    • Hekstra, D.1    Taussig, A.2    Magnasco, M.3    Naef, F.4
  • 50
    • 0037934649 scopus 로고    scopus 로고
    • Modeling of DNA microarray data by using physical properties of hybridization
    • Held G, Grinstein G, Tu Y. Modeling of DNA microarray data by using physical properties of hybridization. Proceedings of the National Academy of Sciences 2003, 100(13):7575.
    • (2003) Proceedings of the National Academy of Sciences , vol.100 , Issue.13 , pp. 7575
    • Held, G.1    Grinstein, G.2    Tu, Y.3
  • 53
    • 34547871639 scopus 로고    scopus 로고
    • GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor
    • 10.1093/bioinformatics/btm254, 17496320
    • Davis S, Meltzer P. GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor. Bioinformatics 2007, 23(14):1846. 10.1093/bioinformatics/btm254, 17496320.
    • (2007) Bioinformatics , vol.23 , Issue.14 , pp. 1846
    • Davis, S.1    Meltzer, P.2
  • 55
    • 1342288026 scopus 로고    scopus 로고
    • Affy: analysis of Affymetrix GeneChip data at the probe level
    • 10.1093/bioinformatics/btg405, 14960456
    • Gautier L, Cope L, Bolstad B, Irizarry R. Affy: analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 2004, 20(3):307. 10.1093/bioinformatics/btg405, 14960456.
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 307
    • Gautier, L.1    Cope, L.2    Bolstad, B.3    Irizarry, R.4
  • 56
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Smyth G. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 2004, 3.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3
    • Smyth, G.1
  • 57
    • 34147123145 scopus 로고    scopus 로고
    • The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments
    • Storey J, Dai J, Leek J. The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments. Biostatistics 2007, 8(2):414.
    • (2007) Biostatistics , vol.8 , Issue.2 , pp. 414
    • Storey, J.1    Dai, J.2    Leek, J.3
  • 58
    • 0024521543 scopus 로고
    • A concordance correlation coefficient to evaluate reproducibility
    • 10.2307/2532051, 2720055
    • Lin LIK. A concordance correlation coefficient to evaluate reproducibility. Biometrics 1989, 45:255-268. 10.2307/2532051, 2720055.
    • (1989) Biometrics , vol.45 , pp. 255-268
    • Lin, L.I.K.1
  • 60
    • 54249151094 scopus 로고    scopus 로고
    • A one-step smoothing Newton method for second-order cone programming
    • Chi X, Liu S. A one-step smoothing Newton method for second-order cone programming. Journal of Computational and Applied Mathematics 2009, 223:114-123.
    • (2009) Journal of Computational and Applied Mathematics , vol.223 , pp. 114-123
    • Chi, X.1    Liu, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.