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Volumn 5, Issue 7, 2014, Pages 1181-1186

On the coupling between the collective dynamics of proteins and their hydration water

Author keywords

dispersion curves; longitudinal modes; molecular dynamics simulations; neutron and X ray scattering; transverse modes

Indexed keywords

DISPERSION CURVES; EXPERIMENTAL TECHNIQUES; LONGITUDINAL MODES; MOLECULAR DYNAMICS SIMULATIONS; PICOSECOND TIME SCALE; PROPAGATION VELOCITIES; ROTATIONAL RELAXATIONS; TRANSVERSE MODE;

EID: 84898073707     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz500023e     Document Type: Article
Times cited : (65)

References (49)
  • 1
    • 0004152486 scopus 로고    scopus 로고
    • Royal Society of Chemistry: Cambridge, U.K.
    • Franks, F. Water: A Matrix of Life; Royal Society of Chemistry: Cambridge, U.K., 2000.
    • (2000) Water: A Matrix of Life
    • Franks, F.1
  • 2
    • 38849196324 scopus 로고    scopus 로고
    • Water as an active constituent in cell biology
    • DOI 10.1021/cr068037a
    • Ball, P. Water as an Active Constituent in Cell Biology Chem. Rev. 2008, 108, 74-108 (Pubitemid 351187472)
    • (2008) Chemical Reviews , vol.108 , Issue.1 , pp. 74-108
    • Ball, P.1
  • 3
    • 0025877453 scopus 로고
    • Protein Hydration and Function
    • Rupley, J. A.; Careri, G. Protein Hydration and Function Adv. Protein Chem. 1991, 41, 37-172
    • (1991) Adv. Protein Chem. , vol.41 , pp. 37-172
    • Rupley, J.A.1    Careri, G.2
  • 10
    • 41849097415 scopus 로고    scopus 로고
    • Coincidence of dynamical transitions in a soluble protein and its hydration water: Direct measurements by neutron scattering and MD simulations
    • DOI 10.1021/ja710526r
    • Wood, K.; Frölich, A.; Paciaroni, A.; Moulin, M.; Hartlein, M.; Zaccai, G.; Tobias, D. J.; Weik, M. Coincidence of Dynamical Transitions in a Soluble Protein and its Hydration Water: Direct Measurements by Neutron Scattering and MD Simulations J. Am. Chem. Soc. 2008, 130, 4586-4587 (Pubitemid 351500086)
    • (2008) Journal of the American Chemical Society , vol.130 , Issue.14 , pp. 4586-4587
    • Wood, K.1    Frolich, A.2    Paciaroni, A.3    Moulin, M.4    Hartlein, M.5    Zaccai, G.6    Tobias, D.J.7    Weik, M.8
  • 13
    • 79961162351 scopus 로고    scopus 로고
    • Extended Frequency Range Depolarized Light Scattering Study of N -Acetyl-leucine-methylamide-Water Solutions
    • Perticaroli, S.; Comez, L.; Paolantoni, M.; Sassi, P.; Morresi, A.; Fioretto, D. Extended Frequency Range Depolarized Light Scattering Study of N -Acetyl-leucine-methylamide-Water Solutions J. Am. Chem. Soc. 2011, 133, 12063-12068
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 12063-12068
    • Perticaroli, S.1    Comez, L.2    Paolantoni, M.3    Sassi, P.4    Morresi, A.5    Fioretto, D.6
  • 18
    • 0037203526 scopus 로고    scopus 로고
    • Single-Particle and Collective Dynamics of Protein Hydration Water: A Molecular Dynamics Study
    • Tarek, M.; Tobias, D. J. Single-Particle and Collective Dynamics of Protein Hydration Water: A Molecular Dynamics Study Phys. Rev. Lett. 2002, 89, 275501-275504
    • (2002) Phys. Rev. Lett. , vol.89 , pp. 275501-275504
    • Tarek, M.1    Tobias, D.J.2
  • 20
    • 58149308674 scopus 로고    scopus 로고
    • Origin of Slow Relaxation Following Photoexcitation of W7 in Myoglobin and the Dynamics of Its Hydration Layer
    • Li, T. P.; Hassanali, A. A.; Singer, S. J. Origin of Slow Relaxation Following Photoexcitation of W7 in Myoglobin and the Dynamics of Its Hydration Layer J. Phys.Chem. B 2008, 112, 16121-16134
    • (2008) J. Phys.Chem. B , vol.112 , pp. 16121-16134
    • Li, T.P.1    Hassanali, A.A.2    Singer, S.J.3
  • 21
    • 0036534542 scopus 로고    scopus 로고
    • Protein-water interactions in a dynamic world
    • DOI 10.1016/S0968-0004(02)02067-4, PII S0968000402020674
    • Mattos, C. Protein-Water Interactions in a Dynamic World Trends Biochem. Sci. 2002, 27, 203-208 (Pubitemid 34270769)
    • (2002) Trends in Biochemical Sciences , vol.27 , Issue.4 , pp. 203-208
    • Mattos, C.1
  • 22
    • 84874425448 scopus 로고    scopus 로고
    • Inelastic X-ray Scattering Studies of the Short-Time Collective Vibrational Motions in Hydrated Lysozyme Powders and Their Possible Relation to Enzymatic Function
    • Wang, Z.; Bertrand, C. E.; Chiang, W.-S.; Fratini, E.; Baglioni, P.; Alatas, A.; Alp, E. E.; Chen, S. H. Inelastic X-ray Scattering Studies of the Short-Time Collective Vibrational Motions in Hydrated Lysozyme Powders and Their Possible Relation to Enzymatic Function J. Phys. Chem. B 2013, 117, 1186-1195
    • (2013) J. Phys. Chem. B , vol.117 , pp. 1186-1195
    • Wang, Z.1    Bertrand, C.E.2    Chiang, W.-S.3    Fratini, E.4    Baglioni, P.5    Alatas, A.6    Alp, E.E.7    Chen, S.H.8
  • 24
    • 0033988125 scopus 로고    scopus 로고
    • Solvent mobility and the protein 'glass' transition
    • DOI 10.1038/71231
    • Vitkup, D.; Ringe, D.; Petsko, G. A.; Karplus, M. Solvent Mobility and the Protein 'Glass' Transition Nat. Struct. Biol. 2000, 7, 34-38 (Pubitemid 30043245)
    • (2000) Nature Structural Biology , vol.7 , Issue.1 , pp. 34-38
    • Vitkup, D.1    Ringe, D.2    Petsko, G.A.3    Karplus, M.4
  • 25
    • 10444281683 scopus 로고    scopus 로고
    • Methyl group dynamics as a probe of the protein dynamical transition
    • DOI 10.1021/ja0480623
    • Curtis, J. E.; Tarek, M.; Tobias, D. J. Methyl Group Dynamics As a Probe of the Protein Dynamical Transition J. Am. Chem. Soc. 2004, 126, 15928-15929 (Pubitemid 39642220)
    • (2004) Journal of the American Chemical Society , vol.126 , Issue.49 , pp. 15928-15929
    • Curtis, J.E.1    Tarek, M.2    Tobias, D.J.3
  • 27
    • 19044399611 scopus 로고    scopus 로고
    • Role of Protein-Water Hydrogen Bond Dynamics in the Protein Dynamical Transition
    • Tarek, M.; Tobias, D. J. Role of Protein-Water Hydrogen Bond Dynamics in the Protein Dynamical Transition Phys. Rev. Lett. 2002, 88, 138101-138104
    • (2002) Phys. Rev. Lett. , vol.88 , pp. 138101-138104
    • Tarek, M.1    Tobias, D.J.2
  • 28
    • 0033637521 scopus 로고    scopus 로고
    • The Dynamics of Protein Hydration Water: A Quantitative Comparison of Molecular Dynamics Simulations and Neutron-Scattering Experiments
    • Tarek, M.; Tobias, D. J. The Dynamics of Protein Hydration Water: A Quantitative Comparison of Molecular Dynamics Simulations and Neutron-Scattering Experiments Biophys. J. 2000, 79, 3244-3257
    • (2000) Biophys. J. , vol.79 , pp. 3244-3257
    • Tarek, M.1    Tobias, D.J.2
  • 30
    • 53549094650 scopus 로고    scopus 로고
    • Fingerprints of Amorphous Icelike Behavior in the Vibrational Density of States of Protein Hydration Water
    • Paciaroni, A. Fingerprints of Amorphous Icelike Behavior in the Vibrational Density of States of Protein Hydration Water Phys. Rev. Lett. 2008, 101, 148104
    • (2008) Phys. Rev. Lett. , vol.101 , pp. 148104
    • Paciaroni, A.1
  • 31
    • 79952117821 scopus 로고    scopus 로고
    • Collective Dynamics of Hydrated β-Lactoglobulin by Inelastic X-ray Scattering
    • Yoshida, K.; Hosokawa, S.; Baron, A. Q. R.; Yamaguchi, T. Collective Dynamics of Hydrated β-Lactoglobulin by Inelastic X-ray Scattering J. Chem. Phys. 2010, 133, 134501
    • (2010) J. Chem. Phys. , vol.133 , pp. 134501
    • Yoshida, K.1    Hosokawa, S.2    Baron, A.Q.R.3    Yamaguchi, T.4
  • 32
    • 84888359152 scopus 로고    scopus 로고
    • Spatial Dependence of Protein-Water Collective Hydrogen-Bond Dynamics
    • Heyden, M.; Tobias, D. J. Spatial Dependence of Protein-Water Collective Hydrogen-Bond Dynamics Phys. Rev. Lett. 2013, 111, 218101
    • (2013) Phys. Rev. Lett. , vol.111 , pp. 218101
    • Heyden, M.1    Tobias, D.J.2
  • 34
    • 0001372520 scopus 로고    scopus 로고
    • Viscous versus elastic response of hydrogen-bonded liquids: Collective dynamics in HF
    • Bertolini, D.; Sutmann, G.; Tani, A.; Vallauri, R. Viscous versus Elastic Response of Hydrogen-Bonded Liquids: Collective Dynamics in HF Phys. Rev. Lett. 1998, 81, 2080-2083 (Pubitemid 128623075)
    • (1998) Physical Review Letters , vol.81 , Issue.10 , pp. 2080-2083
    • Bertolini, D.1    Sutmann, G.2    Tani, A.3    Vallauri, R.4
  • 37
    • 36449000062 scopus 로고
    • Nosé-Hoover Chains: The Canonical Ensemble via Continuous Dynamics
    • Martyna, G. J.; Tuckerman, M. E.; Klein, M. L. Nosé-Hoover Chains: The Canonical Ensemble via Continuous Dynamics J. Chem. Phys. 1992, 97, 2635-2643
    • (1992) J. Chem. Phys. , vol.97 , pp. 2635-2643
    • Martyna, G.J.1    Tuckerman, M.E.2    Klein, M.L.3
  • 39
    • 0041784950 scopus 로고    scopus 로고
    • All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
    • MacKerell, A. D., Jr. All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins J. Phys. Chem. B 1998, 102, 3586-3616
    • (1998) J. Phys. Chem. B , vol.102 , pp. 3586-3616
    • Mackerell Jr., A.D.1
  • 41
    • 77749330378 scopus 로고    scopus 로고
    • Protein Elasticity Probed with Two Synchrotron-Based Techniques
    • Leu, B. M. Protein Elasticity Probed with Two Synchrotron-Based Techniques J. Chem. Phys. 2010, 132, 085103
    • (2010) J. Chem. Phys. , vol.132 , pp. 085103
    • Leu, B.M.1
  • 42
    • 4043152215 scopus 로고    scopus 로고
    • Mixing of longitudinal and transverse dynamics in liquid water
    • Sampoli, M.; Ruocco, G.; Sette, F. Mixing of Longitudinal and Transverse Dynamics in Liquid Water Phys. Rev. Lett. 1997, 79, 1678-1681 (Pubitemid 127645560)
    • (1997) Physical Review Letters , vol.79 , Issue.9 , pp. 1678-1681
    • Sampoli, M.1    Ruocco, G.2    Sette, F.3
  • 43
    • 0035420468 scopus 로고    scopus 로고
    • Theory of the Generalized Dynamic Structure Factor of Polyatomic Molecular Fluids Measured by Inelastic X-ray Scattering
    • Liao, C.; Chen, S. H. Theory of the Generalized Dynamic Structure Factor of Polyatomic Molecular Fluids Measured by Inelastic X-ray Scattering Phys. Rev. E 2001, 64, 021205
    • (2001) Phys. Rev. e , vol.64 , pp. 021205
    • Liao, C.1    Chen, S.H.2
  • 44
    • 0000334576 scopus 로고    scopus 로고
    • Analysis of Inelastic X-ray Scattering Spectra of Low-Temperature Water
    • Liao, C. Y.; Chen, S. H.; Sette, F. Analysis of Inelastic X-ray Scattering Spectra of Low-Temperature Water Phys. Rev. E 2000, 61, 1518-1526
    • (2000) Phys. Rev. e , vol.61 , pp. 1518-1526
    • Liao, C.Y.1    Chen, S.H.2    Sette, F.3
  • 45
    • 10344265947 scopus 로고    scopus 로고
    • 2: The Role of Transverse Dynamics
    • 2: The Role of Transverse Dynamics J. Phys.: Condens. Matter 2004, 16, 8519-8530
    • (2004) J. Phys.: Condens. Matter , vol.16 , pp. 8519-8530
    • Pilla, O.1
  • 46
    • 42749102238 scopus 로고    scopus 로고
    • Brillouin Neutron Scattering in Heavy Water: Evidence for Two-Mode Collective Dynamics
    • Sacchetti, F.; Suck, J. B.; Petrillo, C.; Dorner, B. Brillouin Neutron Scattering in Heavy Water: Evidence for Two-Mode Collective Dynamics Phys. Rev. E 2004, 69, 061203
    • (2004) Phys. Rev. e , vol.69 , pp. 061203
    • Sacchetti, F.1    Suck, J.B.2    Petrillo, C.3    Dorner, B.4
  • 47
    • 83455238078 scopus 로고    scopus 로고
    • Low-Frequency Vibrational Spectrum of Water in the Hydration Layer of a Protein: A Molecular Dynamics Simulation Study
    • Sinha, S. K.; Bandyopadhyay, S. Low-Frequency Vibrational Spectrum of Water in the Hydration Layer of a Protein: a Molecular Dynamics Simulation Study Phys. Chem. Chem. Phys. 2012, 14, 899-913
    • (2012) Phys. Chem. Chem. Phys. , vol.14 , pp. 899-913
    • Sinha, S.K.1    Bandyopadhyay, S.2
  • 48
    • 77956209545 scopus 로고    scopus 로고
    • Combining THz Spectroscopy and MD Simulations to Study Protein-Hydration Coupling
    • Heyden, M.; Havenith, M. Combining THz Spectroscopy and MD Simulations to Study Protein-Hydration Coupling Methods 2010, 52, 74-83
    • (2010) Methods , vol.52 , pp. 74-83
    • Heyden, M.1    Havenith, M.2
  • 49
    • 81855164794 scopus 로고    scopus 로고
    • In Situ Molecular Dynamics Analysis of the Water Hydrogen Bond at Biomolecular Sites: Hydrophobicity Enhances Dynamics Heterogeneity
    • Russo, D.; Pellegrini, E.; Gonzalez, M. A.; Perticaroli, S.; Teixeira, J. In Situ Molecular Dynamics Analysis of the Water Hydrogen Bond at Biomolecular Sites: Hydrophobicity Enhances Dynamics Heterogeneity Chem. Phys. Lett. 2011, 517, 80-85
    • (2011) Chem. Phys. Lett. , vol.517 , pp. 80-85
    • Russo, D.1    Pellegrini, E.2    Gonzalez, M.A.3    Perticaroli, S.4    Teixeira, J.5


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