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Volumn 22, Issue 3, 2013, Pages 532-551

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar)

Author keywords

aquaculture; conservation; population genetics; salmonids; selection; single nucleotide polymorphism

Indexed keywords

ANIMAL; ATLANTIC SALMON; CONFERENCE PAPER; EUROPE; EXPRESSED SEQUENCE TAG; GENE FREQUENCY; GENETICS; GENOTYPE; GEOGRAPHY; NORTH AMERICA; POPULATION GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84872457205     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12003     Document Type: Conference Paper
Times cited : (185)

References (90)
  • 2
    • 77958134755 scopus 로고    scopus 로고
    • Ascertainment biases in SNP chips affect measures of population divergence
    • Albrechtsen A, Nielsen FC, Nielsen R, (2010) Ascertainment biases in SNP chips affect measures of population divergence. Molecular Biology and Evolution, 27, 2534-2547.
    • (2010) Molecular Biology and Evolution , vol.27 , pp. 2534-2547
    • Albrechtsen, A.1    Nielsen, F.C.2    Nielsen, R.3
  • 4
    • 0034727107 scopus 로고    scopus 로고
    • An SNP map of the human genome generated by reduced representation shotgun sequencing
    • Altshuler D, Pollara VJ, Cowles CR, et al,. (2000) An SNP map of the human genome generated by reduced representation shotgun sequencing. Nature, 407, 513-516.
    • (2000) Nature , vol.407 , pp. 513-516
    • Altshuler, D.1    Pollara, V.J.2    Cowles, C.R.3
  • 5
    • 33746290414 scopus 로고    scopus 로고
    • Loss of regional population structure in Atlantic salmon, Salmo salar L., following stocking
    • Ayllon F, Martinez JL, Garcia-Vazquez E, (2006) Loss of regional population structure in Atlantic salmon, Salmo salar L., following stocking. Ices Journal of Marine Science, 63, 1269-1273.
    • (2006) Ices Journal of Marine Science , vol.63 , pp. 1269-1273
    • Ayllon, F.1    Martinez, J.L.2    Garcia-Vazquez, E.3
  • 6
    • 84966150008 scopus 로고
    • Dynamics of hybrid zones
    • Barton NH, (1979) Dynamics of hybrid zones. Heredity, 43, 341-359.
    • (1979) Heredity , vol.43 , pp. 341-359
    • Barton, N.H.1
  • 10
    • 0022169437 scopus 로고
    • The formation of non-anadromous populations of Atlantic salmon, Salmo salar L., in Europe
    • Berg OK, (1985) The formation of non-anadromous populations of Atlantic salmon, Salmo salar L., in Europe. Journal of Fish Biology, 27, 805-815.
    • (1985) Journal of Fish Biology , vol.27 , pp. 805-815
    • Berg, O.K.1
  • 11
    • 79955577378 scopus 로고    scopus 로고
    • The coupling hypothesis: Why genome scans may fail to map local adaptation genes
    • Bierne N, Welch J, Loire E, Bonhomme F, David P, (2011) The coupling hypothesis: why genome scans may fail to map local adaptation genes. Molecular Ecology, 20, 2044-2072.
    • (2011) Molecular Ecology , vol.20 , pp. 2044-2072
    • Bierne, N.1    Welch, J.2    Loire, E.3    Bonhomme, F.4    David, P.5
  • 12
    • 79951956065 scopus 로고    scopus 로고
    • Temporal change in genetic integrity suggests loss of local adaptation in a wild Atlantic salmon (Salmo salar) population following introgression by farmed escapees
    • Bourret V, O'Reilly PT, Carr JW, Berg PR, Bernatchez L, (2011) Temporal change in genetic integrity suggests loss of local adaptation in a wild Atlantic salmon (Salmo salar) population following introgression by farmed escapees. Heredity, 106, 500-510.
    • (2011) Heredity , vol.106 , pp. 500-510
    • Bourret, V.1    O'Reilly, P.T.2    Carr, J.W.3    Berg, P.R.4    Bernatchez, L.5
  • 14
    • 11144248030 scopus 로고    scopus 로고
    • Efficacy of releasing captive reared broodstock into an imperilled wild Atlantic salmon population as a recovery strategy
    • Carr JW, Whoriskey F, O'Reilly P, (2004) Efficacy of releasing captive reared broodstock into an imperilled wild Atlantic salmon population as a recovery strategy. Journal of Fish Biology, 65, 38-54.
    • (2004) Journal of Fish Biology , vol.65 , pp. 38-54
    • Carr, J.W.1    Whoriskey, F.2    O'Reilly, P.3
  • 15
    • 49749141656 scopus 로고    scopus 로고
    • A genome scan to detect quantitative trait loci for economically important traits in Holstein cattle using two methods and a dense single nucleotide polymorphism map
    • Daetwyler HD, Schenkel FS, Sargolzaei M, Robinson JAB, (2008) A genome scan to detect quantitative trait loci for economically important traits in Holstein cattle using two methods and a dense single nucleotide polymorphism map. Journal of Dairy Science, 91, 3225-3236.
    • (2008) Journal of Dairy Science , vol.91 , pp. 3225-3236
    • Daetwyler, H.D.1    Schenkel, F.S.2    Sargolzaei, M.3    Robinson, J.A.B.4
  • 16
    • 77958150590 scopus 로고    scopus 로고
    • Sequencing the genome of the Atlantic salmon (Salmo salar)
    • Davidson WS, Koop BF, Jones SJM, et al,. (2010) Sequencing the genome of the Atlantic salmon (Salmo salar). Genome Biology, 11, 403-409.
    • (2010) Genome Biology , vol.11 , pp. 403-409
    • Davidson, W.S.1    Koop, B.F.2    Jones, S.J.M.3
  • 17
    • 0036250060 scopus 로고    scopus 로고
    • The use of molecular genetics in the improvement of agricultural populations
    • Dekkers JCM, Hospital F, (2002) The use of molecular genetics in the improvement of agricultural populations. Nature Reviews Genetics, 3, 22-32.
    • (2002) Nature Reviews Genetics , vol.3 , pp. 22-32
    • Dekkers, J.C.M.1    Hospital, F.2
  • 19
    • 34548344004 scopus 로고    scopus 로고
    • Clinal variation in MHC diversity with temperature: Evidence for the role of host-pathogen interaction on local adaptation in Atlantic salmon
    • Dionne M, Miller KM, Dodson JJ, Caron F, Bernatchez L, (2007) Clinal variation in MHC diversity with temperature: evidence for the role of host-pathogen interaction on local adaptation in Atlantic salmon. Evolution, 61, 2154-2164.
    • (2007) Evolution , vol.61 , pp. 2154-2164
    • Dionne, M.1    Miller, K.M.2    Dodson, J.J.3    Caron, F.4    Bernatchez, L.5
  • 20
    • 43049136589 scopus 로고    scopus 로고
    • Landscape genetics and hierarchical genetic structure in Atlantic salmon: The interaction of gene flow and local adaptation
    • Dionne M, Caron F, Dodson JJ, Bernatchez L, (2008) Landscape genetics and hierarchical genetic structure in Atlantic salmon: the interaction of gene flow and local adaptation. Molecular Ecology, 17, 2382-2396.
    • (2008) Molecular Ecology , vol.17 , pp. 2382-2396
    • Dionne, M.1    Caron, F.2    Dodson, J.J.3    Bernatchez, L.4
  • 21
    • 77957367388 scopus 로고    scopus 로고
    • Evaluation of an Atlantic salmon SNP chip as a genomic tool for the application in a Tasmanian Atlantic salmon (Salmo salar) breeding population
    • Dominik S, Henshall JM, Kube PD, et al,. (2010) Evaluation of an Atlantic salmon SNP chip as a genomic tool for the application in a Tasmanian Atlantic salmon (Salmo salar) breeding population. Aquaculture, 308, S56-S61.
    • (2010) Aquaculture , vol.308
    • Dominik, S.1    Henshall, J.M.2    Kube, P.D.3
  • 22
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier L, Lischer HEL, (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564-567.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 23
    • 70349506039 scopus 로고    scopus 로고
    • Detecting loci under selection in a hierarchically structured population
    • Excoffier L, Hofer T, Foll M, (2009) Detecting loci under selection in a hierarchically structured population. Heredity, 103, 285-298.
    • (2009) Heredity , vol.103 , pp. 285-298
    • Excoffier, L.1    Hofer, T.2    Foll, M.3
  • 25
    • 68949163889 scopus 로고    scopus 로고
    • The genome response to artificial selection: A case study in dairy cattle
    • Flori L, Fritz S, Jaffrezic F, et al,. (2009) The genome response to artificial selection: a case study in dairy cattle. PLoS ONE, 4, e6595.
    • (2009) PLoS ONE , vol.4
    • Flori, L.1    Fritz, S.2    Jaffrezic, F.3
  • 26
    • 58149347836 scopus 로고    scopus 로고
    • A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: A Bayesian perspective
    • Foll M, Gaggiotti O, (2008) A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics, 180, 977-993.
    • (2008) Genetics , vol.180 , pp. 977-993
    • Foll, M.1    Gaggiotti, O.2
  • 27
    • 40149105702 scopus 로고    scopus 로고
    • A global assessment of salmon aquaculture impacts on wild salmonids
    • Ford JS, Myers RA, (2008) A global assessment of salmon aquaculture impacts on wild salmonids. PLoS Biology, 6, 0411-0417.
    • (2008) PLoS Biology , vol.6 , pp. 0411-0417
    • Ford, J.S.1    Myers, R.A.2
  • 28
    • 79951946915 scopus 로고    scopus 로고
    • Extent and scale of local adaptation in salmonid fishes: Review and meta-analysis
    • Fraser DJ, Weir LK, Bernatchez L, Hansen MM, Taylor EB, (2011) Extent and scale of local adaptation in salmonid fishes: review and meta-analysis. Heredity, 106, 404-420.
    • (2011) Heredity , vol.106 , pp. 404-420
    • Fraser, D.J.1    Weir, L.K.2    Bernatchez, L.3    Hansen, M.M.4    Taylor, E.B.5
  • 29
    • 0037800457 scopus 로고    scopus 로고
    • Ocean thermal conditions in the post-smolt nursery of North American Atlantic salmon
    • Friedland KD, Reddin DG, Castonguay M, (2003) Ocean thermal conditions in the post-smolt nursery of North American Atlantic salmon. ICES Journal of Marine Science, 60, 343-355.
    • (2003) ICES Journal of Marine Science , vol.60 , pp. 343-355
    • Friedland, K.D.1    Reddin, D.G.2    Castonguay, M.3
  • 30
    • 70350222188 scopus 로고    scopus 로고
    • Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: Atlantic herring as a case study
    • Gaggiotti OE, Bekkevold D, Jorgensen HBH, et al,. (2009) Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: Atlantic herring as a case study. Evolution, 63, 2939-2951.
    • (2009) Evolution , vol.63 , pp. 2939-2951
    • Gaggiotti, O.E.1    Bekkevold, D.2    Jorgensen, H.B.H.3
  • 31
    • 84865156005 scopus 로고    scopus 로고
    • Comparative genomics reveals adaptive protein evolution and a possible cytonuclear incompatibility between European and American eels
    • Online early. doi: 10.1093/molbev/mss076
    • Gagnaire PA, Normandeau E, Bernatchez L, (2012a) Comparative genomics reveals adaptive protein evolution and a possible cytonuclear incompatibility between European and American eels. Molecular Biology and Evolution, Online early. doi: 10.1093/molbev/mss076
    • (2012) Molecular Biology and Evolution
    • Gagnaire, P.A.1    Normandeau, E.2    Bernatchez, L.3
  • 32
    • 84857419830 scopus 로고    scopus 로고
    • The effect of spatially varying selection on locally adaptive alleles in the panmictic American eel (Anguilla rostrata)
    • Gagnaire PA, Normandeau E, Côté C, Hansen MM, Bernatchez L, (2012b) The effect of spatially varying selection on locally adaptive alleles in the panmictic American eel (Anguilla rostrata). Genetics, 190, 725-736.
    • (2012) Genetics , vol.190 , pp. 725-736
    • Gagnaire, P.A.1    Normandeau, E.2    Côté, C.3    Hansen, M.M.4    Bernatchez, L.5
  • 34
    • 54849418431 scopus 로고    scopus 로고
    • Comparing clines on molecular and phenotypic traits in hybrid zones: A window on tension zone models
    • Gay L, Crochet PA, Bell DA, Lenormand T, (2008) Comparing clines on molecular and phenotypic traits in hybrid zones: a window on tension zone models. Evolution, 62, 2789-2806.
    • (2008) Evolution , vol.62 , pp. 2789-2806
    • Gay, L.1    Crochet, P.A.2    Bell, D.A.3    Lenormand, T.4
  • 35
    • 65449132092 scopus 로고    scopus 로고
    • Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds
    • Gibbs RA, Taylor JF, Van Tassell CP, et al,. (2009) Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science, 324, 528-532.
    • (2009) Science , vol.324 , pp. 528-532
    • Gibbs, R.A.1    Taylor, J.F.2    Van Tassell, C.P.3
  • 36
    • 79551599953 scopus 로고    scopus 로고
    • Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array
    • Gidskehaug L, Kent M, Hayes BJ, Lien S, (2011) Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array. Bioinformatics, 27, 303-310.
    • (2011) Bioinformatics , vol.27 , pp. 303-310
    • Gidskehaug, L.1    Kent, M.2    Hayes, B.J.3    Lien, S.4
  • 37
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon D, Abajian C, Green P, (1998) Consed: a graphical tool for sequence finishing. Genome Research, 8, 195-202.
    • (1998) Genome Research , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 38
    • 45549089420 scopus 로고    scopus 로고
    • High-throughput functional annotation and data mining with the Blast2GO suite
    • Gotz S, Garcia-Gomez JM, Terol J, et al,. (2008) High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Research, 36, 3420-3435.
    • (2008) Nucleic Acids Research , vol.36 , pp. 3420-3435
    • Gotz, S.1    Garcia-Gomez, J.M.2    Terol, J.3
  • 39
    • 77951577506 scopus 로고    scopus 로고
    • Genetic stock identification of Atlantic salmon (Salmo salar) populations in the southern part of the European range
    • Griffiths AM, Machado-Schiaffino G, Dillane E, et al,. (2010) Genetic stock identification of Atlantic salmon (Salmo salar) populations in the southern part of the European range. BMC Genetics, 11, 31.
    • (2010) BMC Genetics , vol.11 , pp. 31
    • Griffiths, A.M.1    MacHado-Schiaffino, G.2    Dillane, E.3
  • 41
    • 1842717960 scopus 로고    scopus 로고
    • The atlas genome assembly system
    • Havlak P, Chen R, Durbin KJ, et al,. (2004) The atlas genome assembly system. Genome Research, 14, 721-732.
    • (2004) Genome Research , vol.14 , pp. 721-732
    • Havlak, P.1    Chen, R.2    Durbin, K.J.3
  • 42
    • 34047264454 scopus 로고    scopus 로고
    • An extensive resource of single nucleotide polymorphism markers associated with Atlantic salmon (Salmo salar) expressed sequences
    • Hayes B, Laerdahl JK, Lien S, et al,. (2007) An extensive resource of single nucleotide polymorphism markers associated with Atlantic salmon (Salmo salar) expressed sequences. Aquaculture, 265, 82-90.
    • (2007) Aquaculture , vol.265 , pp. 82-90
    • Hayes, B.1    Laerdahl, J.K.2    Lien, S.3
  • 43
    • 0032965634 scopus 로고    scopus 로고
    • Highly variable loci and their interpretation in evolution and conservation
    • Hedrick PW, (1999) Highly variable loci and their interpretation in evolution and conservation. Evolution, 53, 313-318.
    • (1999) Evolution , vol.53 , pp. 313-318
    • Hedrick, P.W.1
  • 44
    • 0024258513 scopus 로고
    • Hybrid zones - Natural laboratories for evolutionary studies
    • Hewitt GM, (1988) Hybrid zones-natural laboratories for evolutionary studies. Trends in Ecology & Evolution, 3, 158-167.
    • (1988) Trends in Ecology & Evolution , vol.3 , pp. 158-167
    • Hewitt, G.M.1
  • 47
    • 79951748696 scopus 로고    scopus 로고
    • Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout
    • Hohenlohe PA, Amish SJ, Catchen JM, Allendorf FW, Luikart G, (2011) Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout. Molecular Ecology Resources, 11, 117-122.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 117-122
    • Hohenlohe, P.A.1    Amish, S.J.2    Catchen, J.M.3    Allendorf, F.W.4    Luikart, G.5
  • 48
    • 33745022862 scopus 로고    scopus 로고
    • Life on the margin: Genetic isolation and diversity loss in a peripheral marine ecosystem, the Baltic Sea
    • Johannesson K, Andre C, (2006) Life on the margin: genetic isolation and diversity loss in a peripheral marine ecosystem, the Baltic Sea. Molecular Ecology, 15, 2013-2029.
    • (2006) Molecular Ecology , vol.15 , pp. 2013-2029
    • Johannesson, K.1    Andre, C.2
  • 49
    • 77952876318 scopus 로고    scopus 로고
    • An extended panel of single nucleotide polymorphisms in Atlantic salmon (Salmo salar L.) mitochondrial DNA
    • Karlsson S, Moen T, Hindar K, (2010) An extended panel of single nucleotide polymorphisms in Atlantic salmon (Salmo salar L.) mitochondrial DNA. Conservation Genetics, 11, 1171-1175.
    • (2010) Conservation Genetics , vol.11 , pp. 1171-1175
    • Karlsson, S.1    Moen, T.2    Hindar, K.3
  • 50
    • 79751491721 scopus 로고    scopus 로고
    • Generic genetic differences between farmed and wild Atlantic salmon identified from a 7K SNP-chip
    • Karlsson S, Moen T, Lien S, Glover KA, Hindar K, (2011) Generic genetic differences between farmed and wild Atlantic salmon identified from a 7K SNP-chip. Molecular Ecology Resources, 11, 247-253.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 247-253
    • Karlsson, S.1    Moen, T.2    Lien, S.3    Glover, K.A.4    Hindar, K.5
  • 51
    • 0026273358 scopus 로고
    • Geographical patterns in the population-genetics of Atlantic salmon, Salmo-salar L, on USSR territory, as evidence for colonization routes
    • Kazakov RV, Titov SF, (1991) Geographical patterns in the population-genetics of Atlantic salmon, Salmo-salar L, on USSR territory, as evidence for colonization routes. Journal of Fish Biology, 39, 1-6.
    • (1991) Journal of Fish Biology , vol.39 , pp. 1-6
    • Kazakov, R.V.1    Titov, S.F.2
  • 52
    • 0035051254 scopus 로고    scopus 로고
    • Population structure of Atlantic salmon (Salmo salar L.): A range-wide perspective from microsatellite DNA variation
    • King TL, Kalinowski ST, Schill WB, Spidle AP, Lubinski BA, (2001) Population structure of Atlantic salmon (Salmo salar L.): a range-wide perspective from microsatellite DNA variation. Molecular Ecology, 10, 807-821.
    • (2001) Molecular Ecology , vol.10 , pp. 807-821
    • King, T.L.1    Kalinowski, S.T.2    Schill, W.B.3    Spidle, A.P.4    Lubinski, B.A.5
  • 53
    • 84889346748 scopus 로고    scopus 로고
    • Biodiversity and population structure
    • (eds Verspoor E. Stradmeyer L. Nielsen J.L.), Blackwell Publishing, Oxford.
    • King TL, Verspoor E, Spidle AP, et al,. (2007) Biodiversity and population structure. In: The Atlantic salmon-Genetics, Conservation and Management (eds, Verspoor E, Stradmeyer L, Nielsen JL,), pp. 117-166. Blackwell Publishing, Oxford.
    • (2007) The Atlantic Salmon - Genetics, Conservation and Management , pp. 117-166
    • King, T.L.1    Verspoor, E.2    Spidle, A.P.3
  • 54
    • 0001612327 scopus 로고    scopus 로고
    • Genotyping of archival Atlantic salmon scales from northern Québec & West Greenland using novel PCR primers for degraded DNA
    • Knox D, Lehman K, Reddin DG, Verspoor E, (2002) Genotyping of archival Atlantic salmon scales from northern Québec & West Greenland using novel PCR primers for degraded DNA. Journal of Fish Biology, 60, 266-270.
    • (2002) Journal of Fish Biology , vol.60 , pp. 266-270
    • Knox, D.1    Lehman, K.2    Reddin, D.G.3    Verspoor, E.4
  • 56
    • 0035705744 scopus 로고    scopus 로고
    • Conservation goals and fisheries management units for Atlantic salmon in the Baltic Sea area
    • Koljonen ML, (2001) Conservation goals and fisheries management units for Atlantic salmon in the Baltic Sea area. Journal of Fish Biology, 59, 269-288.
    • (2001) Journal of Fish Biology , vol.59 , pp. 269-288
    • Koljonen, M.L.1
  • 57
    • 84862019480 scopus 로고    scopus 로고
    • Dynamics of introgressive hybridization assessed by SNP population genomics of coding genes in stocked brook charr (Salvelinus fontinalis)
    • Lamaze FC, Sauvage C, Marie A, Garant D, Bernatchez L, (2012) Dynamics of introgressive hybridization assessed by SNP population genomics of coding genes in stocked brook charr (Salvelinus fontinalis). Molecular Ecology, 21, 2877-2895.
    • (2012) Molecular Ecology , vol.21 , pp. 2877-2895
    • Lamaze, F.C.1    Sauvage, C.2    Marie, A.3    Garant, D.4    Bernatchez, L.5
  • 58
    • 83655197149 scopus 로고    scopus 로고
    • A dense SNP-based linkage map of Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns
    • Lien S, Gidskehaug L, Moen T, et al,. (2011) A dense SNP-based linkage map of Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns. BMC Genomics, 12, 615.
    • (2011) BMC Genomics , vol.12 , pp. 615
    • Lien, S.1    Gidskehaug, L.2    Moen, T.3
  • 59
    • 65749118805 scopus 로고    scopus 로고
    • Genetic population structure of European sprat Sprattus sprattus: Differentiation across a steep environmental gradient in a small pelagic fish
    • Limborg MT, Pedersen JS, Hemmer-Hansen J, Tomkiewicz J, Bekkevold D, (2009) Genetic population structure of European sprat Sprattus sprattus: differentiation across a steep environmental gradient in a small pelagic fish. Marine Ecology Progress Series, 379, 213-224.
    • (2009) Marine Ecology Progress Series , vol.379 , pp. 213-224
    • Limborg, M.T.1    Pedersen, J.S.2    Hemmer-Hansen, J.3    Tomkiewicz, J.4    Bekkevold, D.5
  • 60
    • 18744382780 scopus 로고    scopus 로고
    • PowerMarker: An integrated analysis environment for genetic marker analysis
    • Liu KJ, Muse SV, (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics, 21, 2128-2129.
    • (2005) Bioinformatics , vol.21 , pp. 2128-2129
    • Liu, K.J.1    Muse, S.V.2
  • 61
    • 73849088359 scopus 로고    scopus 로고
    • BAC-based upgrading and physical integration of a genetic SNP map in Atlantic salmon
    • Lorenz S, Brenna-Hansen S, Moen T, et al,. (2010) BAC-based upgrading and physical integration of a genetic SNP map in Atlantic salmon. Animal Genetics, 41, 48-54.
    • (2010) Animal Genetics , vol.41 , pp. 48-54
    • Lorenz, S.1    Brenna-Hansen, S.2    Moen, T.3
  • 62
  • 63
    • 1642413951 scopus 로고    scopus 로고
    • Fitness reduction and potential extinction of wild populations of Atlantic salmon, Salmo salar, as a result of interactions with escaped farm salmon
    • McGinnity P, Prodöhl P, Ferguson A, et al,. (2003) Fitness reduction and potential extinction of wild populations of Atlantic salmon, Salmo salar, as a result of interactions with escaped farm salmon. Proceedings of the Royal Society of London Series B-Biological Sciences, 270, 2443-2450.
    • (2003) Proceedings of the Royal Society of London Series B-Biological Sciences , vol.270 , pp. 2443-2450
    • McGinnity, P.1    Prodöhl, P.2    Ferguson, A.3
  • 64
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • Meuwissen THE, Hayes BJ, Goddard ME, (2001) Prediction of total genetic value using genome-wide dense marker maps. Genetics, 157, 1819-1829.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 65
    • 0017666723 scopus 로고
    • F-Statistics and analysis of gene diversity in subdivided populations
    • Nei M, (1977) F-Statistics and analysis of gene diversity in subdivided populations. Annals of Human Genetics, 41, 225-233.
    • (1977) Annals of Human Genetics , vol.41 , pp. 225-233
    • Nei, M.1
  • 66
    • 77951193647 scopus 로고    scopus 로고
    • Population-specific gene expression responses to hybridization between farm and wild Atlantic salmon
    • Normandeau E, Hutchings JA, Fraser DJ, Bernatchez L, (2009) Population-specific gene expression responses to hybridization between farm and wild Atlantic salmon. Evolutionary Applications, 2, 489-503.
    • (2009) Evolutionary Applications , vol.2 , pp. 489-503
    • Normandeau, E.1    Hutchings, J.A.2    Fraser, D.J.3    Bernatchez, L.4
  • 67
    • 35448939707 scopus 로고    scopus 로고
    • Population structure and gene flow reversals in Atlantic salmon (Salmo salar) over contemporary and long-term temporal scales: Effects of population size and life history
    • Palstra FP, O'Connell MF, Ruzzante DE, (2007) Population structure and gene flow reversals in Atlantic salmon (Salmo salar) over contemporary and long-term temporal scales: effects of population size and life history. Molecular Ecology, 16, 4504-4522.
    • (2007) Molecular Ecology , vol.16 , pp. 4504-4522
    • Palstra, F.P.1    O'Connell, M.F.2    Ruzzante, D.E.3
  • 68
    • 66149113352 scopus 로고    scopus 로고
    • From conservation genetics to conservation genomics
    • (eds Ostfeld R.S. Schlesinger W.H.), Blackwell Publishing, Oxford.
    • Primmer CR, (2009) From conservation genetics to conservation genomics. In: Year in Ecology and Conservation Biology 2009 (eds, Ostfeld RS, Schlesinger WH,), pp. 357-368. Blackwell Publishing, Oxford.
    • (2009) Year in Ecology and Conservation Biology 2009 , pp. 357-368
    • Primmer, C.R.1
  • 69
    • 0005113694 scopus 로고
    • Induction of diploid gynogenesis in Atlantic salmon and rainbow trout using irradiated sperm and heat shock
    • Refstie T, (1983) Induction of diploid gynogenesis in Atlantic salmon and rainbow trout using irradiated sperm and heat shock. Canadian Journal of Zoology, 61, 2411-2416.
    • (1983) Canadian Journal of Zoology , vol.61 , pp. 2411-2416
    • Refstie, T.1
  • 70
    • 33645055108 scopus 로고    scopus 로고
    • Rapid parallel evolutionary changes of gene transcription profiles in farmed Atlantic salmon
    • Roberge C, Einum S, Guderley H, Bernatchez L, (2006) Rapid parallel evolutionary changes of gene transcription profiles in farmed Atlantic salmon. Molecular Ecology, 15, 9-20.
    • (2006) Molecular Ecology , vol.15 , pp. 9-20
    • Roberge, C.1    Einum, S.2    Guderley, H.3    Bernatchez, L.4
  • 71
    • 34548089267 scopus 로고    scopus 로고
    • The genetic architecture of ecological speciation and the association with signatures of selection in natural lake whitefish (Coregonus sp Salmonidae) species pairs
    • Rogers SM, Bernatchez L, (2007) The genetic architecture of ecological speciation and the association with signatures of selection in natural lake whitefish (Coregonus sp Salmonidae) species pairs. Molecular Biology and Evolution, 24, 1423-1438.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1423-1438
    • Rogers, S.M.1    Bernatchez, L.2
  • 72
    • 27744591506 scopus 로고    scopus 로고
    • Population genetic structure and postglacial colonization of Atlantic salmon (Salmo salar) in the Baltic Sea area based on microsatellite DNA variation
    • Säisä M, Koljonen ML, Gross R, et al,. (2005) Population genetic structure and postglacial colonization of Atlantic salmon (Salmo salar) in the Baltic Sea area based on microsatellite DNA variation. Canadian Journal of Fisheries and Aquatic Sciences, 62, 1887-1904.
    • (2005) Canadian Journal of Fisheries and Aquatic Sciences , vol.62 , pp. 1887-1904
    • Säisä, M.1    Koljonen, M.L.2    Gross, R.3
  • 74
    • 0032168115 scopus 로고    scopus 로고
    • Genetic comparison of salmon from the White Sea and north-western Atlantic Ocean
    • Skaala O, Makhrov AA, Karlsen T, et al,. (1998) Genetic comparison of salmon from the White Sea and north-western Atlantic Ocean. Journal of Fish Biology, 53, 569-580.
    • (1998) Journal of Fish Biology , vol.53 , pp. 569-580
    • Skaala, O.1    Makhrov, A.A.2    Karlsen, T.3
  • 75
    • 84995208596 scopus 로고
    • Genetic-mapping of the bovine genome using deoxyribonucleic acid-level markers to identify loci affecting quantitative traits of economic importance
    • Soller M, (1990) Genetic-mapping of the bovine genome using deoxyribonucleic acid-level markers to identify loci affecting quantitative traits of economic importance. Journal of Dairy Science, 73, 2628-2646.
    • (1990) Journal of Dairy Science , vol.73 , pp. 2628-2646
    • Soller, M.1
  • 76
    • 0002500219 scopus 로고
    • Genetic population structure of Atlantic salmon
    • (eds Ryman N. Utter F.), University of Washington Press, Seattle.
    • Ståhl G, (1987) Genetic population structure of Atlantic salmon. In: Population Genetics and Fisheries Management (eds, Ryman N, Utter F,), pp. 212-240. University of Washington Press, Seattle.
    • (1987) Population Genetics and Fisheries Management , pp. 212-240
    • Ståhl, G.1
  • 77
    • 77956407766 scopus 로고    scopus 로고
    • Integrating evolutionary and functional approaches to infer adaptation at specific loci
    • Storz JF, Wheat CW, (2010) Integrating evolutionary and functional approaches to infer adaptation at specific loci. Evolution, 64, 2489-2509.
    • (2010) Evolution , vol.64 , pp. 2489-2509
    • Storz, J.F.1    Wheat, C.W.2
  • 79
    • 0034109109 scopus 로고    scopus 로고
    • A mtDNA and microsatellite assessment of single vs multiple origins of landlocked Atlantic salmon (Salmo salar L.) from Lake Saint-Jean, Québec, Canada
    • Tessier N, Bernatchez L, (2000) A mtDNA and microsatellite assessment of single vs multiple origins of landlocked Atlantic salmon (Salmo salar L.) from Lake Saint-Jean, Québec, Canada. Canadian Journal of Fisheries and Aquatic Sciences, 57, 797-804.
    • (2000) Canadian Journal of Fisheries and Aquatic Sciences , vol.57 , pp. 797-804
    • Tessier, N.1    Bernatchez, L.2
  • 81
    • 20044363777 scopus 로고    scopus 로고
    • Phylogeography of anadromous and non-anadromous Atlantic salmon (Salmo salar) from northern Europe
    • Tonteri A, Titov S, Veselov A, et al,. (2005) Phylogeography of anadromous and non-anadromous Atlantic salmon (Salmo salar) from northern Europe. Annales Zoologici Fennici, 42, 1-22.
    • (2005) Annales Zoologici Fennici , vol.42 , pp. 1-22
    • Tonteri, A.1    Titov, S.2    Veselov, A.3
  • 82
    • 34447092451 scopus 로고    scopus 로고
    • The effect of migratory behaviour on genetic diversity and population divergence: A comparison of anadromous and freshwater Atlantic salmon Salmo salar
    • Tonteri A, Veselov AJ, Titov S, Lumme J, Primmer CR, (2007) The effect of migratory behaviour on genetic diversity and population divergence: a comparison of anadromous and freshwater Atlantic salmon Salmo salar. Journal of Fish Biology, 70, 381-398.
    • (2007) Journal of Fish Biology , vol.70 , pp. 381-398
    • Tonteri, A.1    Veselov, A.J.2    Titov, S.3    Lumme, J.4    Primmer, C.R.5
  • 83
    • 67649274459 scopus 로고    scopus 로고
    • Microsatellites reveal clear genetic boundaries among Atlantic salmon (Salmo salar) populations from the Barents and White seas, northwest Russia
    • Tonteri A, Veselov AJ, Zubchenko AV, Lumme J, Primmer CR, (2009) Microsatellites reveal clear genetic boundaries among Atlantic salmon (Salmo salar) populations from the Barents and White seas, northwest Russia. Canadian Journal of Fisheries and Aquatic Sciences, 66, 717-735.
    • (2009) Canadian Journal of Fisheries and Aquatic Sciences , vol.66 , pp. 717-735
    • Tonteri, A.1    Veselov, A.J.2    Zubchenko, A.V.3    Lumme, J.4    Primmer, C.R.5
  • 84
    • 33644692857 scopus 로고    scopus 로고
    • Challenges for identifying functionally important genetic variation: The promise of combining complementary research strategies
    • Vasemägi A, Primmer CR, (2005) Challenges for identifying functionally important genetic variation: the promise of combining complementary research strategies. Molecular Ecology, 14, 3623-3642.
    • (2005) Molecular Ecology , vol.14 , pp. 3623-3642
    • Vasemägi, A.1    Primmer, C.R.2
  • 85
    • 27844453348 scopus 로고    scopus 로고
    • Population structure in the Atlantic salmon: Insights from 40 years of research into genetic protein variation
    • Verspoor E, Beardmore JA, Consuegra S, et al,. (2005) Population structure in the Atlantic salmon: insights from 40 years of research into genetic protein variation. Journal of Fish Biology, 67, 3-54.
    • (2005) Journal of Fish Biology , vol.67 , pp. 3-54
    • Verspoor, E.1    Beardmore, J.A.2    Consuegra, S.3
  • 87
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population-structure
    • Weir BS, Cockerham CC, (1984) Estimating F-statistics for the analysis of population-structure. Evolution, 38, 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 89
    • 77953642090 scopus 로고    scopus 로고
    • Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies
    • Willing EM, Bentzen P, van Oosterhout C, et al,. (2010) Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies. Molecular Ecology, 19, 968-984.
    • (2010) Molecular Ecology , vol.19 , pp. 968-984
    • Willing, E.M.1    Bentzen, P.2    Van Oosterhout, C.3
  • 90
    • 77954140531 scopus 로고    scopus 로고
    • Common SNPs explain a large proportion of the heritability for human height
    • Yang JA, Benyamin B, McEvoy BP, et al,. (2010) Common SNPs explain a large proportion of the heritability for human height. Nature Genetics, 42, 565-571.
    • (2010) Nature Genetics , vol.42 , pp. 565-571
    • Yang, J.A.1    Benyamin, B.2    McEvoy, B.P.3


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