-
1
-
-
0033954256
-
The protein data bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., Bourne P.E. The protein data bank. Nucleic Acids Res 2000, 28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
2
-
-
79953900818
-
Overcoming barriers to membrane protein structure determination
-
Bill R.M., Henderson P.J., Iwata S., Kunji E.R., Michel H., Neutze R., Newstead S., Poolman B., Tate C.G., Vogel H. Overcoming barriers to membrane protein structure determination. Nat Biotechnol 2011, 29:335-340.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 335-340
-
-
Bill, R.M.1
Henderson, P.J.2
Iwata, S.3
Kunji, E.R.4
Michel, H.5
Neutze, R.6
Newstead, S.7
Poolman, B.8
Tate, C.G.9
Vogel, H.10
-
3
-
-
38549128793
-
Protein crystallography with a micrometre-sized synchrotron-radiation beam
-
Moukhametzianov R., Burghammer M., Edwards P.C., Petitdemange S., Popov D., Fransen M., McMullan G., Schertler G.F., Riekel C. Protein crystallography with a micrometre-sized synchrotron-radiation beam. Acta Crystallogr D Biol Crystallogr 2008, 64:158-166.
-
(2008)
Acta Crystallogr D Biol Crystallogr
, vol.64
, pp. 158-166
-
-
Moukhametzianov, R.1
Burghammer, M.2
Edwards, P.C.3
Petitdemange, S.4
Popov, D.5
Fransen, M.6
McMullan, G.7
Schertler, G.F.8
Riekel, C.9
-
4
-
-
0030864048
-
X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases
-
Pebay-Peyroula E., Rummel G., Rosenbusch J.P., Landau E.M. X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases. Science 1997, 277:1676-1681.
-
(1997)
Science
, vol.277
, pp. 1676-1681
-
-
Pebay-Peyroula, E.1
Rummel, G.2
Rosenbusch, J.P.3
Landau, E.M.4
-
5
-
-
77955455725
-
Diffraction cartography: applying microbeams to macromolecular crystallography sample evaluation data collection
-
Bowler M.W., Guijarro M., Petitdemange S., Baker I., Svensson O., Burghammer M., Mueller-Dieckmann C., Gordon E.J., Flot D., McSweeney S.M., et al. Diffraction cartography: applying microbeams to macromolecular crystallography sample evaluation data collection. Acta Crystallogr D Biol Crystallogr 2010, 66:855-864.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 855-864
-
-
Bowler, M.W.1
Guijarro, M.2
Petitdemange, S.3
Baker, I.4
Svensson, O.5
Burghammer, M.6
Mueller-Dieckmann, C.7
Gordon, E.J.8
Flot, D.9
McSweeney, S.M.10
-
6
-
-
36248970132
-
Crystal structure of the human beta2 adrenergic G-protein-coupled receptor
-
Rasmussen S.G., Choi H.J., Rosenbaum D.M., Kobilka T.S., Thian F.S., Edwards P.C., Burghammer M., Ratnala V.R., Sanishvili R., Fischetti R.F., et al. Crystal structure of the human beta2 adrenergic G-protein-coupled receptor. Nature 2007, 450:383-387.
-
(2007)
Nature
, vol.450
, pp. 383-387
-
-
Rasmussen, S.G.1
Choi, H.J.2
Rosenbaum, D.M.3
Kobilka, T.S.4
Thian, F.S.5
Edwards, P.C.6
Burghammer, M.7
Ratnala, V.R.8
Sanishvili, R.9
Fischetti, R.F.10
-
7
-
-
36448995359
-
High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor
-
Cherezov V., Rosenbaum D.M., Hanson M.A., Rasmussen S.G., Thian F.S., Kobilka T.S., Choi H.J., Kuhn P., Weis W.I., Kobilka B.K., et al. High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor. Science 2007, 318:1258-1265.
-
(2007)
Science
, vol.318
, pp. 1258-1265
-
-
Cherezov, V.1
Rosenbaum, D.M.2
Hanson, M.A.3
Rasmussen, S.G.4
Thian, F.S.5
Kobilka, T.S.6
Choi, H.J.7
Kuhn, P.8
Weis, W.I.9
Kobilka, B.K.10
-
8
-
-
84888087327
-
Three-dimensional electron crystallography of protein microcrystals
-
Shi D., Nannenga B.L., Iadanza M.G., Gonen T. Three-dimensional electron crystallography of protein microcrystals. Elife 2013, 2.
-
(2013)
Elife
, pp. 2
-
-
Shi, D.1
Nannenga, B.L.2
Iadanza, M.G.3
Gonen, T.4
-
9
-
-
61449176982
-
Radiation damage in protein crystals examined under various conditions by different methods
-
Garman E.F., Nave C. Radiation damage in protein crystals examined under various conditions by different methods. J Synchrotron Radiat 2009, 16:129-132.
-
(2009)
J Synchrotron Radiat
, vol.16
, pp. 129-132
-
-
Garman, E.F.1
Nave, C.2
-
10
-
-
0028948565
-
Radiation-damage in protein crystallography
-
Nave C. Radiation-damage in protein crystallography. Radiat Phys Chem 1995, 45:483-490.
-
(1995)
Radiat Phys Chem
, vol.45
, pp. 483-490
-
-
Nave, C.1
-
11
-
-
33748353816
-
Quantifying X-ray radiation damage in protein crystals at cryogenic temperatures
-
Kmetko J., Husseini N.S., Naides M., Kalinin Y., Thorne R.E. Quantifying X-ray radiation damage in protein crystals at cryogenic temperatures. Acta Crystallogr D Biol Crystallogr 2006, 62:1030-1038.
-
(2006)
Acta Crystallogr D Biol Crystallogr
, vol.62
, pp. 1030-1038
-
-
Kmetko, J.1
Husseini, N.S.2
Naides, M.3
Kalinin, Y.4
Thorne, R.E.5
-
12
-
-
75749092651
-
Origin and temperature dependence of radiation damage in biological samples at cryogenic temperatures
-
Meents A., Gutmann S., Wagner A., Schulze-Briese C. Origin and temperature dependence of radiation damage in biological samples at cryogenic temperatures. Proc Natl Acad Sci U S A 2010, 107:1094-1099.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 1094-1099
-
-
Meents, A.1
Gutmann, S.2
Wagner, A.3
Schulze-Briese, C.4
-
13
-
-
0031879388
-
Small is beautiful: protein micro-crystallography
-
Cusack S., Belrhali H., Bram A., Burghammer M., Perrakis A., Riekel C. Small is beautiful: protein micro-crystallography. Nat Struct Biol 1998, 5:634-637.
-
(1998)
Nat Struct Biol
, vol.5
, pp. 634-637
-
-
Cusack, S.1
Belrhali, H.2
Bram, A.3
Burghammer, M.4
Perrakis, A.5
Riekel, C.6
-
14
-
-
79551658540
-
Femtosecond X-ray protein nanocrystallography
-
The first proof of principle of structure determination from femtosecond X-ray crystallography where a hard-X-ray free-electron laser (XFEL) was used solve the 8.5 structure of photosystem I.
-
Chapman H.N., Fromme P., Barty A., White T.A., Kirian R.A., Aquila A., Hunter M.S., Schulz J., DePonte D.P., Weierstall U., et al. Femtosecond X-ray protein nanocrystallography. Nature 2011, 470:73-77. The first proof of principle of structure determination from femtosecond X-ray crystallography where a hard-X-ray free-electron laser (XFEL) was used solve the 8.5 structure of photosystem I.
-
(2011)
Nature
, vol.470
, pp. 73-77
-
-
Chapman, H.N.1
Fromme, P.2
Barty, A.3
White, T.A.4
Kirian, R.A.5
Aquila, A.6
Hunter, M.S.7
Schulz, J.8
DePonte, D.P.9
Weierstall, U.10
-
15
-
-
84864004802
-
High-resolution protein structure determination by serial femtosecond crystallography
-
Boutet S., Lomb L., Williams G.J., Barends T.R., Aquila A., Doak R.B., Weierstall U., DePonte D.P., Steinbrener J., Shoeman R.L., et al. High-resolution protein structure determination by serial femtosecond crystallography. Science 2012, 337:362-364.
-
(2012)
Science
, vol.337
, pp. 362-364
-
-
Boutet, S.1
Lomb, L.2
Williams, G.J.3
Barends, T.R.4
Aquila, A.5
Doak, R.B.6
Weierstall, U.7
DePonte, D.P.8
Steinbrener, J.9
Shoeman, R.L.10
-
16
-
-
80052103348
-
Femtosecond nanocrystallography using X-ray lasers for membrane protein structure determination
-
Fromme P., Spence J.C. Femtosecond nanocrystallography using X-ray lasers for membrane protein structure determination. Curr Opin Struct Biol 2011, 21:509-516.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 509-516
-
-
Fromme, P.1
Spence, J.C.2
-
17
-
-
33845186032
-
Femtosecond diffractive imaging with a soft-X-ray free-electron laser
-
Chapman H.N., Barty A., Bogan M.J., Boutet S., Frank M., Hau-Riege S.P., Marchesini S., Woods B.W., Bajt S., Benner H., et al. Femtosecond diffractive imaging with a soft-X-ray free-electron laser. Nat Phys 2006, 2:839-843.
-
(2006)
Nat Phys
, vol.2
, pp. 839-843
-
-
Chapman, H.N.1
Barty, A.2
Bogan, M.J.3
Boutet, S.4
Frank, M.5
Hau-Riege, S.P.6
Marchesini, S.7
Woods, B.W.8
Bajt, S.9
Benner, H.10
-
18
-
-
84892364805
-
De novo protein crystal structure determination from X-ray free-electron laser data
-
Barends T.R., Foucar L., Botha S., Doak R.B., Shoeman R.L., Nass K., Koglin J.E., Williams G.J., Boutet S., Messerschmidt M., et al. De novo protein crystal structure determination from X-ray free-electron laser data. Nature 2013, 10. 10.1038/nature12773.
-
(2013)
Nature
, pp. 10
-
-
Barends, T.R.1
Foucar, L.2
Botha, S.3
Doak, R.B.4
Shoeman, R.L.5
Nass, K.6
Koglin, J.E.7
Williams, G.J.8
Boutet, S.9
Messerschmidt, M.10
-
19
-
-
84872148917
-
Natively inhibited Trypanosoma brucei cathepsin B structure determined by using an X-ray laser
-
Redecke L., Nass K., DePonte D.P., White T.A., Rehders D., Barty A., Stellato F., Liang M., Barends T.R., Boutet S., et al. Natively inhibited Trypanosoma brucei cathepsin B structure determined by using an X-ray laser. Science 2013, 339:227-230.
-
(2013)
Science
, vol.339
, pp. 227-230
-
-
Redecke, L.1
Nass, K.2
DePonte, D.P.3
White, T.A.4
Rehders, D.5
Barty, A.6
Stellato, F.7
Liang, M.8
Barends, T.R.9
Boutet, S.10
-
20
-
-
0029003107
-
The potential and limitations of neutrons electrons and X-rays for atomic-resolution microscopy of unstained biological molecules
-
Henderson R. The potential and limitations of neutrons electrons and X-rays for atomic-resolution microscopy of unstained biological molecules. Q Rev Biophys 1995, 28:171-193.
-
(1995)
Q Rev Biophys
, vol.28
, pp. 171-193
-
-
Henderson, R.1
-
21
-
-
0016842810
-
Three-dimensional model of purple membrane obtained by electron microscopy
-
Henderson R., Unwin P.N. Three-dimensional model of purple membrane obtained by electron microscopy. Nature 1975, 257:28-32.
-
(1975)
Nature
, vol.257
, pp. 28-32
-
-
Henderson, R.1
Unwin, P.N.2
-
22
-
-
0016688080
-
Molecular structure determination by electron microscopy of unstained crystalline specimens
-
Unwin P.N., Henderson R. Molecular structure determination by electron microscopy of unstained crystalline specimens. J Mol Biol 1975, 94:425-440.
-
(1975)
J Mol Biol
, vol.94
, pp. 425-440
-
-
Unwin, P.N.1
Henderson, R.2
-
23
-
-
80054063377
-
Advances in structural and functional analysis of membrane proteins by electron crystallography
-
Wisedchaisri G., Reichow S.L., Gonen T. Advances in structural and functional analysis of membrane proteins by electron crystallography. Structure 2011, 19:1381-1393.
-
(2011)
Structure
, vol.19
, pp. 1381-1393
-
-
Wisedchaisri, G.1
Reichow, S.L.2
Gonen, T.3
-
24
-
-
28444450878
-
Lipid-protein interactions in double-layered two-dimensional AQP0 crystals
-
Gonen T., Cheng Y., Sliz P., Hiroaki Y., Fujiyoshi Y., Harrison S.C., Walz T. Lipid-protein interactions in double-layered two-dimensional AQP0 crystals. Nature 2005, 438:633-638.
-
(2005)
Nature
, vol.438
, pp. 633-638
-
-
Gonen, T.1
Cheng, Y.2
Sliz, P.3
Hiroaki, Y.4
Fujiyoshi, Y.5
Harrison, S.C.6
Walz, T.7
-
25
-
-
0032545098
-
2+-ATPase from sarcoplasmic reticulum: merging electron diffraction tilt series and imaging the (h, k, 0) projection
-
2+-ATPase from sarcoplasmic reticulum: merging electron diffraction tilt series and imaging the (h, k, 0) projection. J Mol Biol 1998, 284:1547-1564.
-
(1998)
J Mol Biol
, vol.284
, pp. 1547-1564
-
-
Shi, D.1
Lewis, M.R.2
Young, H.S.3
Stokes, D.L.4
-
26
-
-
82055172640
-
Image processing and lattice determination for three-dimensional nanocrystals
-
Jiang L.H., Georgieva D., Nederlof I., Liu Z.F., Abrahams J.P. Image processing and lattice determination for three-dimensional nanocrystals. Microsc Microanal 2011, 17:879-885.
-
(2011)
Microsc Microanal
, vol.17
, pp. 879-885
-
-
Jiang, L.H.1
Georgieva, D.2
Nederlof, I.3
Liu, Z.F.4
Abrahams, J.P.5
-
27
-
-
84879330227
-
A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals
-
Nederlof I., van Genderen E., Li Y.W., Abrahams J.P. A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals. Acta Crystallogr D Biol Crystallogr 2013, 69:1223-1230.
-
(2013)
Acta Crystallogr D Biol Crystallogr
, vol.69
, pp. 1223-1230
-
-
Nederlof, I.1
van Genderen, E.2
Li, Y.W.3
Abrahams, J.P.4
-
28
-
-
68149180561
-
Unit-cell determination from randomly oriented electron-diffraction patterns
-
Jiang L.H., Georgieva D., Zandbergen H.W., Abrahams J.P. Unit-cell determination from randomly oriented electron-diffraction patterns. Acta Crystallogr D Biol Crystallogr 2009, 65:625-632.
-
(2009)
Acta Crystallogr D Biol Crystallogr
, vol.65
, pp. 625-632
-
-
Jiang, L.H.1
Georgieva, D.2
Zandbergen, H.W.3
Abrahams, J.P.4
-
29
-
-
84879775726
-
Overview of electron crystallography of membrane proteins: crystallization and screening strategies using negative stain electron microscopy
-
(Chapter 17: Unit17 15)
-
Nannenga B.L., Iadanza M.G., Vollmar B.S., Gonen T. Overview of electron crystallography of membrane proteins: crystallization and screening strategies using negative stain electron microscopy. Curr Protoc Protein Sci 2013, (Chapter 17: Unit17 15).
-
(2013)
Curr Protoc Protein Sci
-
-
Nannenga, B.L.1
Iadanza, M.G.2
Vollmar, B.S.3
Gonen, T.4
-
30
-
-
84876033753
-
The collection of high-resolution electron diffraction data
-
Gonen T. The collection of high-resolution electron diffraction data. Methods Mol Biol 2013, 955:153-169.
-
(2013)
Methods Mol Biol
, vol.955
, pp. 153-169
-
-
Gonen, T.1
-
31
-
-
84901849376
-
A suite of software for processing microcrystal electron diffraction (MicroED) data
-
(submitted for publication)
-
Iadanza M.G., Gonen T. A suite of software for processing microcrystal electron diffraction (MicroED) data. Journal of Applied Crystallography 2014, (submitted for publication).
-
(2014)
Journal of Applied Crystallography
-
-
Iadanza, M.G.1
Gonen, T.2
-
32
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams P.D., Afonine P.V., Bunkoczi G., Chen V.B., Davis I.W., Echols N., Headd J.J., Hung L.W., Kapral G.J., Grosse-Kunstleve R.W., et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 2010, 66:213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
-
33
-
-
3543012707
-
Crystallography & NMR system: a new software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 1998, 54:905-921.
-
(1998)
Acta Crystallogr D Biol Crystallogr
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
34
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn M.D., Ballard C.C., Cowtan K.D., Dodson E.J., Emsley P., Evans P.R., Keegan R.M., Krissinel E.B., Leslie A.G.W., McCoy A., et al. Overview of the CCP4 suite and current developments. Acta Crystallogr D Biol Crystallogr 2011, 67:235-242.
-
(2011)
Acta Crystallogr D Biol Crystallogr
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
Keegan, R.M.7
Krissinel, E.B.8
Leslie, A.G.W.9
McCoy, A.10
-
35
-
-
0029360316
-
Diffuse scattering in electron diffraction data from protein crystals
-
Grigorieff N., Henderson R. Diffuse scattering in electron diffraction data from protein crystals. Ultramicroscopy 1995, 60:295-309.
-
(1995)
Ultramicroscopy
, vol.60
, pp. 295-309
-
-
Grigorieff, N.1
Henderson, R.2
-
36
-
-
0029903197
-
Electron-crystallographic refinement of the structure of bacteriorhodopsin
-
Grigorieff N., Ceska T.A., Downing K.H., Baldwin J.M., Henderson R. Electron-crystallographic refinement of the structure of bacteriorhodopsin. J Mol Biol 1996, 259:393-421.
-
(1996)
J Mol Biol
, vol.259
, pp. 393-421
-
-
Grigorieff, N.1
Ceska, T.A.2
Downing, K.H.3
Baldwin, J.M.4
Henderson, R.5
-
37
-
-
0000520380
-
High-voltage electron-diffraction from bacteriorhodopsin (purple membrane) is measurably dynamical
-
Glaeser R.M., Ceska T.A. High-voltage electron-diffraction from bacteriorhodopsin (purple membrane) is measurably dynamical. Acta Crystallogr A 1989, 45:620-628.
-
(1989)
Acta Crystallogr A
, vol.45
, pp. 620-628
-
-
Glaeser, R.M.1
Ceska, T.A.2
-
38
-
-
33847168921
-
Structure solution with three-dimensional sets of processed electron diffraction intensities
-
Gemmi M., Nicolopoulos S. Structure solution with three-dimensional sets of processed electron diffraction intensities. Ultramicroscopy 2007, 107:483-494.
-
(2007)
Ultramicroscopy
, vol.107
, pp. 483-494
-
-
Gemmi, M.1
Nicolopoulos, S.2
-
39
-
-
84866340512
-
Structure characterization of hard materials by precession electron diffraction and automatic diffraction tomography: 6H-SiC semiconductor and Ni1+xTe1 embedded nanodomains
-
Sarakinou E., Mugnaioli E., Lioutas C.B., Vouroutzis N., Frangis N., Kolb U., Nikolopoulos S. Structure characterization of hard materials by precession electron diffraction and automatic diffraction tomography: 6H-SiC semiconductor and Ni1+xTe1 embedded nanodomains. Semicond Sci Technol 2012, 27.
-
(2012)
Semicond Sci Technol
, pp. 27
-
-
Sarakinou, E.1
Mugnaioli, E.2
Lioutas, C.B.3
Vouroutzis, N.4
Frangis, N.5
Kolb, U.6
Nikolopoulos, S.7
-
40
-
-
0011235329
-
Structure model for the phase AlmFe derived from three-dimensional electron diffraction intensity data collected by a precession technique. Comparison with convergent-beam diffraction
-
Gjonnes J., Hansen V., Berg B.S., Runde P., Cheng Y.F., Gjonnes K., Dorset D.L., Gilmore C.J. Structure model for the phase AlmFe derived from three-dimensional electron diffraction intensity data collected by a precession technique. Comparison with convergent-beam diffraction. Acta Crystallogr A 1998, 54:306-319.
-
(1998)
Acta Crystallogr A
, vol.54
, pp. 306-319
-
-
Gjonnes, J.1
Hansen, V.2
Berg, B.S.3
Runde, P.4
Cheng, Y.F.5
Gjonnes, K.6
Dorset, D.L.7
Gilmore, C.J.8
|