Three-dimensional crystals of Ca2+-ATPase from sarcoplasmic reticulum: Merging electron diffraction tilt series and imaging the (h, k, 0) projection

Journal of Molecular Biology

Volumn 284, Issue 5, 1998, Pages 1547-1564

  Shi, Dan ^a   Lewis, Michael R ^a   Young, Howard S ^a   Stokes, David L ^a  

^a NEW YORK UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Ca2+ ATPase; Crystallography; Electron microscopy; Ion transport; Sarcoplasmic reticulum

Indexed keywords

ADENOSINE TRIPHOSPHATASE (CALCIUM); CALCIUM;

ANIMAL TISSUE; ARTICLE; CALCULATION; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; ELECTRON DIFFRACTION; ENZYME BINDING; GEOMETRY; IMAGING; METHODOLOGY; NONHUMAN; PRIORITY JOURNAL; SARCOPLASMIC RETICULUM; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTALLOGRAPHY; ELECTRON; ELECTRON MICROSCOPY; ENZYMOLOGY; IMAGE PROCESSING; PROTEIN CONFORMATION; X RAY DIFFRACTION;

ANIMALIA;

CALCIUM-TRANSPORTING ATPASES; CRYSTALLOGRAPHY; ELECTRONS; IMAGE PROCESSING, COMPUTER-ASSISTED; MICROSCOPY, ELECTRON; MODELS, MOLECULAR; PROTEIN CONFORMATION; SARCOPLASMIC RETICULUM; X-RAY DIFFRACTION;

EID: 0032545098     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.2283     Document Type: Article

References (40)

1. Akey, C. W., Szalay, M. & Edelstein, S. J. (1984). Trigonal catalase crystals: a new molecular packing assignment obtained from sections preserved in tank acid. Ultramicroscopy, 13, 103-112.
2. Amos, L. A., Henderson, R. & Unwin, P. N. T. (1982). Three-dimensional stucture determination by electron microscopy of two-dimensional crystals. Prog. Biophys. Mol. Biol. 39, 183-231.
3. Angert, I., Burmester, C., Dinges, C., Rose, H. & Schroeder, R. R. (1996). Elastic and inelastic scattering cross-sections of amorphous layers of carbon and vitrified ice. Ultramicroscopy, 63, 181-192.
4. Baldwin, J. & Henderson, R. (1984). Measurement and evaluation of electron diffraction patterns from two-dimensional crystals. Ultramicroscopy, 14, 319-336.
5. 2+-ATPase from sarcoplasmic reticulum. Biophys. J. 70, 1689-1699.
6. Downing, K. (1991). Spot-scan imaging in transmission electron microscopy. Science, 251, 53-59.
7. Downing, K. H. (1984). Electron crystallographic studies of DNA. Ultramicroscopy, 13, 35-46.
8. Eletr, S. & Inesi, G. (1972). Phospholipid orientation in sarcoplasmic reticulum membranes: spin-label ESR and proton NMR studies. Biochim. Biophys. Acta, 282, 174-179.
9. Grant, R. A., Schmid, M. F. & Chiu, W. (1991). Analysis of symmetry and three-dimensional reconstruction of thin gp32*I crystals. J. Mol. Biol. 217, 551-562.
10. Grimm, R., Typke, D., Barmann, M. & Baumeister, W. (1996). Determination of the inelastic mean free path in ice by examination of tilted vesicles and automated most probable loss imaging. Ultramicroscopy, 63, 169-179.
11. Henderson, R., Baldwin, J. M., Downing, K. H., Lepault, J. & Zemlin, F. (1986). Structure of purple membrane from Halobacterium halobium: recording, measurement and evaluation of electron microgaphs at 3.5 Å resolution. Ultramicroscopy, 19, 147-178.
12. Henderson, R., Baldwin, J. M., Ceska, T. A., Zemlin, F., Beckmann, E. & Downing, K. H. (1990). Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J. Mol. Biol. 213, 899-929.
13. Jeng, T. W. & Chiu, W. (1983). Low dose electron microscopy of the crotoxin complex thin crystal. J. Mol. Biol. 164, 329-346.
14. Jesior, J.-C. (1982). The grid-sectioning technique: a study of catalase platelets. EMBO J. 1, 1423-1428.
15. Kimura, Y., Vassylyev, D. G., Miyazawa, A., Kidera, A., Matsushima, M., Mitsuoka, K., Murata, K., Hirai, T. & Fujiyoshi, Y. (1997). Surface of bacteriorhodopsin revealed by high-resolution electron crystallography. Nature, 389, 206-211.
16. Kühlbrandt, W. (1988). The structure of light-harvesting chlorophyll a/b protein complex from plant photosynthetic membranes at 7 Å resolution in projection. J. Mol. Biol. 202, 849-864.
17. Kühlbrandt, W., Wang, D. N. & Fujiyoshi, Y. (1994). Atomic model of plant light-harvesting complex by electron crystallography. Nature, 367, 614-621.
18. Leapman, R. D., Brink, J. & Chiu, W. (1993). Low-dose thickness measurement of glucose-embedded protein crystals by electron energy loss spectroscopy and STEM dark-field imaging. Ultramicroscopy, 52, 157-166.
19. 2+ ATPases. J. Biol. Chem. 272, 28815-28818.
20. Michel, H. (1983). Crystallization of membrane proteins. Trends Biochem. Sci. 8, 56-59.
21. 2+-ATPase or muscle sarcoplasmic reticulum. Biochim. Biophys. Acta, 1077, 107-118.
22. Mosser, G., Breyton, C., Olofsson, A., Popot, J.-L. & Rigaud, J.-L. (1997). Projection map of cytochrome b6f complex at 8 Å resolution. J. Biol. Chem. 272, 20263-20268.
23. Nogales, E., Wolf, S. G. & Downing, K. H. (1998). Structure of the alpha beta tubulin dimer by electron crystallography. Nature, 391, 199-203.
24. 2+ pump of sarcoplasmic reticulum: a view along the lipid bilayer at 9-Å resolution. Biophys. J. 75, 41-52.
25. Otwinowski, Z. & Minor, W. (1997). Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326.
26. Rez, P., Chiu, W., Weiss, J. K. & Brink, J. (1992). The thickness determination of organic crystals under low dose conditioins using energy loos spectroscopy. Micros. Res. Tech. 21, 166-170.
27. Shaw, P. J. & Hills, G. J. (1981). Tilted specimen in the electron microscope: a simple specimen holder and the calculation of tilt angles for crystalline specimens. Micron, 12, 279-282.
28. 2+-ATPase for electron crystallography. Biophys. J. 68, 1152-1162.
29. Stokes, D. L. & Green, N. M. (1990a). Structure of Ca-ATPase: electron microscopy of frozen-hydrated crystals at 6 A resolution in projection. J. Mol. Biol. 213, 529-538.
30. Stokes, D. L. & Green, N. M. (1990b). Three-dimensional crystals of Ca-ATPase from sarcoplasmic reticulum: symmetry and molecular packing. Biophys. J. 57, 1-14.
31. 2+, thapsigargin, AMP-PCP, and Cr-ATP on crystallization. J. Biol. Chem. 269, 11606-11613.
32. Taylor, K. A. & Crowther, R. A. (1992). 3D reconstruction from the Fourier transform of a single superlattice image of an oblique section. Ultramicroscopy, 41, 153-167.
33. 2+-ATPase from skeletal muscle sarcoplasmic reticulum. J. Biol. Chem. 269, 10107-10111.
34. Taylor, K. A., Reedy, M. C., Cordova, L. & Reedy, M. K. (1984). Three-dimensional reconstruction of rigor insect flight muscle from tilted thin sections. Nature, 310, 285.
35. 2+-ATPase microcrystals in detergent-solubilized sarcoplasmic reticulum. J. Biol. Chem. 263, 5287-5294.
36. Toyoshima, C., Sasabe, H. & Stokes, D. L. (1993). Three-dimensional cryo-electron microscopy of the calcium ion pump in the sarcoplasmic reticulum membrane. Nature, 362, 469-471.
37. Unwin, P. N. T. (1975). Beef liver catalase structure: interpretation of electron micrographs. J. Mol. Biol. 98, 235-242.
38. Valpuesta, J. M., Carrascosa, J. L. & Henderson, R. (1994). Analysis of electron microscope images and electron diffraction patterns of thin crystals of Φ29 connector in ice. J. Mol. Biol. 240, 281-287.
39. Winkelmann, D. A. (1991). Three-dimensional structure of myosin subfragment-1 from electron microscopy of sectioned crystals. J. Cell. Biol. 114, 701-713.
40. Zhang, P., Toyoshima, C., Yonekura, K., Green, N. M. & Stokes, D. L. (1998). Structure of the calcium pump from sarcoplasmic reticulum at 8 Å resolution. Nature, 392, 835-839.