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Volumn 13, Issue 1, 2014, Pages

A reduced genome decreases the host carrying capacity for foreign DNA

Author keywords

Escherichia coli; Exogenous DNAs; Expression; Growth rate; Plasmid carrying capacity; Reduced genome; Replication

Indexed keywords

FOREIGN DNA; PLASMID DNA; UNCLASSIFIED DRUG;

EID: 84897385204     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/1475-2859-13-49     Document Type: Article
Times cited : (13)

References (30)
  • 2
    • 0023236704 scopus 로고
    • Replication and maintenance of promiscuous plasmids of gram-negative bacteria
    • Pinkney M, Thomas CM. Replication and maintenance of promiscuous plasmids of gram-negative bacteria. Microbiol Sci 1987, 4(6):186-191.
    • (1987) Microbiol Sci , vol.4 , Issue.6 , pp. 186-191
    • Pinkney, M.1    Thomas, C.M.2
  • 3
    • 0024644419 scopus 로고
    • Host-plasmid interactions in Saccharomyces cerevisiae: effect of host ploidy on plasmid stability and copy number
    • Spalding A, Tuite MF. Host-plasmid interactions in Saccharomyces cerevisiae: effect of host ploidy on plasmid stability and copy number. J Gen Microbiol 1989, 135(4):1037-1045.
    • (1989) J Gen Microbiol , vol.135 , Issue.4 , pp. 1037-1045
    • Spalding, A.1    Tuite, M.F.2
  • 4
    • 2342653439 scopus 로고    scopus 로고
    • Plasmid copy number and plasmid stability
    • Friehs K. Plasmid copy number and plasmid stability. Adv Biochem Eng Biotechnol 2004, 86:47-82.
    • (2004) Adv Biochem Eng Biotechnol , vol.86 , pp. 47-82
    • Friehs, K.1
  • 5
    • 67949083649 scopus 로고    scopus 로고
    • Competition favours reduced cost of plasmids to host bacteria
    • Haft RJ, Mittler JE, Traxler B. Competition favours reduced cost of plasmids to host bacteria. ISME J 2009, 3(7):761-769.
    • (2009) ISME J , vol.3 , Issue.7 , pp. 761-769
    • Haft, R.J.1    Mittler, J.E.2    Traxler, B.3
  • 6
    • 79551502228 scopus 로고    scopus 로고
    • Physiological and biochemical consequences of host-plasmid interaction-a case study with Corynebacterium renale, a multiple cryptic plasmid containing strain
    • Srivastava P, Singh P, Narayanan N, Deb JK. Physiological and biochemical consequences of host-plasmid interaction-a case study with Corynebacterium renale, a multiple cryptic plasmid containing strain. Plasmid 2011, 65(2):110-117.
    • (2011) Plasmid , vol.65 , Issue.2 , pp. 110-117
    • Srivastava, P.1    Singh, P.2    Narayanan, N.3    Deb, J.K.4
  • 7
    • 84868154443 scopus 로고    scopus 로고
    • The cost of copy number in a selfish genetic element: the 2-μm plasmid of Saccharomyces cerevisiae
    • Harrison E, Koufopanou V, Burt A, MacLean RC. The cost of copy number in a selfish genetic element: the 2-μm plasmid of Saccharomyces cerevisiae. J Evol Biol 2012, 25(11):2348-2356.
    • (2012) J Evol Biol , vol.25 , Issue.11 , pp. 2348-2356
    • Harrison, E.1    Koufopanou, V.2    Burt, A.3    MacLean, R.C.4
  • 8
    • 84859000608 scopus 로고    scopus 로고
    • Fitness of the pMV158 replicon in Streptococcus pneumoniae
    • Hernandez-Arriaga AM, Espinosa M, del Solar G. Fitness of the pMV158 replicon in Streptococcus pneumoniae. Plasmid 2012, 67(2):162-166.
    • (2012) Plasmid , vol.67 , Issue.2 , pp. 162-166
    • Hernandez-Arriaga, A.M.1    Espinosa, M.2    del Solar, G.3
  • 9
    • 0022407889 scopus 로고
    • Effects of recombinant plasmid content on growth properties and cloned gene product formation in Escherichia coli
    • Seo JH, Bailey JE. Effects of recombinant plasmid content on growth properties and cloned gene product formation in Escherichia coli. Biotechnol Bioeng 1985, 27(12):1668-1674.
    • (1985) Biotechnol Bioeng , vol.27 , Issue.12 , pp. 1668-1674
    • Seo, J.H.1    Bailey, J.E.2
  • 10
    • 84857499822 scopus 로고    scopus 로고
    • Evaluating metabolic stress and plasmid stability in plasmid DNA production by Escherichia coli
    • Silva F, Queiroz JA, Domingues FC. Evaluating metabolic stress and plasmid stability in plasmid DNA production by Escherichia coli. Biotechnol Adv 2012, 30(3):691-708.
    • (2012) Biotechnol Adv , vol.30 , Issue.3 , pp. 691-708
    • Silva, F.1    Queiroz, J.A.2    Domingues, F.C.3
  • 11
    • 84988044805 scopus 로고    scopus 로고
    • The energetics of genome complexity
    • Lane N, Martin W. The energetics of genome complexity. Nature 2010, 467(7318):929-934.
    • (2010) Nature , vol.467 , Issue.7318 , pp. 929-934
    • Lane, N.1    Martin, W.2
  • 13
    • 84857114878 scopus 로고    scopus 로고
    • Low-mutation-rate, reduced-genome Escherichia coli: an improved host for faithful maintenance of engineered genetic constructs
    • Csorgo B, Feher T, Timar E, Blattner FR, Posfai G. Low-mutation-rate, reduced-genome Escherichia coli: an improved host for faithful maintenance of engineered genetic constructs. Microbial Cell Factories 2012, 11:11.
    • (2012) Microbial Cell Factories , vol.11 , pp. 11
    • Csorgo, B.1    Feher, T.2    Timar, E.3    Blattner, F.R.4    Posfai, G.5
  • 14
    • 35649012025 scopus 로고    scopus 로고
    • Improved recombinational stability of lentiviral expression vectors using reduced-genome Escherichia coli
    • Chakiath CS, Esposito D. Improved recombinational stability of lentiviral expression vectors using reduced-genome Escherichia coli. Escherichia Coli Biotechniques 2007, 43(4):466-470.
    • (2007) Escherichia Coli Biotechniques , vol.43 , Issue.4 , pp. 466-470
    • Chakiath, C.S.1    Esposito, D.2
  • 15
    • 36749085952 scopus 로고    scopus 로고
    • Expression of two recombinant chloramphenicol acetyltransferase variants in highly reduced genome Escherichia coli strains
    • Sharma SS, Campbell JW, Frisch D, Blattner FR, Harcum SW. Expression of two recombinant chloramphenicol acetyltransferase variants in highly reduced genome Escherichia coli strains. Biotechnol Bioeng 2007, 98(5):1056-1070.
    • (2007) Biotechnol Bioeng , vol.98 , Issue.5 , pp. 1056-1070
    • Sharma, S.S.1    Campbell, J.W.2    Frisch, D.3    Blattner, F.R.4    Harcum, S.W.5
  • 17
    • 77952456525 scopus 로고    scopus 로고
    • Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications
    • Umenhoffer K, Feher T, Baliko G, Ayaydin F, Posfai J, Blattner FR, Posfai G. Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications. Microbial Cell Factories 2010, 9:38.
    • (2010) Microbial Cell Factories , vol.9 , pp. 38
    • Umenhoffer, K.1    Feher, T.2    Baliko, G.3    Ayaydin, F.4    Posfai, J.5    Blattner, F.R.6    Posfai, G.7
  • 18
    • 84872203266 scopus 로고    scopus 로고
    • Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome
    • Ying BW, Seno S, Kaneko F, Matsuda H, Yomo T. Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome. BMC Genom 2013, 14:25.
    • (2013) BMC Genom , vol.14 , pp. 25
    • Ying, B.W.1    Seno, S.2    Kaneko, F.3    Matsuda, H.4    Yomo, T.5
  • 20
    • 62949222607 scopus 로고    scopus 로고
    • Engineering of bacterial strains and vectors for the production of plasmid DNA
    • Bower DM, Prather KL. Engineering of bacterial strains and vectors for the production of plasmid DNA. Appl Microbiol Biotechnol 2009, 82(5):805-813.
    • (2009) Appl Microbiol Biotechnol , vol.82 , Issue.5 , pp. 805-813
    • Bower, D.M.1    Prather, K.L.2
  • 21
    • 84856575274 scopus 로고    scopus 로고
    • Rational engineering of Escherichia coli strains for plasmid biopharmaceutical manufacturing
    • Goncalves GA, Bower DM, Prazeres DM, Monteiro GA, Prather KL. Rational engineering of Escherichia coli strains for plasmid biopharmaceutical manufacturing. Biotechnol J 2012, 7(2):251-261.
    • (2012) Biotechnol J , vol.7 , Issue.2 , pp. 251-261
    • Goncalves, G.A.1    Bower, D.M.2    Prazeres, D.M.3    Monteiro, G.A.4    Prather, K.L.5
  • 22
    • 0026446168 scopus 로고
    • High copy number of the pUC plasmid results from a Rom/Rop-suppressible point mutation in RNA II
    • Lin-Chao S, Chen WT, Wong TT. High copy number of the pUC plasmid results from a Rom/Rop-suppressible point mutation in RNA II. Mol Microbiol 1992, 6(22):3385-3393.
    • (1992) Mol Microbiol , vol.6 , Issue.22 , pp. 3385-3393
    • Lin-Chao, S.1    Chen, W.T.2    Wong, T.T.3
  • 23
    • 0022350973 scopus 로고
    • A kinetic model for product formation in unstable recombinant populations
    • Lee SB, Seressiotis A, Bailey JE. A kinetic model for product formation in unstable recombinant populations. Biotechnol Bioeng 1985, 27(12):1699-1709.
    • (1985) Biotechnol Bioeng , vol.27 , Issue.12 , pp. 1699-1709
    • Lee, S.B.1    Seressiotis, A.2    Bailey, J.E.3
  • 24
    • 0027608425 scopus 로고
    • Investigation of subpopulation heterogeneity and plasmid stability in recombinant Escherichia coli via a simple segregated model
    • Bentley WE, Quiroga OE. Investigation of subpopulation heterogeneity and plasmid stability in recombinant Escherichia coli via a simple segregated model. Biotechnol Bioeng 1993, 42(2):222-234.
    • (1993) Biotechnol Bioeng , vol.42 , Issue.2 , pp. 222-234
    • Bentley, W.E.1    Quiroga, O.E.2
  • 25
    • 84888024181 scopus 로고    scopus 로고
    • Growth rate-coordinated transcriptome reorganization in bacteria
    • Matsumoto Y, Murakami Y, Tsuru S, Ying BW, Yomo T. Growth rate-coordinated transcriptome reorganization in bacteria. BMC Genom 2013, 14(1):808.
    • (2013) BMC Genom , vol.14 , Issue.1 , pp. 808
    • Matsumoto, Y.1    Murakami, Y.2    Tsuru, S.3    Ying, B.W.4    Yomo, T.5
  • 26
    • 84893491805 scopus 로고    scopus 로고
    • Gene expression scaled by distance to the genome replication site
    • Ying BW, Tsuru S, Seno S, Matsuda H, Yomo T. Gene expression scaled by distance to the genome replication site. Mol Biosyst 2014, 10(3):375-379.
    • (2014) Mol Biosyst , vol.10 , Issue.3 , pp. 375-379
    • Ying, B.W.1    Tsuru, S.2    Seno, S.3    Matsuda, H.4    Yomo, T.5
  • 27
    • 77957325036 scopus 로고    scopus 로고
    • Refined method for the genomic integration of complex synthetic circuits
    • Ying BW, Ito Y, Shimizu Y, Yomo T. Refined method for the genomic integration of complex synthetic circuits. J Biosci Bioeng 2010, 110(5):529-536.
    • (2010) J Biosci Bioeng , vol.110 , Issue.5 , pp. 529-536
    • Ying, B.W.1    Ito, Y.2    Shimizu, Y.3    Yomo, T.4
  • 28
    • 80052729003 scopus 로고    scopus 로고
    • Stochastic switching induced adaptation in a starved Escherichia coli population
    • Shimizu Y, Tsuru S, Ito Y, Ying BW, Yomo T. Stochastic switching induced adaptation in a starved Escherichia coli population. PloS One 2011, 6(9):e23953.
    • (2011) PloS One , vol.6 , Issue.9
    • Shimizu, Y.1    Tsuru, S.2    Ito, Y.3    Ying, B.W.4    Yomo, T.5
  • 29
    • 79251553136 scopus 로고    scopus 로고
    • Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa
    • MacLean RC, Perron GG, Gardner A. Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa. Genetics 2010, 186(4):1345-1354.
    • (2010) Genetics , vol.186 , Issue.4 , pp. 1345-1354
    • MacLean, R.C.1    Perron, G.G.2    Gardner, A.3
  • 30
    • 33746745365 scopus 로고    scopus 로고
    • Absolute and relative QPCR quantification of plasmid copy number in Escherichia coli
    • Lee C, Kim J, Shin SG, Hwang S. Absolute and relative QPCR quantification of plasmid copy number in Escherichia coli. J Biotechnol 2006, 123(3):273-280.
    • (2006) J Biotechnol , vol.123 , Issue.3 , pp. 273-280
    • Lee, C.1    Kim, J.2    Shin, S.G.3    Hwang, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.