-
1
-
-
38749148516
-
Synthetic bilology for synthetic chemistry
-
10.1021/cb7002434, 18205292
-
Keasling JD. Synthetic bilology for synthetic chemistry. Acs Chemical Biology 2008, 3:64-76. 10.1021/cb7002434, 18205292.
-
(2008)
Acs Chemical Biology
, vol.3
, pp. 64-76
-
-
Keasling, J.D.1
-
2
-
-
28544451327
-
Foundations for engineering biology
-
10.1038/nature04342, 16306983
-
Endy D. Foundations for engineering biology. Nature 2005, 438:449-453. 10.1038/nature04342, 16306983.
-
(2005)
Nature
, vol.438
, pp. 449-453
-
-
Endy, D.1
-
3
-
-
0025858529
-
Mechanisms of spontaneous mutation in DNA repair-proficient Escherichia coli
-
Halliday JA, Glickman BW. Mechanisms of spontaneous mutation in DNA repair-proficient Escherichia coli. Mutat Res 1991, 250:55-71.
-
(1991)
Mutat Res
, vol.250
, pp. 55-71
-
-
Halliday, J.A.1
Glickman, B.W.2
-
4
-
-
0031984407
-
Activation of the bgl operon by adaptive mutation
-
Hall BG. Activation of the bgl operon by adaptive mutation. Mol Biol Evol 1998, 15:1-5.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1-5
-
-
Hall, B.G.1
-
6
-
-
0019772965
-
Insetion of DNA Activates the Cryptic bgl Operon in E. coli K-12
-
10.1038/293625a0, 6270569
-
Reynolds AE, Felton J, Wright A. Insetion of DNA Activates the Cryptic bgl Operon in E. coli K-12. Nature 1981, 293:625-629. 10.1038/293625a0, 6270569.
-
(1981)
Nature
, vol.293
, pp. 625-629
-
-
Reynolds, A.E.1
Felton, J.2
Wright, A.3
-
7
-
-
0033061057
-
Spectra of spontaneous growth-dependent and adaptive mutations at ebgR
-
93491, 9973340
-
Hall BG. Spectra of spontaneous growth-dependent and adaptive mutations at ebgR. Journal of Bacteriology 1999, 181:1149-1155. 93491, 9973340.
-
(1999)
Journal of Bacteriology
, vol.181
, pp. 1149-1155
-
-
Hall, B.G.1
-
8
-
-
0028903665
-
DNA sequence changes in mutations in the tonB gene on the chromosome of Escherichia coli K12: insertion elements dominate the spontaneous spectra
-
10.1266/jjg.70.35, 7772380
-
Kitamura K, Torii Y, Matsuoka C, Yamamoto K. DNA sequence changes in mutations in the tonB gene on the chromosome of Escherichia coli K12: insertion elements dominate the spontaneous spectra. Jpn J Genet 1995, 70:35-46. 10.1266/jjg.70.35, 7772380.
-
(1995)
Jpn J Genet
, vol.70
, pp. 35-46
-
-
Kitamura, K.1
Torii, Y.2
Matsuoka, C.3
Yamamoto, K.4
-
9
-
-
33244456358
-
Characterization of cycA mutants of Escherichia coli. An assay for measuring in vivo mutation rates
-
Fehér T, Cseh B, Umenhoffer K, Karcagi I, Posfai G. Characterization of cycA mutants of Escherichia coli. An assay for measuring in vivo mutation rates. Mutat Res 2006, 595:184-190.
-
(2006)
Mutat Res
, vol.595
, pp. 184-190
-
-
Fehér, T.1
Cseh, B.2
Umenhoffer, K.3
Karcagi, I.4
Posfai, G.5
-
10
-
-
73449104573
-
Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS
-
10.1371/journal.pgen.1000671, 2744996, 19798444
-
Stoebel DM, Hokamp K, Last MS, Dorman CJ. Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS. PLoS Genet 2009, 5:e1000671. 10.1371/journal.pgen.1000671, 2744996, 19798444.
-
(2009)
PLoS Genet
, vol.5
-
-
Stoebel, D.M.1
Hokamp, K.2
Last, M.S.3
Dorman, C.J.4
-
11
-
-
0024563360
-
Streptokinase mutations relieving Escherichia coli K-12 (prlA4) of detriments caused by the wild-type skc gene
-
209878, 2649490
-
Muller J, Reinert H, Malke H. Streptokinase mutations relieving Escherichia coli K-12 (prlA4) of detriments caused by the wild-type skc gene. J Bacteriol 1989, 171:2202-2208. 209878, 2649490.
-
(1989)
J Bacteriol
, vol.171
, pp. 2202-2208
-
-
Muller, J.1
Reinert, H.2
Malke, H.3
-
12
-
-
69249171632
-
Inactivation of a transgene due to transposition of insertion sequence (IS136) of Agrobacterium tumefaciens
-
10.1007/s12038-009-0023-5, 19550035
-
Rawat P, Kumar S, Pental D, Burma PK. Inactivation of a transgene due to transposition of insertion sequence (IS136) of Agrobacterium tumefaciens. J Biosci 2009, 34:199-202. 10.1007/s12038-009-0023-5, 19550035.
-
(2009)
J Biosci
, vol.34
, pp. 199-202
-
-
Rawat, P.1
Kumar, S.2
Pental, D.3
Burma, P.K.4
-
13
-
-
0022376069
-
Cloning of a Restriction-Modification System from Proteus vulgaris and its Use in Analyzing a Methylase-Sensitive Phenotype in Escherichia coli
-
214280, 2997113
-
Blumenthal RM, Gregory SA, Cooperider JS. Cloning of a Restriction-Modification System from Proteus vulgaris and its Use in Analyzing a Methylase-Sensitive Phenotype in Escherichia coli. Journal of Bacteriology 1985, 164:501-509. 214280, 2997113.
-
(1985)
Journal of Bacteriology
, vol.164
, pp. 501-509
-
-
Blumenthal, R.M.1
Gregory, S.A.2
Cooperider, J.S.3
-
14
-
-
0022612269
-
Spontaneous Insertions Into Cosmid Vector - A Warning
-
10.1016/0378-1119(86)90299-4, 3015734
-
Fernandez C, Larhammar D, Servenius B, Rask L, Peterson PA. Spontaneous Insertions Into Cosmid Vector - A Warning. Gene 1986, 42:215-219. 10.1016/0378-1119(86)90299-4, 3015734.
-
(1986)
Gene
, vol.42
, pp. 215-219
-
-
Fernandez, C.1
Larhammar, D.2
Servenius, B.3
Rask, L.4
Peterson, P.A.5
-
15
-
-
0019470502
-
Inactivation of the Serratia marcescens gene for the lipoprotein in Escherichia coli by insertion sequences, IS1 and IS5; sequence analysis of junction points
-
10.1007/BF00270147, 6276671
-
Nakamura K, Inouye M. Inactivation of the Serratia marcescens gene for the lipoprotein in Escherichia coli by insertion sequences, IS1 and IS5; sequence analysis of junction points. Mol Gen Genet 1981, 183:107-114. 10.1007/BF00270147, 6276671.
-
(1981)
Mol Gen Genet
, vol.183
, pp. 107-114
-
-
Nakamura, K.1
Inouye, M.2
-
16
-
-
0019258873
-
Instability in tyrR strains of plasmids carrying the tyrosine operon: isolation and characterization of plasmid derivatives with insertions or deletions
-
294702, 6253437
-
Rood JI, Sneddon MK, Morrison JF. Instability in tyrR strains of plasmids carrying the tyrosine operon: isolation and characterization of plasmid derivatives with insertions or deletions. J Bacteriol 1980, 144:552-559. 294702, 6253437.
-
(1980)
J Bacteriol
, vol.144
, pp. 552-559
-
-
Rood, J.I.1
Sneddon, M.K.2
Morrison, J.F.3
-
17
-
-
33751510492
-
Identification and characterization of IS1 transposition in plasmid amplification mutants of E. coli clones producing DNA vaccines
-
10.1007/s00253-006-0532-1, 16941177
-
Prather KL, Edmonds MC, Herod JW. Identification and characterization of IS1 transposition in plasmid amplification mutants of E. coli clones producing DNA vaccines. Appl Microbiol Biotechnol 2006, 73:815-826. 10.1007/s00253-006-0532-1, 16941177.
-
(2006)
Appl Microbiol Biotechnol
, vol.73
, pp. 815-826
-
-
Prather, K.L.1
Edmonds, M.C.2
Herod, J.W.3
-
18
-
-
0347297279
-
Evidence for a prokaryotic insertion-sequence contamination in eukaryotic sequences registered in different databases
-
10.1007/s001220200005, 12579427
-
Astua-Monge G, Lyznik A, Jones V, Mackenzie SA, Vallejos CE. Evidence for a prokaryotic insertion-sequence contamination in eukaryotic sequences registered in different databases. Theor Appl Genet 2002, 104:48-53. 10.1007/s001220200005, 12579427.
-
(2002)
Theor Appl Genet
, vol.104
, pp. 48-53
-
-
Astua-Monge, G.1
Lyznik, A.2
Jones, V.3
Mackenzie, S.A.4
Vallejos, C.E.5
-
19
-
-
0027286178
-
Contamination of DNA database sequence entries with Escherichia coli insertion sequences
-
10.1093/nar/21.3.779, 309200, 8382807
-
Binns M. Contamination of DNA database sequence entries with Escherichia coli insertion sequences. Nucleic Acids Research 1993, 21:779. 10.1093/nar/21.3.779, 309200, 8382807.
-
(1993)
Nucleic Acids Research
, vol.21
, pp. 779
-
-
Binns, M.1
-
20
-
-
0034740780
-
Transposition of IS10 from the host Escherichia coli genome to a plasmid may lead to cloning artefacts
-
10.1007/s004380100542, 11683262
-
Kovarik A, Matzke MA, Matzke AJ, Koulakova B. Transposition of IS10 from the host Escherichia coli genome to a plasmid may lead to cloning artefacts. Mol Genet Genomics 2001, 266:216-222. 10.1007/s004380100542, 11683262.
-
(2001)
Mol Genet Genomics
, vol.266
, pp. 216-222
-
-
Kovarik, A.1
Matzke, M.A.2
Matzke, A.J.3
Koulakova, B.4
-
21
-
-
0034231375
-
An estimate of large-scale sequencing accuracy
-
10.1093/embo-reports/kvd015, 1083690, 11256620
-
Hill F, Gemund C, Benes V, Ansorge W, Gibson TJ. An estimate of large-scale sequencing accuracy. Embo Reports 2000, 1:29-31. 10.1093/embo-reports/kvd015, 1083690, 11256620.
-
(2000)
Embo Reports
, vol.1
, pp. 29-31
-
-
Hill, F.1
Gemund, C.2
Benes, V.3
Ansorge, W.4
Gibson, T.J.5
-
22
-
-
0023122287
-
Distribution and abundance of insertion sequences among natural isolates of Escherichia coli
-
1203063, 3030884
-
Sawyer SA, Dykhuizen DE, DuBose RF, Green L, Mutangadura-Mhlanga T, Wolczyk DF, Hartl DL. Distribution and abundance of insertion sequences among natural isolates of Escherichia coli. Genetics 1987, 115:51-63. 1203063, 3030884.
-
(1987)
Genetics
, vol.115
, pp. 51-63
-
-
Sawyer, S.A.1
Dykhuizen, D.E.2
DuBose, R.F.3
Green, L.4
Mutangadura-Mhlanga, T.5
Wolczyk, D.F.6
Hartl, D.L.7
-
23
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
10.1126/science.277.5331.1453, 9278503
-
Blattner FR, Plunkett G, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, et al. The complete genome sequence of Escherichia coli K-12. Science 1997, 277:1453. 10.1126/science.277.5331.1453, 9278503.
-
(1997)
Science
, vol.277
, pp. 1453
-
-
Blattner, F.R.1
Plunkett, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
-
24
-
-
33646722147
-
Emergent properties of reduced-genome Escherichia coli
-
10.1126/science.1126439, 16645050
-
Pósfai G, Plunkett G, Fehér T, Frisch D, Keil GM, Umenhoffer K, Kolisnychenko V, Stahl B, Sharma SS, de Arruda M, et al. Emergent properties of reduced-genome Escherichia coli. Science 2006, 312:1044-1046. 10.1126/science.1126439, 16645050.
-
(2006)
Science
, vol.312
, pp. 1044-1046
-
-
Pósfai, G.1
Plunkett, G.2
Fehér, T.3
Frisch, D.4
Keil, G.M.5
Umenhoffer, K.6
Kolisnychenko, V.7
Stahl, B.8
Sharma, S.S.9
de Arruda, M.10
-
25
-
-
0025948169
-
Rabbit hemorrhagic disease virus--molecular cloning and nucleotide sequencing of a calicivirus genome
-
10.1016/0042-6822(91)90436-F, 1840711
-
Meyers G, Wirblich C, Thiel HJ. Rabbit hemorrhagic disease virus--molecular cloning and nucleotide sequencing of a calicivirus genome. Virology 1991, 184:664-676. 10.1016/0042-6822(91)90436-F, 1840711.
-
(1991)
Virology
, vol.184
, pp. 664-676
-
-
Meyers, G.1
Wirblich, C.2
Thiel, H.J.3
-
26
-
-
0036228521
-
Engineering a reduced Escherichia coli genome
-
10.1101/gr.217202, 187512, 11932248
-
Kolisnychenko V, Plunkett G, Herring CD, Feher T, Posfai J, Blattner FR, Posfai G. Engineering a reduced Escherichia coli genome. Genome Res 2002, 12:640-647. 10.1101/gr.217202, 187512, 11932248.
-
(2002)
Genome Res
, vol.12
, pp. 640-647
-
-
Kolisnychenko, V.1
Plunkett, G.2
Herring, C.D.3
Feher, T.4
Posfai, J.5
Blattner, F.R.6
Posfai, G.7
-
27
-
-
0030574265
-
A broad-host-range in vivo pop-out and amplification system for generating large quantities of 50- to 100-kb genomic fragments for direct DNA sequencing
-
10.1016/S0378-1119(96)00487-8, 8955645
-
Wild J, Hradecna Z, Posfai G, Szybalski W. A broad-host-range in vivo pop-out and amplification system for generating large quantities of 50- to 100-kb genomic fragments for direct DNA sequencing. Gene 1996, 179:181-188. 10.1016/S0378-1119(96)00487-8, 8955645.
-
(1996)
Gene
, vol.179
, pp. 181-188
-
-
Wild, J.1
Hradecna, Z.2
Posfai, G.3
Szybalski, W.4
-
29
-
-
0036763207
-
On filtering false positive transmembrane protein predictions
-
10.1093/protein/15.9.745, 12456873
-
Cserzo{double acute} M, Eisenhaber F, Eisenhaber B, Simon I. On filtering false positive transmembrane protein predictions. Protein Eng 2002, 15:745-752. 10.1093/protein/15.9.745, 12456873.
-
(2002)
Protein Eng
, vol.15
, pp. 745-752
-
-
Cserzo, M.1
Eisenhaber, F.2
Eisenhaber, B.3
Simon, I.4
-
30
-
-
0032561132
-
Principles governing amino acid composition of integral membrane proteins: application to topology prediction
-
10.1006/jmbi.1998.2107, 9769220
-
Tusnády GE, Simon I. Principles governing amino acid composition of integral membrane proteins: application to topology prediction. J Mol Biol 1998, 283:489-506. 10.1006/jmbi.1998.2107, 9769220.
-
(1998)
J Mol Biol
, vol.283
, pp. 489-506
-
-
Tusnády, G.E.1
Simon, I.2
-
31
-
-
0034786532
-
The HMMTOP transmembrane topology prediction server
-
10.1093/bioinformatics/17.9.849, 11590105
-
Tusnády GE, Simon I. The HMMTOP transmembrane topology prediction server. Bioinformatics 2001, 17:849-850. 10.1093/bioinformatics/17.9.849, 11590105.
-
(2001)
Bioinformatics
, vol.17
, pp. 849-850
-
-
Tusnády, G.E.1
Simon, I.2
-
32
-
-
58549118539
-
Using shotgun sequence data to find active restriction enzyme genes
-
10.1093/nar/gkn883, 2615612, 18988632
-
Zheng Y, Posfai J, Morgan RD, Vincze T, Roberts RJ. Using shotgun sequence data to find active restriction enzyme genes. Nucleic Acids Res 2009, 37:e1. 10.1093/nar/gkn883, 2615612, 18988632.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Zheng, Y.1
Posfai, J.2
Morgan, R.D.3
Vincze, T.4
Roberts, R.J.5
-
33
-
-
33751013018
-
Synthetic biology - putting engineering into biology
-
10.1093/bioinformatics/btl469, 16954140
-
Heinemann M, Panke S. Synthetic biology - putting engineering into biology. Bioinformatics 2006, 22:2790-2799. 10.1093/bioinformatics/btl469, 16954140.
-
(2006)
Bioinformatics
, vol.22
, pp. 2790-2799
-
-
Heinemann, M.1
Panke, S.2
-
34
-
-
46949091517
-
Refinement and standardization of synthetic biological parts and devices
-
10.1038/nbt1413, 18612302
-
Canton B, Labno A, Endy D. Refinement and standardization of synthetic biological parts and devices. Nature Biotechnology 2008, 26:787-793. 10.1038/nbt1413, 18612302.
-
(2008)
Nature Biotechnology
, vol.26
, pp. 787-793
-
-
Canton, B.1
Labno, A.2
Endy, D.3
-
35
-
-
0347762731
-
Exploring the overproduction of amino acids using the bilevel optimization framework OptKnock
-
10.1002/bit.10857, 14708128
-
Pharkya P, Burgard AP, Maranas CD. Exploring the overproduction of amino acids using the bilevel optimization framework OptKnock. Biotechnol Bioeng 2003, 84:887-899. 10.1002/bit.10857, 14708128.
-
(2003)
Biotechnol Bioeng
, vol.84
, pp. 887-899
-
-
Pharkya, P.1
Burgard, A.P.2
Maranas, C.D.3
-
36
-
-
45749137679
-
Minimal Escherichia coli cell for the most efficient production of ethanol from hexoses and pentoses
-
10.1128/AEM.02708-07, 2446564, 18424547
-
Trinh CT, Unrean P, Srienc F. Minimal Escherichia coli cell for the most efficient production of ethanol from hexoses and pentoses. Applied and Environmental Microbiology 2008, 74:3634-3643. 10.1128/AEM.02708-07, 2446564, 18424547.
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 3634-3643
-
-
Trinh, C.T.1
Unrean, P.2
Srienc, F.3
-
37
-
-
0019862590
-
The nucleotide sequence and protein-coding capability of the transposable element IS5
-
10.1016/0378-1119(81)90111-6, 6269958
-
Engler JA, van Bree MP. The nucleotide sequence and protein-coding capability of the transposable element IS5. Gene 1981, 14:155-163. 10.1016/0378-1119(81)90111-6, 6269958.
-
(1981)
Gene
, vol.14
, pp. 155-163
-
-
Engler, J.A.1
van Bree, M.P.2
-
38
-
-
0002734187
-
Bacterial Insertion Sequences
-
Washington, D.C.: American Society for Microbiology, Berg DE, Howe MM
-
Galas DJ, Chandler M. Bacterial Insertion Sequences. Mobile DNA 1989, 109-162. Washington, D.C.: American Society for Microbiology, Berg DE, Howe MM.
-
(1989)
Mobile DNA
, pp. 109-162
-
-
Galas, D.J.1
Chandler, M.2
-
39
-
-
0033786720
-
Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements
-
1461276, 11014799
-
Schneider D, Duperchy E, Coursange E, Lenski RE, Blot M. Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements. Genetics 2000, 156:477-488. 1461276, 11014799.
-
(2000)
Genetics
, vol.156
, pp. 477-488
-
-
Schneider, D.1
Duperchy, E.2
Coursange, E.3
Lenski, R.E.4
Blot, M.5
-
40
-
-
56049123424
-
Genetic basis of evolutionary adaptation by Escherichia coli to stressful cycles of freezing, thawing and growth
-
10.1534/genetics.108.091330, 2535694, 18757947
-
Sleight SC, Orlic C, Schneider D, Lenski RE. Genetic basis of evolutionary adaptation by Escherichia coli to stressful cycles of freezing, thawing and growth. Genetics 2008, 180:431-443. 10.1534/genetics.108.091330, 2535694, 18757947.
-
(2008)
Genetics
, vol.180
, pp. 431-443
-
-
Sleight, S.C.1
Orlic, C.2
Schneider, D.3
Lenski, R.E.4
-
41
-
-
41549115091
-
The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse
-
10.1128/JB.01695-07, 2293198, 18245285
-
Durfee T, Nelson R, Baldwin S, Plunkett G, Burland V, Mau B, Petrosino JF, Qin X, Muzny DM, Ayele M, et al. The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J Bacteriol 2008, 190:2597-2606. 10.1128/JB.01695-07, 2293198, 18245285.
-
(2008)
J Bacteriol
, vol.190
, pp. 2597-2606
-
-
Durfee, T.1
Nelson, R.2
Baldwin, S.3
Plunkett, G.4
Burland, V.5
Mau, B.6
Petrosino, J.F.7
Qin, X.8
Muzny, D.M.9
Ayele, M.10
-
42
-
-
0345442485
-
Vector for IS element entrapment and functional characterization based on turning on expression of distal promoterless genes
-
10.1016/0378-1119(96)00407-6, 8863735
-
Szeverényi I, Hodel A, Arber W, Olasz F. Vector for IS element entrapment and functional characterization based on turning on expression of distal promoterless genes. Gene 1996, 174:103-110. 10.1016/0378-1119(96)00407-6, 8863735.
-
(1996)
Gene
, vol.174
, pp. 103-110
-
-
Szeverényi, I.1
Hodel, A.2
Arber, W.3
Olasz, F.4
-
43
-
-
0026604410
-
Spontaneous transposition in the bacteriophage lambda cro gene residing on a plasmid
-
Skaliter R, Eichenbaum Z, Shwartz H, Ascarelli-Goell R, Livneh Z. Spontaneous transposition in the bacteriophage lambda cro gene residing on a plasmid. Mutat Res 1992, 267:139-151.
-
(1992)
Mutat Res
, vol.267
, pp. 139-151
-
-
Skaliter, R.1
Eichenbaum, Z.2
Shwartz, H.3
Ascarelli-Goell, R.4
Livneh, Z.5
-
44
-
-
0025998564
-
Genetic evidence against intramolecular rejoining of the donor DNA molecule following IS10 transposition
-
1204543, 1655563
-
Bender J, Kuo J, Kleckner N. Genetic evidence against intramolecular rejoining of the donor DNA molecule following IS10 transposition. Genetics 1991, 128:687-694. 1204543, 1655563.
-
(1991)
Genetics
, vol.128
, pp. 687-694
-
-
Bender, J.1
Kuo, J.2
Kleckner, N.3
-
45
-
-
35649012025
-
Improved recombinational stability of lentiviral expression vectors using reduced-genome Escherichia coli
-
10.2144/000112585, 18019337
-
Chakiath CS, Esposito D. Improved recombinational stability of lentiviral expression vectors using reduced-genome Escherichia coli. Biotechniques 2007, 43:466-470. 10.2144/000112585, 18019337.
-
(2007)
Biotechniques
, vol.43
, pp. 466-470
-
-
Chakiath, C.S.1
Esposito, D.2
|