-
1
-
-
0242405537
-
Structural and mechanistic insight from high resolution structures of archaeal rhodopsins
-
DOI 10.1016/S0014-5793(03)01082-2
-
E.M. Landau, E. Pebay-Peyroula, and R. Neutze Structural and mechanistic insight from high resolution structures of archaeal rhodopsins FEBS Lett. 555 2003 51 56 (Pubitemid 37431096)
-
(2003)
FEBS Letters
, vol.555
, Issue.1
, pp. 51-56
-
-
Landau, E.M.1
Pebay-Peyroula, E.2
Neutze, R.3
-
2
-
-
2342460436
-
Bacteriorhodopsin
-
DOI 10.1146/annurev.physiol.66.032102.150049
-
J.K. Lanyi Bacteriorhodopsin Annu. Rev. Physiol. 66 2004 665 688 (Pubitemid 40614459)
-
(2004)
Annual Review of Physiology
, vol.66
, pp. 665-688
-
-
Lanyi, J.K.1
-
3
-
-
0034734246
-
Atomic resolution structures of bacteriorhodopsin photocycle intermediates: The role of discrete water molecules in the function of this light-driven ion pump
-
H. Luecke Atomic resolution structures of bacteriorhodopsin photocycle intermediates: the role of discrete water molecules in the function of this light-driven ion pump Biochim. Biophys. Acta 1460 2000 133 156
-
(2000)
Biochim. Biophys. Acta
, vol.1460
, pp. 133-156
-
-
Luecke, H.1
-
4
-
-
0024289369
-
Vibrational spectroscopy of bacteriorhodopsin mutants: Light-driven proton transport involves protonation changes of aspartic acid residues 85, 96, and 212
-
M.S. Braiman, T. Mogi, T. Marti, L.J. Stern, H.G. Khorana, and K.J. Rothschild Vibrational spectroscopy of bacteriorhodopsin mutants: light-driven proton transport involves protonation changes of aspartic acid residues 85, 96, and 212 Biochemistry 27 1988 8516 8520
-
(1988)
Biochemistry
, vol.27
, pp. 8516-8520
-
-
Braiman, M.S.1
Mogi, T.2
Marti, T.3
Stern, L.J.4
Khorana, H.G.5
Rothschild, K.J.6
-
5
-
-
0025629995
-
Simultaneous monitoring of light-induced changes in protein side-group protonation, chromophore isomerization, and backbone motion of bacteriorhodopsin by time-resolved Fourier-transform infrared spectroscopy
-
K. Gerwert, G. Souvignier, and B. Hess Simultaneous monitoring of light-induced changes in protein side-group protonation, chromophore isomerization, and backbone motion of bacteriorhodopsin by time-resolved Fourier-transform infrared spectroscopy Proc. Natl. Acad. Sci. U. S. A. 87 1990 9774 9778 (Pubitemid 120016526)
-
(1990)
Proceedings of the National Academy of Sciences of the United States of America
, vol.87
, Issue.24
, pp. 9774-9778
-
-
Gerwert, K.1
Souvignier, G.2
Hess, B.3
-
6
-
-
0034640206
-
Proton transfer reactions across bacteriorhodopsin and along the membrane
-
DOI 10.1016/S0005-2728(00)00064-5, PII S0005272800000645
-
J. Heberle Proton transfer reactions across bacteriorhodopsin and along the membrane Biochim. Biophys. Acta 1458 2000 135 147 (Pubitemid 30254255)
-
(2000)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1458
, Issue.1
, pp. 135-147
-
-
Heberle, J.1
-
7
-
-
0026643216
-
FTIR difference spectroscopy of bacteriorhodopsin: Toward a molecular model
-
K.J. Rothschild FTIR difference spectroscopy of bacteriorhodopsin: toward a molecular model J. Bioenerg. Biomembr. 24 1992 147 167
-
(1992)
J. Bioenerg. Biomembr.
, vol.24
, pp. 147-167
-
-
Rothschild, K.J.1
-
8
-
-
0028997924
-
Conversion of bacteriorhodopsin into a chloride ion pump
-
J. Sasaki, L.S. Brown, Y.S. Chon, H. Kandori, A. Maeda, R. Needleman, and J.K. Lanyi Conversion of bacteriorhodopsin into a chloride ion pump Science 269 1995 73 75
-
(1995)
Science
, vol.269
, pp. 73-75
-
-
Sasaki, J.1
Brown, L.S.2
Chon, Y.S.3
Kandori, H.4
Maeda, A.5
Needleman, R.6
Lanyi, J.K.7
-
9
-
-
0033529279
-
The nop-1 gene of Neurospora crassa encodes a seven transmembrane helix retinal-binding protein homologous to archaeal rhodopsins
-
DOI 10.1073/pnas.96.14.8034
-
J.A. Bieszke, E.L. Braun, L.E. Bean, S. Kang, D.O. Natvig, and K.A. Borkovich The nop-1 gene of Neurospora crassa encodes a seven transmembrane helix retinal-binding protein homologous to archaeal rhodopsins Proc. Natl. Acad. Sci. U. S. A. 96 1999 8034 8039 (Pubitemid 29328403)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.14
, pp. 8034-8039
-
-
Bieszke, J.A.1
Braun, E.L.2
Bean, L.E.3
Kang, S.4
Natvig, D.O.5
Borkovich, K.A.6
-
10
-
-
1942420423
-
Microbial rhodopsins: Transport and sensory proteins throughout the three domains of life
-
W.M. Horspool, F. Lenci, CRC Press Boca Raton, FL
-
K.H. Jung, and J.L. Spudich Microbial rhodopsins: transport and sensory proteins throughout the three domains of life W.M. Horspool, F. Lenci, CRC Handbook of Organic Photochemistry and Photobiology 2004 CRC Press Boca Raton, FL 124/121 124/
-
(2004)
CRC Handbook of Organic Photochemistry and Photobiology
-
-
Jung, K.H.1
Spudich, J.L.2
-
11
-
-
0037189362
-
Channelrhodopsin-1: A light-gated proton channel in green algae
-
DOI 10.1126/science.1072068
-
G. Nagel, D. Ollig, M. Fuhrmann, S. Kateriya, A.M. Musti, E. Bamberg, and P. Hegemann Channelrhodopsin-1: a light-gated proton channel in green algae Science 296 2002 2395 2398 (Pubitemid 34734214)
-
(2002)
Science
, vol.296
, Issue.5577
, pp. 2395-2398
-
-
Nagel, G.1
Ollig, D.2
Fuhrmann, M.3
Kateriya, S.4
Musti, A.M.5
Bamberg, E.6
Hegemann, P.7
-
12
-
-
0038009383
-
Novel dinoflagellate clock-related genes identified through microarray analysis
-
DOI 10.1046/j.1529-8817.2003.02170.x
-
O.K. Okamoto, and J.W. Hastings Novel dinoflagellate clock-related genes identified through microarray analysis J. Phycol. 39 2003 519 526 (Pubitemid 36708721)
-
(2003)
Journal of Phycology
, vol.39
, Issue.3
, pp. 519-526
-
-
Okamoto, O.K.1
Hastings, J.W.2
-
14
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
O. Beja, L. Aravind, E.V. Koonin, M.T. Suzuki, A. Hadd, L.P. Nguyen, S.B. Jovanovich, C.M. Gates, R.A. Feldman, J.L. Spudich, E.N. Spudich, and E.F. DeLong Bacterial rhodopsin: evidence for a new type of phototrophy in the sea Science 289 2000 1902 1906
-
(2000)
Science
, vol.289
, pp. 1902-1906
-
-
Beja, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
Jovanovich, S.B.7
Gates, C.M.8
Feldman, R.A.9
Spudich, J.L.10
Spudich, E.N.11
Delong, E.F.12
-
15
-
-
0242331634
-
Proteorhodopsin genes are distributed among divergent marine bacterial taxa
-
DOI 10.1073/pnas.2133554100
-
J.R. de la Torre, L.M. Christianson, O. Beja, M.T. Suzuki, D.M. Karl, J. Heidelberg, and E.F. DeLong Proteorhodopsin genes are distributed among divergent marine bacterial taxa Proc. Natl. Acad. Sci. U. S. A. 100 2003 12830 12835 (Pubitemid 37339985)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.22
, pp. 12830-12835
-
-
De La Torre, J.R.1
Christianson, L.M.2
Beja, O.3
Suzuki, M.T.4
Karl, D.M.5
Heidelberg, J.6
DeLong, E.F.7
-
16
-
-
0037346546
-
Demonstration of a sensory rhodopsin in eubacteria
-
DOI 10.1046/j.1365-2958.2003.03395.x
-
K.H. Jung, V.D. Trivedi, and J.L. Spudich Demonstration of a sensory rhodopsin in eubacteria Mol. Microbiol. 47 2003 1513 1522 (Pubitemid 36363336)
-
(2003)
Molecular Microbiology
, vol.47
, Issue.6
, pp. 1513-1522
-
-
Jung, K.-H.1
Trivedi, V.D.2
Spudich, J.L.3
-
17
-
-
0035979995
-
Photochemical reaction cycle and proton transfers in Neurospora rhodopsin
-
L.S. Brown, A.K. Dioumaev, J.K. Lanyi, E.N. Spudich, and J.L. Spudich Photochemical reaction cycle and proton transfers in Neurospora rhodopsin J. Biol. Chem. 276 2001 32495 32505
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 32495-32505
-
-
Brown, L.S.1
Dioumaev, A.K.2
Lanyi, J.K.3
Spudich, E.N.4
Spudich, J.L.5
-
18
-
-
18744369621
-
Leptosphaeria rhodopsin: Bacteriorhodopsin-like proton pump from a eukaryote
-
DOI 10.1073/pnas.0409659102
-
S.A. Waschuk, A.G. Bezerra Jr., L. Shi, and L.S. Brown Leptosphaeria rhodopsin: bacteriorhodopsin-like proton pump from a eukaryote Proc. Natl. Acad. Sci. U. S. A. 102 2005 6879 6883 (Pubitemid 40675410)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.19
, pp. 6879-6883
-
-
Waschuk, S.A.1
Bezerra Jr., A.G.2
Shi, L.3
Brown, L.S.4
-
19
-
-
0035859080
-
Proteorhodopsin phototrophy in the ocean
-
DOI 10.1038/35081051
-
O. Beja, E.N. Spudich, J.L. Spudich, M. Leclerc, and E.F. DeLong Proteorhodopsin phototrophy in the ocean Nature 411 2001 786 789 (Pubitemid 32588098)
-
(2001)
Nature
, vol.411
, Issue.6839
, pp. 786-789
-
-
Beja, O.1
Spudich, E.N.2
Spudich, J.L.3
Leclerc, M.4
DeLong, E.F.5
-
20
-
-
0037197668
-
Proton transfers in the photochemical reaction cycle of proteorhodopsin
-
DOI 10.1021/bi025563x
-
A.K. Dioumaev, L.S. Brown, J. Shih, E.N. Spudich, J.L. Spudich, and J.K. Lanyi Proton transfers in the photochemical reaction cycle of proteorhodopsin Biochemistry 41 2002 5348 5358 (Pubitemid 34429369)
-
(2002)
Biochemistry
, vol.41
, Issue.17
, pp. 5348-5358
-
-
Dioumaev, A.K.1
Brown, L.S.2
Shih, J.3
Spudich, E.N.4
Spudich, J.L.5
Lanyi, J.K.6
-
21
-
-
0036382848
-
Proteorhodopsin is a light-driven proton pump with variable vectoriality
-
T. Friedrich, S. Geibel, R. Kalmbach, I. Chizhov, K. Ataka, J. Heberle, M. Engelhard, and E. Bamberg Proteorhodopsin is a light-driven proton pump with variable vectoriality J. Mol. Biol. 321 2002 821 838
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 821-838
-
-
Friedrich, T.1
Geibel, S.2
Kalmbach, R.3
Chizhov, I.4
Ataka, K.5
Heberle, J.6
Engelhard, M.7
Bamberg, E.8
-
22
-
-
0038390509
-
Proton transport by proteorhodopsin requires that the retinal Schiff base counterion Asp-97 be anionic
-
DOI 10.1021/bi034253r
-
A.K. Dioumaev, J.M. Wang, Z. Balint, G. Varo, and J.K. Lanyi Proton transport by proteorhodopsin requires that the retinal Schiff base counterion Asp-97 be anionic Biochemistry 42 2003 6582 6587 (Pubitemid 36665834)
-
(2003)
Biochemistry
, vol.42
, Issue.21
, pp. 6582-6587
-
-
Dioumaev, A.K.1
Wang, J.M.2
Balint, Z.3
Varo, G.4
Lanyi, J.K.5
-
23
-
-
84862777498
-
Crystal structure of the channelrhodopsin light-gated cation channel
-
H.E. Kato, F. Zhang, O. Yizhar, C. Ramakrishnan, T. Nishizawa, K. Hirata, J. Ito, Y. Aita, T. Tsukazaki, S. Hayashi, P. Hegemann, A.D. Maturana, R. Ishitani, K. Deisseroth, and O. Nureki Crystal structure of the channelrhodopsin light-gated cation channel Nature 482 2012 369 374
-
(2012)
Nature
, vol.482
, pp. 369-374
-
-
Kato, H.E.1
Zhang, F.2
Yizhar, O.3
Ramakrishnan, C.4
Nishizawa, T.5
Hirata, K.6
Ito, J.7
Aita, Y.8
Tsukazaki, T.9
Hayashi, S.10
Hegemann, P.11
Maturana, A.D.12
Ishitani, R.13
Deisseroth, K.14
Nureki, O.15
-
24
-
-
0034734254
-
Role of internal water molecules in bacteriorhodopsin
-
H. Kandori Role of internal water molecules in bacteriorhodopsin Biochim. Biophys. Acta 1460 2000 177 191
-
(2000)
Biochim. Biophys. Acta
, vol.1460
, pp. 177-191
-
-
Kandori, H.1
-
25
-
-
0021103472
-
Investigation of the primary photochemistry of bacteriorhodopsin by low-temperature Fourier-transform infrared spectroscopy
-
F. Siebert, and W. Mantele Investigation of the primary photochemistry of bacteriorhodopsin by low-temperature Fourier-transform infrared spectroscopy Eur. J. Biochem./FEBS 130 1983 565 573
-
(1983)
Eur. J. Biochem./FEBS
, vol.130
, pp. 565-573
-
-
Siebert, F.1
Mantele, W.2
-
26
-
-
61749098218
-
Proton release group of pharaonis phoborhodopsin revealed by ATR-FTIR spectroscopy
-
Y. Kitade, Y. Furutani, N. Kamo, and H. Kandori Proton release group of pharaonis phoborhodopsin revealed by ATR-FTIR spectroscopy Biochemistry 48 2009 1595 1603
-
(2009)
Biochemistry
, vol.48
, pp. 1595-1603
-
-
Kitade, Y.1
Furutani, Y.2
Kamo, N.3
Kandori, H.4
-
27
-
-
3242708681
-
The molecular mechanism of membrane proteins probed by evanescent infrared waves
-
DOI 10.1002/cbic.200300687
-
R.M. Nyquist, K. Ataka, and J. Heberle The molecular mechanism of membrane proteins probed by evanescent infrared waves Chembiochem: Eur. J. Chem. biol. 5 2004 431 436 (Pubitemid 39257098)
-
(2004)
ChemBioChem
, vol.5
, Issue.4
, pp. 431-436
-
-
Nyquist, R.M.1
Ataka, K.2
Heberle, J.3
-
28
-
-
34249706283
-
Methods to probe protein transitions with ATR infrared spectroscopy
-
DOI 10.1039/b702328f
-
P.R. Rich, and M. Iwaki Methods to probe protein transitions with ATR infrared spectroscopy Mol. Biosyst. 3 2007 398 407 (Pubitemid 46838788)
-
(2007)
Molecular BioSystems
, vol.3
, Issue.6
, pp. 398-407
-
-
Rich, P.R.1
Iwaki, M.2
-
29
-
-
0000557270
-
Protein structural changes in bacteriorhodopsin upon photoisomerization as revealed by polarized FTIR spectroscopy
-
H. Kandori, N. Kinoshita, Y. Shichida, and A. Maeda Protein structural changes in bacteriorhodopsin upon photoisomerization as revealed by polarized FTIR spectroscopy Journal of Physical Chemistry B 102 1998 7899 7905 (Pubitemid 128576846)
-
(1998)
Journal of Physical Chemistry B
, vol.102
, Issue.40
, pp. 7899-7905
-
-
Kandori, H.1
Kinoshita, N.2
Shichida, Y.3
Maeda, A.4
-
30
-
-
0034731017
-
Direct observation of the bridged water stretching vibrations inside a protein
-
H. Kandori, and Y. Shichida Direct observation of the bridged water stretching vibrations inside a protein J. Am. Chem. Soc. 122 2000 11745 11746
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 11745-11746
-
-
Kandori, H.1
Shichida, Y.2
-
31
-
-
0242362271
-
Water Molecules in the Schiff Base Region of Bacteriorhodopsin
-
DOI 10.1021/ja037343s
-
M. Shibata, T. Tanimoto, and H. Kandori Water molecules in the Schiff base region of bacteriorhodopsin J. Am. Chem. Soc. 125 2003 13312 13313 (Pubitemid 37352090)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.44
, pp. 13312-13313
-
-
Shibata, M.1
Tanimoto, T.2
Kandori, H.3
-
32
-
-
0034321020
-
Proton transfer in bacteriorhodopsin: Structure, excitation, IR spectra, and potential energy surface analyses by an ab initio QM/MM method
-
DOI 10.1021/jp001508r
-
S. Hayashi, and I. Ohmine Proton transfer in bacteriorhodopsin: structure, excitation, IR spectra, and potential energy surface analyses by an ab initio QM/MM method J. Phys. Chem. B 104 2000 10678 10691 (Pubitemid 32021481)
-
(2000)
Journal of Physical Chemistry B
, vol.104
, Issue.45
, pp. 10678-10691
-
-
Hayashi, S.1
Ohmine, I.2
-
33
-
-
0037418568
-
Structural changes of water in the Schiff base region of bacteriorhodopsin: Proposal of a hydration switch model
-
DOI 10.1021/bi026990d
-
T. Tanimoto, Y. Furutani, and H. Kandori Structural changes of water in the Schiff base region of bacteriorhodopsin: proposal of a hydration switch models Biochemistry 42 2003 2300 2306 (Pubitemid 36255204)
-
(2003)
Biochemistry
, vol.42
, Issue.8
, pp. 2300-2306
-
-
Tanimoto, T.1
Furutani, Y.2
Kandori, H.3
-
34
-
-
57449095198
-
Key role of active-site water molecules in bacteriorhodopsin proton-transfer reactions
-
A.N. Bondar, J. Baudry, S. Suhai, S. Fischer, and J.C. Smith Key role of active-site water molecules in bacteriorhodopsin proton-transfer reactions J. Phys. Chem. B 112 2008 14729 14741
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 14729-14741
-
-
Bondar, A.N.1
Baudry, J.2
Suhai, S.3
Fischer, S.4
Smith, J.C.5
-
35
-
-
0042967503
-
Structural changes of water molecules during the photoactivation processes in bovine rhodopsin
-
DOI 10.1021/bi034592k
-
Y. Furutani, Y. Shichida, and H. Kandori Structural changes of water molecules during the photoactivation processes in bovine rhodopsin Biochemistry 42 2003 9619 9625 (Pubitemid 37006305)
-
(2003)
Biochemistry
, vol.42
, Issue.32
, pp. 9619-9625
-
-
Furutani, Y.1
Shichida, Y.2
Kandori, H.3
-
36
-
-
0035951066
-
Internal water molecules of pharaonis phoborhodopsin studied by low-temperature infrared spectroscopy
-
DOI 10.1021/bi011621n
-
H. Kandori, Y. Furutani, K. Shimono, Y. Shichida, and N. Kamo Internal water molecules of pharaonis phoborhodopsin studied by low-temperature infrared spectroscopy Biochemistry 40 2001 15693 15698 (Pubitemid 34015197)
-
(2001)
Biochemistry
, vol.40
, Issue.51
, pp. 15693-15698
-
-
Kandori, H.1
Furutani, Y.2
Shimono, K.3
Shichida, Y.4
Kamo, N.5
-
37
-
-
18844385503
-
FTIR studies of internal water molecules in the Schiff base region of bacteriorhodopsin
-
DOI 10.1021/bi050122+
-
M. Shibata, and H. Kandori FTIR studies of internal water molecules in the Schiff base region of bacteriorhodopsin Biochemistry 44 2005 7406 7413 (Pubitemid 40695994)
-
(2005)
Biochemistry
, vol.44
, Issue.20
, pp. 7406-7413
-
-
Shibata, M.1
Kandori, H.2
-
38
-
-
3042586763
-
Internal water molecules of light-driven chloride pump proteins
-
M. Shibata, N. Muneda, K. Ihara, T. Sasaki, M. Demura, and H. Kandori Internal water molecules of light-driven chloride pump proteins Chem. Phys. Lett. 392 2004 330 333
-
(2004)
Chem. Phys. Lett.
, vol.392
, pp. 330-333
-
-
Shibata, M.1
Muneda, N.2
Ihara, K.3
Sasaki, T.4
Demura, M.5
Kandori, H.6
-
39
-
-
0033607149
-
A eukaryotic protein, NOP-1, binds retinal to form an archaeal rhodopsin-like photochemically reactive pigment
-
J.A. Bieszke, E.N. Spudich, K.L. Scott, K.A. Borkovich, and J.L. Spudich A eukaryotic protein, NOP-1, binds retinal to form an archaeal rhodopsin-like photochemically reactive pigment Biochemistry 38 1999 14138 14145
-
(1999)
Biochemistry
, vol.38
, pp. 14138-14145
-
-
Bieszke, J.A.1
Spudich, E.N.2
Scott, K.L.3
Borkovich, K.A.4
Spudich, J.L.5
-
40
-
-
3342894772
-
FTIR spectroscopy of the K photointermediate of Neurospora rhodopsin: Structural changes of the retinal, protein, and water molecules after photoisomerization
-
DOI 10.1021/bi049158c
-
Y. Furutani, A.G. Bezerra Jr., S. Waschuk, M. Sumii, L.S. Brown, and H. Kandori FTIR spectroscopy of the K photointermediate of Neurospora rhodopsin: structural changes of the retinal, protein, and water molecules after photoisomerization Biochemistry 43 2004 9636 9646 (Pubitemid 38993814)
-
(2004)
Biochemistry
, vol.43
, Issue.30
, pp. 9636-9646
-
-
Furutani, Y.1
Bezerra Jr., A.G.2
Waschuk, S.3
Sumii, M.4
Brown, L.S.5
Kandori, H.6
-
41
-
-
24944531148
-
Strongly hydrogen-bonded water molecules in the Schiff base region of rhodopsins
-
DOI 10.1039/b416698a
-
Y. Furutani, M. Shibata, and H. Kandori Strongly hydrogen-bonded water molecules in the Schiff base region of rhodopsins Photochem. Photobiol. Sci. 4 2005 661 666 (Pubitemid 41367014)
-
(2005)
Photochemical and Photobiological Sciences
, vol.4
, Issue.9
, pp. 661-666
-
-
Furutani, Y.1
Shibata, M.2
Kandori, H.3
-
42
-
-
0035058358
-
Characterization of an opsin gene from the ascomycete Leptosphaeria maculans
-
DOI 10.1139/gen-44-2-167
-
A. Idnurm, and B.J. Howlett Characterization of an opsin gene from the ascomycete Leptosphaeria maculans Genome 44 2001 167 171 (Pubitemid 32337452)
-
(2001)
Genome
, vol.44
, Issue.2
, pp. 167-171
-
-
Idnurm, A.1
Howlett, B.J.2
-
43
-
-
33745114416
-
Bacteriorhodopsin-like proteins of eubacteria and fungi: The extent of conservation of the haloarchaeal proton-pumping mechanism
-
DOI 10.1039/b514537f
-
L.S. Brown, and K.H. Jung Bacteriorhodopsin-like proteins of eubacteria and fungi: the extent of conservation of the haloarchaeal proton-pumping mechanism Photochem. Photobiol. Sci. 5 2006 538 546 (Pubitemid 43885917)
-
(2006)
Photochemical and Photobiological Sciences
, vol.5
, Issue.6
, pp. 538-546
-
-
Brown, L.S.1
Jung, K.-H.2
-
44
-
-
27944483321
-
Strongly hydrogen-bonded water molecule present near the retinal chromophore of Leptosphaeria rhodopsin, the bacteriorhodopsin-like proton pump from a eukaryote
-
DOI 10.1021/bi0513498
-
M. Sumii, Y. Furutani, S.A. Waschuk, L.S. Brown, and H. Kandori Strongly hydrogen-bonded water molecule present near the retinal chromophore of Leptosphaeria rhodopsin, the bacteriorhodopsin-like proton pump from a eukaryote Biochemistry 44 2005 15159 15166 (Pubitemid 41681450)
-
(2005)
Biochemistry
, vol.44
, Issue.46
, pp. 15159-15166
-
-
Sumii, M.1
Furutani, Y.2
Waschuk, S.A.3
Brown, L.S.4
Kandori, H.5
-
45
-
-
0030808219
-
Glutamate-194 to cysteine mutation inhibits fast light-induced proton release in bacteriorhodopsin
-
DOI 10.1021/bi970744y
-
S.P. Balashov, E.S. Imasheva, T.G. Ebrey, N. Chen, D.R. Menick, and R.K. Crouch Glutamate-194 to cysteine mutation inhibits fast light-induced proton release in bacteriorhodopsin Biochemistry 36 1997 8671 8676 (Pubitemid 27342511)
-
(1997)
Biochemistry
, vol.36
, Issue.29
, pp. 8671-8676
-
-
Balashov, S.P.1
Imasheva, E.S.2
Ebrey, T.G.3
Chen, N.4
Menick, D.R.5
Crouch, R.K.6
-
46
-
-
0024651574
-
Replacement of aspartic acid-96 by asparagine in bacteriorhodopsin slows both the decay of the M intermediate and the associated proton movement
-
M. Holz, L.A. Drachev, T. Mogi, H. Otto, A.D. Kaulen, M.P. Heyn, V.P. Skulachev, and H.G. Khorana Replacement of aspartic acid-96 by asparagine in bacteriorhodopsin slows both the decay of the M intermediate and the associated proton movement Proc. Natl. Acad. Sci. U. S. A. 86 1989 2167 2171
-
(1989)
Proc. Natl. Acad. Sci. U. S. A.
, vol.86
, pp. 2167-2171
-
-
Holz, M.1
Drachev, L.A.2
Mogi, T.3
Otto, H.4
Kaulen, A.D.5
Heyn, M.P.6
Skulachev, V.P.7
Khorana, H.G.8
-
47
-
-
0024024413
-
Aspartic acid substitutions affect proton translocation by bacteriorhodopsin
-
T. Mogi, L.J. Stern, T. Marti, B.H. Chao, and H.G. Khorana Aspartic acid substitutions affect proton translocation by bacteriorhodopsin Proc. Natl. Acad. Sci. U. S. A. 85 1988 4148 4152
-
(1988)
Proc. Natl. Acad. Sci. U. S. A.
, vol.85
, pp. 4148-4152
-
-
Mogi, T.1
Stern, L.J.2
Marti, T.3
Chao, B.H.4
Khorana, H.G.5
-
48
-
-
0031027477
-
Optical and electrical characterization of bacteriorhodopsin films
-
DOI 10.1016/S0303-2647(96)01665-6, PII S0303264796016656
-
T. Dyukova, B. Robertson, and H. Weetall Optical and electrical characterization of bacteriorhodopsin films Biosystems 41 1997 91 98 (Pubitemid 27075686)
-
(1997)
BioSystems
, vol.41
, Issue.2
, pp. 91-98
-
-
Dyukova, T.1
Robertson, B.2
Weetall, H.3
-
49
-
-
33845942015
-
Conformational coupling between the cytoplasmic carboxylic acid and the retinal in a fungal light-driven proton pump
-
DOI 10.1021/bi061864l
-
Y. Furutani, M. Sumii, Y. Fan, L.C. Shi, S.A. Waschuk, L.S. Brown, and H. Kandori Conformational coupling between the cytoplasmic carboxylic acid and the retinal in a fungal light-driven proton pump Biochemistry 45 2006 15349 15358 (Pubitemid 46032460)
-
(2006)
Biochemistry
, vol.45
, Issue.51
, pp. 15349-15358
-
-
Furutani, Y.1
Sumii, M.2
Fan, Y.3
Shi, L.4
Waschuk, S.A.5
Brown, L.S.6
Kandori, H.7
-
50
-
-
84867055631
-
Comparative FTIR study of a new fungal rhodopsin
-
H. Ito, M. Sumii, A. Kawanabe, Y. Fan, Y. Furutani, L.S. Brown, and H. Kandori Comparative FTIR study of a new fungal rhodopsin J. Phys. Chem. B 116 2012 11881 11889
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 11881-11889
-
-
Ito, H.1
Sumii, M.2
Kawanabe, A.3
Fan, Y.4
Furutani, Y.5
Brown, L.S.6
Kandori, H.7
-
51
-
-
23944505538
-
New insights into metabolic properties of marine bacteria encoding proteorhodopsins
-
G. Sabehi, A. Loy, K.H. Jung, R. Partha, J.L. Spudich, T. Isaacson, J. Hirschberg, M. Wagner, and O. Beja New insights into metabolic properties of marine bacteria encoding proteorhodopsins Plos Biol. 3 2005 1409 1417
-
(2005)
Plos Biol.
, vol.3
, pp. 1409-1417
-
-
Sabehi, G.1
Loy, A.2
Jung, K.H.3
Partha, R.4
Spudich, J.L.5
Isaacson, T.6
Hirschberg, J.7
Wagner, M.8
Beja, O.9
-
52
-
-
33646763173
-
Strongly hydrogen-bonded water molecule is observed only in the alkaline form of proteorhodopsin
-
Y. Furutani, D. Ikeda, M. Shibata, and H. Kandori Strongly hydrogen-bonded water molecule is observed only in the alkaline form of proteorhodopsin Chem. Phys. 324 2006 705 708
-
(2006)
Chem. Phys.
, vol.324
, pp. 705-708
-
-
Furutani, Y.1
Ikeda, D.2
Shibata, M.3
Kandori, H.4
-
53
-
-
34248193410
-
FTIR study of the retinal Schiff base and internal water molecules of proteorhodopsin
-
DOI 10.1021/bi700143g
-
D. Ikeda, Y. Furutani, and H. Kandori FTIR study of the retinal Schiff base and internal water molecules of proteorhodopsin Biochemistry 46 2007 5365 5373 (Pubitemid 46717261)
-
(2007)
Biochemistry
, vol.46
, Issue.18
, pp. 5365-5373
-
-
Ikeda, D.1
Furutani, Y.2
Kandori, H.3
-
54
-
-
0037076526
-
Vibrational frequency and dipolar orientation of the protonated Schiff base in bacteriorhodopsin before and after photoisomerization
-
DOI 10.1021/bi025585j
-
H. Kandori, M. Belenky, and J. Herzfeld Vibrational frequency and dipolar orientation of the protonated Schiff base in bacteriorhodopsin before and after photoisomerization Biochemistry 41 2002 6026 6031 (Pubitemid 34498908)
-
(2002)
Biochemistry
, vol.41
, Issue.19
, pp. 6026-6031
-
-
Kandori, H.1
Belenky, M.2
Herzfeld, J.3
-
55
-
-
0041320967
-
Molecular dynamics simulation of bacteriorhodopsin's photoisomerization using ab initio forces for the excited chromophore
-
S. Hayashi, E. Tajkhorshid, and K. Schulten Molecular dynamics simulation of bacteriorhodopsin's photoisomerization using ab initio forces for the excited chromophore Biophys. J. 85 2003 1440 1449 (Pubitemid 37052230)
-
(2003)
Biophysical Journal
, vol.85
, Issue.3
, pp. 1440-1449
-
-
Hayashi, S.1
Tajkhorshid, E.2
Schulten, K.3
-
56
-
-
0033609517
-
Structural change of threonine 89 upon photoisomerization in bacteriorhodopsin as revealed by polarized FTIR spectroscopy
-
H. Kandori, N. Kinoshita, Y. Yamazaki, A. Maeda, Y. Shichida, R. Needleman, J.K. Lanyi, M. Bizounok, J. Herzfeld, J. Raap, and J. Lugtenburg Structural change of threonine 89 upon photoisomerization in bacteriorhodopsin as revealed by polarized FTIR spectroscopy Biochemistry 38 1999 9676 9683
-
(1999)
Biochemistry
, vol.38
, pp. 9676-9683
-
-
Kandori, H.1
Kinoshita, N.2
Yamazaki, Y.3
Maeda, A.4
Shichida, Y.5
Needleman, R.6
Lanyi, J.K.7
Bizounok, M.8
Herzfeld, J.9
Raap, J.10
Lugtenburg, J.11
-
57
-
-
0025873898
-
Bacteriorhodopsin mutants containing single substitutions of serine or threonine residues are all active in proton translocation
-
T. Marti, H. Otto, T. Mogi, S.J. Rosselet, M.P. Heyn, and H.G. Khorana Bacteriorhodopsin mutants containing single substitutions of serine or threonine residues are all active in proton translocation J. Biol. Chem. 266 1991 6919 6927 (Pubitemid 21906312)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.11
, pp. 6919-6927
-
-
Marti, T.1
Otto, H.2
Mogi, T.3
Rosselet, S.J.4
Heyn, M.P.5
Khorana, H.G.6
-
58
-
-
79960979207
-
Proton transfer via a transient linear water-molecule chain in a membrane protein
-
E. Freier, S. Wolf, and K. Gerwert Proton transfer via a transient linear water-molecule chain in a membrane protein Proc. Natl. Acad. Sci. U. S. A. 108 2011 11435 11439
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 11435-11439
-
-
Freier, E.1
Wolf, S.2
Gerwert, K.3
-
59
-
-
14844347271
-
Proton binding within a membrane protein by a protonated water cluster
-
DOI 10.1073/pnas.0500421102
-
F. Garczarek, L.S. Brown, J.K. Lanyi, and K. Gerwert Proton binding within a membrane protein by a protonated water cluster Proc. Natl. Acad. Sci. U. S. A. 102 2005 3633 3638 (Pubitemid 40354663)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.10
, pp. 3633-3638
-
-
Garczarek, F.1
Brown, L.S.2
Lanyi, J.K.3
Gerwert, K.4
-
60
-
-
30144445932
-
Functional waters in intraprotein proton transfer monitored by FTIR difference spectroscopy
-
DOI 10.1038/nature04231
-
F. Garczarek, and K. Gerwert Functional waters in intraprotein proton transfer monitored by FTIR difference spectroscopy Nature 439 2006 109 112 (Pubitemid 43053638)
-
(2006)
Nature
, vol.439
, Issue.7072
, pp. 109-112
-
-
Garczarek, F.1
Gerwert, K.2
-
61
-
-
41449088527
-
Active internal waters in the bacteriorhodopsin photocycle. A comparative study of the L and M intermediates at room and cryogenic temperatures by infrared spectroscopy
-
DOI 10.1021/bi7024063
-
V.A. Lorenz-Fonfria, Y. Furutani, and H. Kandori Active internal waters in the bacteriorhodopsin photocycle. A comparative study of the L and M intermediates at room and cryogenic temperatures by infrared spectroscopy Biochemistry 47 2008 4071 4081 (Pubitemid 351458121)
-
(2008)
Biochemistry
, vol.47
, Issue.13
, pp. 4071-4081
-
-
Lorenz-Fonfria, V.A.1
Furutani, Y.2
Kandori, H.3
-
62
-
-
0032492706
-
Bacteriorhodopsin's intramolecular proton-release pathway consists of a hydrogen-bonded network
-
DOI 10.1021/bi971701k
-
R. Rammelsberg, G. Huhn, M. Lubben, and K. Gerwert Bacteriorhodopsin's intramolecular proton-release pathway consists of a hydrogen-bonded network Biochemistry 37 1998 5001 5009 (Pubitemid 28175982)
-
(1998)
Biochemistry
, vol.37
, Issue.14
, pp. 5001-5009
-
-
Rammelsberg, R.1
Huhn, G.2
Lubben, M.3
Gerwert, K.4
-
63
-
-
84867648725
-
Dynamics of dangling bonds of water molecules in pharaonis halorhodopsin during chloride ion transportation
-
Y. Furutani, K. Fujiwara, T. Kimura, T. Kikukawa, M. Demura, and H. Kandori Dynamics of dangling bonds of water molecules in pharaonis halorhodopsin during chloride ion transportation J. Phys. Chem. Lett. 3 2012 2964 2969
-
(2012)
J. Phys. Chem. Lett.
, vol.3
, pp. 2964-2969
-
-
Furutani, Y.1
Fujiwara, K.2
Kimura, T.3
Kikukawa, T.4
Demura, M.5
Kandori, H.6
-
64
-
-
0020479529
-
Halorhodopsin is a light-driven chloride pump
-
B. Schobert, and J.K. Lanyi Halorhodopsin is a light-driven chloride pump J. Biol. Chem. 257 1982 10306 10313
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 10306-10313
-
-
Schobert, B.1
Lanyi, J.K.2
-
65
-
-
0342484454
-
Analogies between halorhodopsin and bacteriorhodopsin
-
G. Varo Analogies between halorhodopsin and bacteriorhodopsin Biochim. Biophys. Acta 1460 2000 220 229
-
(2000)
Biochim. Biophys. Acta
, vol.1460
, pp. 220-229
-
-
Varo, G.1
-
66
-
-
0034874537
-
Temperature and halide dependence of the photocycle of halorhodopsin from Natronobacterium pharaonis
-
I. Chizhov, and M. Engelhard Temperature and halide dependence of the photocycle of halorhodopsin from Natronobacterium pharaonis Biophys. J. 81 2001 1600 1612 (Pubitemid 32783600)
-
(2001)
Biophysical Journal
, vol.81
, Issue.3
, pp. 1600-1612
-
-
Chizhov, I.1
Engelhard, M.2
-
67
-
-
34247272464
-
- circulation within the extracellular channel
-
DOI 10.1562/2006-06-09-RA-916
-
C. Hasegawa, T. Kikukawa, S. Miyauchi, A. Seki, Y. Sudo, M. Kubo, M. Demura, and N. Kamo Interaction of the halobacterial transducer to a halorhodopsin mutant engineered so as to bind the transducer: Cl - circulation within the extracellular channel Photochem. Photobiol. 83 2007 293 302 (Pubitemid 46623053)
-
(2007)
Photochemistry and Photobiology
, vol.83
, Issue.2
, pp. 293-302
-
-
Hasegawa, C.1
Kikukawa, T.2
Miyauchi, S.3
Seki, A.4
Sudo, Y.5
Kubo, M.6
Demura, M.7
Kamo, N.8
-
68
-
-
0028869129
-
Light-driven chloride ion transport by halorhodopsin from Natronobacterium pharaonis. 1. The photochemical cycle
-
G. Varo, L.S. Brown, J. Sasaki, H. Kandori, A. Maeda, R. Needleman, and J.K. Lanyi Light-driven chloride ion transport by halorhodopsin from Natronobacterium pharaonis. 1. The photochemical cycle Biochemistry 34 1995 14490 14499
-
(1995)
Biochemistry
, vol.34
, pp. 14490-14499
-
-
Varo, G.1
Brown, L.S.2
Sasaki, J.3
Kandori, H.4
Maeda, A.5
Needleman, R.6
Lanyi, J.K.7
-
69
-
-
0038692912
-
Ser-130 of Natronobacterium pharaonis halorhodopsin is important for the chloride binding
-
DOI 10.1016/S0301-4622(02)00368-X, PII S030146220200368X
-
M. Sato, T. Kikukawa, T. Araiso, H. Okita, K. Shimono, N. Kamo, M. Demura, and K. Nitta Ser-130 of Natronobacterium pharaonis halorhodopsin is important for the chloride binding Biophys. Chem. 104 2003 209 216 (Pubitemid 36794472)
-
(2003)
Biophysical Chemistry
, vol.104
, Issue.1
, pp. 209-216
-
-
Sato, M.1
Kikukawa, T.2
Araiso, T.3
Okita, H.4
Shimono, K.5
Kamo, N.6
Demura, M.7
Nitta, K.8
-
70
-
-
15444378199
-
Role of putative anion-binding sites in cytoplasmic and extracellular channels of Natronomonas pharaonis halorhodopsin
-
DOI 10.1021/bi047500f
-
M. Sato, M. Kubo, T. Aizawa, N. Kamo, T. Kikukawa, K. Nitta, and M. Demura Role of putative anion-binding sites in cytoplasmic and extracellular channels of Natronomonas pharaonis halorhodopsin Biochemistry 44 2005 4775 4784 (Pubitemid 40396756)
-
(2005)
Biochemistry
, vol.44
, Issue.12
, pp. 4775-4784
-
-
Sato, M.1
Kubo, M.2
Aizawa, T.3
Kamo, N.4
Kikukawa, T.5
Nitta, K.6
Demura, M.7
-
71
-
-
0034075676
-
Charge motions during the photocycle of pharaonis halorhodopsin
-
K. Ludmann, G. Ibron, J.K. Lanyi, and G. Varo Charge motions during the photocycle of pharaonis halorhodopsin Biophys. J. 78 2000 959 966 (Pubitemid 30211853)
-
(2000)
Biophysical Journal
, vol.78
, Issue.2
, pp. 959-966
-
-
Ludmann, K.1
Ibron, G.2
Lanyi, J.K.3
Varo, G.4
-
72
-
-
0028808334
-
Light-driven chloride ion transport by halorhodopsin from Natronobacterium pharaonis. 2. Chloride release and uptake, protein conformation change, and thermodynamics
-
G. Varo, R. Needleman, and J.K. Lanyi Light-driven chloride ion transport by halorhodopsin from Natronobacterium pharaonis. 2. Chloride release and uptake, protein conformation change, and thermodynamics Biochemistry 34 1995 14500 14507
-
(1995)
Biochemistry
, vol.34
, pp. 14500-14507
-
-
Varo, G.1
Needleman, R.2
Lanyi, J.K.3
-
73
-
-
67650359930
-
Reaction dynamics of halorhodopsin studied by time-resolved diffusion
-
K. Inoue, M. Kubo, M. Demura, N. Kamo, and M. Terazima Reaction dynamics of halorhodopsin studied by time-resolved diffusion Biophys. J. 96 2009 3724 3734
-
(2009)
Biophys. J.
, vol.96
, pp. 3724-3734
-
-
Inoue, K.1
Kubo, M.2
Demura, M.3
Kamo, N.4
Terazima, M.5
-
74
-
-
77949330298
-
Crystal structure of the light-driven chloride pump halorhodopsin from Natronomonas pharaonis
-
T. Kouyama, S. Kanada, Y. Takeguchi, A. Narusawa, M. Murakami, and K. Ihara Crystal structure of the light-driven chloride pump halorhodopsin from Natronomonas pharaonis J. Mol. Biol. 396 2010 564 579
-
(2010)
J. Mol. Biol.
, vol.396
, pp. 564-579
-
-
Kouyama, T.1
Kanada, S.2
Takeguchi, Y.3
Narusawa, A.4
Murakami, M.5
Ihara, K.6
-
75
-
-
24944531254
-
Hydrogen-bonding alterations of the protonated Schiff base and water molecule in the chloride pump of Natronobacterium pharaonis
-
DOI 10.1021/bi050726d
-
M. Shibata, N. Muneda, T. Sasaki, K. Shimono, N. Kamo, M. Demura, and H. Kandori Hydrogen-bonding alterations of the protonated Schiff base and water molecule in the chloride pump of Natronobacterium pharaonis Biochemistry 44 2005 12279 12286 (Pubitemid 41324321)
-
(2005)
Biochemistry
, vol.44
, Issue.37
, pp. 12279-12286
-
-
Shibata, M.1
Muneda, N.2
Sasaki, T.3
Shimono, K.4
Kamo, N.5
Demura, M.6
Kandori, H.7
-
76
-
-
3042592839
-
Hydration free energies and entropies for water in protein interiors
-
DOI 10.1021/ja049701c
-
L.R. Olano, and S.W. Rick Hydration free energies and entropies for water in protein interiors J. Am. Chem. Soc. 126 2004 7991 8000 (Pubitemid 38812791)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.25
, pp. 7991-8000
-
-
Olano, L.R.1
Rick, S.W.2
-
77
-
-
0033609904
-
Structure of bacteriorhodopsin at 1.55 A resolution
-
DOI 10.1006/jmbi.1999.3027
-
H. Luecke, B. Schobert, H.T. Richter, J.P. Cartailler, and J.K. Lanyi Structure of bacteriorhodopsin at 1.55 angstrom resolution J. Mol. Biol. 291 1999 899 911 (Pubitemid 29403619)
-
(1999)
Journal of Molecular Biology
, vol.291
, Issue.4
, pp. 899-911
-
-
Luecke, H.1
Schobert, B.2
Richter, H.-T.3
Cartailler, J.-P.4
Lanyi, J.K.5
-
78
-
-
0035852677
-
Tight Asp-85-Thr-89 association during the pump switch of bacteriorhodopsin
-
DOI 10.1073/pnas.98.4.1571
-
H. Kandori, Y. Yamazaki, Y. Shichida, J. Raap, J. Lugtenburg, M. Belenky, and J. Herzfeld Tight Asp-85-Thr-89 association during the pump switch of bacteriorhodopsin Proc. Natl. Acad. Sci. U. S. A. 98 2001 1571 1576 (Pubitemid 32165540)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.4
, pp. 1571-1576
-
-
Kandori, H.1
Yamazaki, Y.2
Shichida, Y.3
Raap, J.4
Lugtenburg, J.5
Belenky, M.6
Herzfeld, J.7
|