Interaction of the halobacterial transducer to a halorhodopsin mutant engineered so as to bind the transducer: Cl- circulation within the extracellular channel

Photochemistry and Photobiology

Volumn 83, Issue 2, 2007, Pages 293-302

  Hasegawa, Chisa ^a   Kikukawa, Takashi ^a   Miyauchi, Seiji ^a   Seki, Akiteru ^a   Sudo, Yuki ^a   Kubo, Megumi ^a   Demura, Makoto ^a   Kamo, Naoki ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL PROTEIN; CAROTENOID; CHLORIDE; HALORHODOPSIN; HTRII PROTEIN, NATRONOBACTERIUM PHARAONIS; PHOTOTAXIS RECEPTOR SENSORY RHODOPSIN II, NATRONOBACTERIUM PHARAONIS; RECOMBINANT PROTEIN; UNCLASSIFIED DRUG;

ANIMAL; BIOLOGICAL MODEL; BIOLOGY; CHEMISTRY; CONFERENCE PAPER; FEMALE; GENETICS; HALOBACTERIUM; IN VITRO STUDY; METABOLISM; OOCYTE; PHOTOLYSIS; PROTEIN ENGINEERING; SITE DIRECTED MUTAGENESIS; XENOPUS;

ANIMALS; ARCHAEAL PROTEINS; CAROTENOIDS; CHLORIDES; FEMALE; HALOBACTERIACEAE; HALORHODOPSINS; MODELS, BIOLOGICAL; MUTAGENESIS, SITE-DIRECTED; OOCYTES; PHOTOBIOLOGY; PHOTOLYSIS; PROTEIN ENGINEERING; RECOMBINANT PROTEINS; XENOPUS;

HALOPHILIC ARCHAEON; NATRONOMONAS PHARAONIS;

EID: 34247272464     PISSN: 00318655     EISSN: None     Source Type: Journal    
DOI: 10.1562/2006-06-09-RA-916     Document Type: Conference Paper

References (48)

1. Matsuno-Yagi, A. and Y. Mukohata (1980) ATP synthesis linked to light-dependent proton uptake in a red mutant strain of Halobacterium lacking bacteriorhodopsin. Arch. Biochem. Biophys. 199, 297-303.
2. Váró, G. (2000) Analogy between halorhodopsin and bacteriorhodopsin. Biochim. Biophys. Acta 1460, 220-229.
3. Essen, L. O (2002) Halorhodopsin: Light-driven ion pumping made simple? Curr. Opin. Struct. Biol. 12, 516-522.
4. Lanyi, J. K. and H. Luecke (2001) Bacteriorhodopsin. Curr. Opin. Struct. Biol. 11, 415-419.
5. Haupts, U., J. Tittor and D. Oesterhelt (1999) Closing in on bacteriorhodopsin: Progress in understanding the molecule. Annu. Rev. Biophys. Biomol. Struct. 28, 367-399.
6. Spudich, J. L. and R. A. Bogomolni (1984) Mechanism of color discrimination by a bacterial sensory rhodopsin. Nature 312, 509-513.
7. Hazemoto, N., N. Kamo, Y. Terayama, Y. Kobatake and M. Tsuda (1983) Photochemistry of two rhodopsin-like pigments in bacteriorhodopsin-free mutant of Halobacterium halobium. Biophys. J. 44, 59-64.
8. Takahashi, T., H. Tomioka, N. Kamo and Y. Kobatake (1985) A photosystem other than PS370 also mediates the negative phototaxis of Halobacterium halobium. FEMS Microbiol. Lett. 28, 161-164.
9. Tomioka, H., T. Takahashi, N. Kamo and Y. Kobatake (1986) Flash spectrophotometric identification of a 4th rhodopsin-like pigment in halobacterium halobium. Biochem. Biophys. Res. Commun. 139, 389-395.
10. Kamo, N., K. Shimono, M. Iwamoto and Y. Sudo (2001) Photochemistry and photoinduced proton-transfer by pharaonis phoborhodopsin. Biochemistry (Mosc) 66, 1277-1282.
11. Luecke, H., B. Schobert, J. K. Lanyi, E. N. Spudich and J. L. Spudich (2001) Crystal structure of sensory rhodopsin II at 2.4 angstroms: Insights into color tuning and transducer interaction. Science 293, 1499-1503.
12. Hoff, W. D., K. H. Jung and J. L. Spudich (1997) Molecular mechanism of photosignaling by archaeal sensory rhodopsins. Annu. Rev. Biophys. Biomol. Struct. 26, 223-258.
13. Sudo, Y., H. Kandori and N. Kamo (2004) Molecular mechanism of protein-protein interaction of pharaonis phoborhodopsin?transducer and photosignal transfer reaction by the complex. Recent Res. Devel. Biophys. 3, 1-16.
14. Zhang, X. N., J. Zhu and J. L. Spudich (1999) The specificity of interaction of archaeal transducers with their cognate sensory rhodopsins is determined by their transmembrane helices. Proc. Natl Acad. Sci. USA 96, 857-862.
15. Rudolph, J. and D. Oesterhelt (1996) Deletion analysis of the che operon in the archaeon Halobacterium salinarium. J. Mol. Biol. 258, 548-554.
16. Rudolph, J., B. Nordmann, K. F. Storch, H. Gruenberg, K. Rodewald and D. Oesterhelt (1996) A family of halobacterial transducer proteins. FEMS Microbiol. Lett. 139, 161-168.
17. Falke, J. J., R. B. Bass, S. L. Butler, S. A. Chervitz and M. A. Danielson (1997) The two-component signaling pathway of bacterial chemotaxis: A molecular view of signal transduction by receptors, kinases, and adaptation enzymes. Annu. Rev. Cell Dev. Biol. 13, 457-512.
18. Gordeliy, V. I., J. Labahn, R. Moukhametzianov, R. Efremov, J. Granzin, R. Schlesinger, G. Büldt, T. Savopol, A. J. Scheidig, J. P. Klare and M. Engelhard (2002) Molecular basis of transmembrane signalling by sensory rhodopsin II-transducer complex. Nature 419, 484-487.
19. Sudo, Y., M. Yamabi, S. Kato, C. Hasegawa, M. Iwamoto, K. Shimono and N. Kamo (2006) Importance of specific hydrogen bonds of archaeal rhodopsins for the binding to the transducer protein. J. Mol. Biol. 357, 1274-1282.
20. Sudo, Y., M. Iwamoto, K. Shimono and N. Kamo (2001) Pharaonis phoborhodopsin binds to its cognate truncated transducer even in the presence of a detergent with a 1:1 stoichiometry. Photochem. Photobiol. 74, 489-494.
21. Sato, M., M. Kubo, T. Aizawa, N. Kamo, T. Kikukawa, K. Nitta and M. Demura (2005) Role of putative anion-binding sites in cytoplasmic and extracellular channels of Natronomonas pharaonis halorhodopsin. Biochemistry 44, 4775-4784.
22. Sudo, Y., M. Yamabi, M. Iwamoto, K. Shimono and N. Kamo (2003) Interaction of Natronomonas pharaonis phoborhodopsin (sensory rhodopsin II) with its cognate transducer probed by increase in the thermal stability. Photochem. Photobiol. 78, 511-516.
23. Miyauchi, S., E. Gopal, Y. J. Fei and V. Ganapathy (2004) Functional identification of SLC5A8, a tumor suppressor downregulated in colon cancer, as a Na(+)-coupled transporter for short-chain fatty acids. J. Biol. Chem. 279, 13293-13296.
24. Chizhov, I., D. S. Chernavskii, M. Engelhard, K. H. Mueller, B. V. Zubov and B. Hess (1996) Spectrally silent transitions in the bacteriorhodopsin photocycle. Biophys. J. 71, 2329-2345.
25. Chizhov, I. and M. Engelhard (2001) Temperature and halide dependence of the photocycle of halorhodopsin from Natronobacterium pharaonis. Biophys. J. 81, 1600-1612.
26. + pumping. FEBS Lett. 377, 263-266.
27. Nagel, G., D. Ollig, M. Fuhrmann, S. Kateriya, A. M. Musti, E. Bamberg and P. Hegemann (2002) Channelrhodopsin-1: A light-gated proton channel in green algae. Science 296, 2395-2398.
28. Schmies, G., B. Lüttenberg, I. Chizhov, M. Engelhard, A. Becker and E. Bamberg (2000) Sensory rhodopsin II from the halo-alkaliphilic Natronobacterium pharaonis: Light-activated proton transfer reactions. Biophys. J. 78, 967-976.
29. Schmies, G., M. Engelhard, P. G. Wood, G. Nagel and E. Bamberg (2001) Electrophysiological characterization of specific interactions between bacterial sensory rhodopsins and their transducers. Proc. Natl Acad. Sci. USA 98, 1555-1559.
30. Hippler-Mreyen, S., J. P. Klare, A. A. Wegener, R. Seidel, C. Herrmann, G. Schmies, G. Nagel, E. Bamberg and M. Engelhard (2003) Probing the sensory rhodopsin II binding domain of its cognate transducer by calorimetry and electrophysiology. J. Mol. Biol. 330, 1203-1213.
31. Bogomolni, R. A., W. Stoeckenius, I. Szundi, E. Perozo, K. D. Olson and J. L. Spudich (1994) Removal of transducer HtrI allows electrogenic proton translocation by sensory rhodopsin I. Proc. Natl Acad. Sci. USA 91, 10188-10192.
32. Sudo, Y., M. Iwamoto, K. Shimono, M. Sumi and N. Kamo (2001) Photo-induced proton transport of pharaonis phoborhodopsin (sensory rhodopsin II) is ceased by association with the transducer. Biophys. J. 80, 916-922.
33. Váró , G., L. S. Brown, J. Sasaki, H. Kandori, A. Maeda, R. Needleman and J. K. Lanyi (1995) Light-driven chloride ion transport by halorhodopsin from Natronobacterium pharaonis. 1. The photochemical cycle. Biochemistry 34, 14490-14499.
34. Sato, M., T. Kanamori, N. Kamo, M. Demura and K. Nitta (2002) Stopped-flow analysis on anion binding to blue-form halorhodopsin from Natronobacterium pharaonis: Comparison with the anion-uptake process during the photocycle. Biochemistry 41, 2452-2458.
35. Zimanyi, L. and J. K. Lanyi (1989) Transient spectroscopy of bacterial rhodopsins with an optical multichannel analyzer. 2. Effects of anions on the halorhodopsin photocycle. Biochemistry 28, 5172-5179.
36. Ames, J. B., J. Raap, J. Lugtenburg and R. A. Mathies (1992) Resonance Raman study of halorhodopsin photocycle kinetics, chromophore structure, and chloride-pumping mechanism. Biochemistry 31, 12546-12554.
37. Váró , G., R. Needleman and J. K. Lanyi (1995) Light-driven chloride ion transport by halorhodopsin from Natronobacterium pharaonis. 2. Chloride release and uptake, protein conformation change, and thermodynamics. Biochemistry 34, 14500-14507.
38. Ludmann, K., G. Ibron, J. K. Lanyi and G. Váró (2000) Charge motions during the photocycle of pharaonis halorhodopsin. Biophys. J. 78, 959-966.
39. Kolbe, M., H. Besir, L. O. Essen and D. Oesterhelt (2000) Structure of the light-driven chloride pump halorhodopsin at 1.8 Å resolution. Science 288, 1390-1396.
40. Rüdiger, M. and D. Oesterhelt (1997) Specific arginine and threonine residues control anion binding and transport in the light driven chloride pump halorhodopsin. EMBO J. 16, 3813-3821.
41. Muneyuki, E., C. Shibazaki, H. Ohtani, D. Okuno, M. Asaumi and T. Mogi (1999) Time-resolved measurements of photovoltage generation by bacteriorhodopsin and halorhodopsin adsorbed on a thin polymer film. J. Biochem. (Tokyo) 125, 270-276.
42. Shibata, M., N. Muneda, T. Sasaki, K. Shimono, N. Kamo, M. Demura and H. Kandori (2005) Hydrogen-bonding alterations of the protonated Schiff base and water molecule in the chloride pump of Natronobacterium pharaonis. Biochemistry 44, 12279-12286.
43. Subramaniam, S. and R. Henderson (2000) Molecular mechanism of vectorial proton translocation by bacteriorhodopsin. Nature 406, 653-657.
44. Sass, H. J., G. Buldt, R. Gessenich, D. Hehn, D. Neff, R. Schlesinger, J. Berendzen and P. Ormos (2000) Structural alterations for proton translocation in the M state of wild-type bacteriorhodopsin. Nature 406, 649-653.
45. Vonck, J. (2000) Structure of the bacteriorhodopsin mutant F219L N intermediate revealed by electron crystallography. EMBO J. 19, 2152-2160.
46. Radzwill, N., K. Gerwert and H. J. Steinhoff (2001) Time-resolved detection of transient movement of helices F and G in doubly spin-labeled bacteriorhodopsin. Biophys. J. 80, 2856-2866.
47. Oka, T., N. Yagi, F. Tokunaga and M. Kataoka (2002) Time-resolved X-ray diffraction reveals movement of F helix of D96N bacteriorhodopsin during M-MN transition at neutral pH. Biophys. J. 82, 2610-2616.
48. Klare, J. P., E. Bordignon, M. Engelhard and H. J. Steinhoff (2004) Sensory rhodopsin II and bacteriorhodopsin: Light activated helix F movement. Photochem. Photobiol. Sci. 3, 543-547.