Structural changes of water in the Schiff base region of bacteriorhodopsin: Proposal of a hydration switch model

Biochemistry

Volumn 42, Issue 8, 2003, Pages 2300-2306

  Tanimoto, Taro ^a   Furutani, Yuji ^a   Kandori, Hideki ^a  

^a NAGOYA INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

PROTON-PUMP PROTEINS;

FOURIER TRANSFORM INFRARED SPECTROSCOPY; HYDRATION; HYDROGEN BONDS; ISOMERIZATION; PROTEINS;

WATER;

ASPARTIC ACID; BACTERIORHODOPSIN; MEMBRANE PROTEIN; SCHIFF BASE; WATER;

ARTICLE; CONFORMATIONAL TRANSITION; ELECTRIC POTENTIAL; HALOBACTERIUM; HYDRATION SWITCH MODEL; HYDROGEN BOND; INFRARED SPECTROSCOPY; ISOMERISM; LOW TEMPERATURE PROCEDURES; MOLECULAR INTERACTION; MOLECULAR MODEL; NONHUMAN; PKA; PRIORITY JOURNAL; PROTEIN STABILITY; PROTEIN STRUCTURE; PROTON TRANSPORT; STRUCTURE ANALYSIS;

ASPARTIC ACID; BACTERIORHODOPSINS; ENERGY TRANSFER; HALOBACTERIUM SALINARUM; HYDROGEN BONDING; MODELS, CHEMICAL; MODELS, MOLECULAR; PROTONS; SCHIFF BASES; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; STRUCTURE-ACTIVITY RELATIONSHIP; WATER;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); HALOBACTERIUM; UNCULTURED ACTINOMYCETE;

EID: 0037418568     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi026990d     Document Type: Article

References (49)

1. Gutman, M., and Nachliel, E. (1997) Annu. Rev. Phys. Chem. 48, 329-356.
2. Kandori, H. (2000) Biochim. Biophys. Acta 1460, 177-191.
3. Lanyi, J. K. (1998) J. Struct. Biol. 124, 164-178.
4. Haupts, U., Tittor, J., and Oesterhelt, D. (1999) Annu. Rev. Biophys. Biomol. Struct. 28, 367-399.
5. Luecke, H., Schobert, B., Richter, H.-T., Cartailler, J. P., and Lanyi, J. K. (1999) J. Mol. Biol. 291, 899-911.
6. Belrhali, H., Nollert, P., Royant, A., Menzel, C., Rosenbusch, J., Landau, E. M., and Pebay-Peyroula, E. (1999) Structure 7, 909-917.
7. Luecke, H. (2000) Biochim. Biophys. Acta 1460, 133-156.
8. Sasaki, J., Brown, L. S., Chon, Y.-S., Kandori, H., Maeda, A., Needleman, R., and Lanyi, J. K. (1995) Science 269, 73-75.
9. Edman, K., Nollert, P., Royant, A., Belrhali, H., Pebay-Peyroula, E., Hajdu, J., Neutze, R., and Landau, E. M. (1999) Nature 401, 822-826.
10. Schobert, B., Cupp-Vickery, J., Homak, V., Smith, S. O., and Lanyi, J. K. (2002) J. Mol. Biol. 321, 715-726.
11. Royant, A., Edman, K., Ursby, T., Pebay-Peyroula, E., Landau, E. M., and Neutze, R. (2000) Nature 406, 645-648.
12. Luecke, H., Schobert, B., Richter, H.-T., Cartailler, J. P., and Lanyi, J. K. (1999) Science 286, 255-261.
13. Luecke, H., Schobert, B., Cartailler, J.-P., Richter, H.-T., Rosengarth, A., Needleman, R., and Lanyi, J. K. (2000) J. Mol. Biol. 300, 1237-1255.
14. Sass, H. J., Büldt, G., Gessenich, R., Hehn, D., Neff, D., Schlesinger, R., Berendzen, J., and Ormos, P. (2000) Nature 406, 649-653.
15. Facciotti, M. T., Rouhani, S., Burkard, F. T., Betancourt, F. M., Downing, K. H., Rose, R. B., McDermott, G., and Glaeser, R. M. (2002) Biophys. J. 81, 3442-3455.
16. Lanyi, J. K., and Schobert, B. (2002) J. Mol. Biol. 321, 727-737.
17. Maeda, A., Sasaki, J., Shichida, Y., and Yoshizawa, T. (1992) Biochemistry 31, 462-467.
18. Maeda, A., Sasaki, J., Yamazaki, Y., Needleman, R., and Lanyi, J. K. (1994) Biochemistry 33, 1713-1717.
19. Fischer, W. B., Sonar, S., Marti, T., Khorana, H. G., and Rothschild, K. J. (1994) Biochemistry 33, 12757-12762.
20. Kandori, H., Yamazaki, Y., Sasaki, J., Needleman, R., Lanyi, J. K., and Maeda, A. (1995) J. Am. Chem. Soc. 117, 2118-2119.
21. Yamazaki, Y., Hatanaka, M., Kandori, H., Sasaki, J., Jan Karstens, W. F., Raap, J., Lugtenburg, J., Bizounok, M., Herzfeld, J., Needleman, R., Lanyi, J. K., and Maeda, A. (1995) Biochemistry 34, 7088-7093.
22. Brown, L. S., Sasaki, J., Kandori, H., Maeda, A., Needleman, R., and Lanyi, J. K. (1995) J. Biol. Chem. 270, 27122-27126.
23. Yamazaki, Y., Tuzi, S., Saitô, H., Kandori, H., Needleman, R., Lanyi, J. K., and Maeda, A. (1996) Biochemistry 35, 4063-4068.
24. Hatanaka, M., Sasaki, J., Kandori, H., Ebrey, T. G., Needleman, R., Lanyi, J. K., and Maeda, A. (1996) Biochemistry 35, 6308-6312.
25. Chon, Y.-S., Sasaki, J., Kandori, H., Brown, L. S., Lanyi, J. K., Needleman, R., and Maeda, A. (1996) Biochemistry 35, 14244-14250.
26. Hatanaka, M., Kashima, R., Kandori, H., Friedman, N., Sheves, M., Needleman, R., Lanyi, J. K., and Maeda, A. (1997) Biochemistry 36, 5493-5498.
27. Hatanaka, M., Kandori, H., and Maeda, A. (1997) Biophys. J. 73, 1001-1006.
28. Yamazaki, Y., Kandori, H., Needleman, R., Lanyi, J. K., and Maeda, A. (1998) Biochemistry 37, 1559-1564.
29. Maeda, A., Tomson, F. L., Gennis, R. B., Ebrey, T. G., and Balashov, S. P. (1999) Biochemistry 38, 8800-8807.
30. Maeda, A., Tomson, F. L., Gennis, R. B., Kandori, H., Ebrey, T. G., and Balashov, S. P. (2000) Biochemistry 39, 10154-10162.
31. Kandori, H., Kinoshita, N., Maeda, A., and Shichida, Y. (1998) J. Phys. Chem. B 102, 7899-7905.
32. Kandori, H., and Shichida, Y. (2000) J. Am. Chem. Soc. 122, 11745-11746.
33. Hayashi, S., and Ohmine, I. (2000) J. Phys. Chem. B 104, 10678-10691.
34. Kandori, H., Kinoshita, N., Yamazaki, Y., Maeda, A., Shichida, Y., Needleman, R., Lanyi, J. K., Bizounok, M., Herzfeld, J., Raap, J., and Lugtenburg, J. (1999) Biochemistry 38, 9676-9683.
35. Kandori, H., Kinoshita, N., Yamazaki, Y., Maeda, A., Shichida, Y., Needleman, R., Lanyi, J. K., Bizounok, M., Herzfeld, J., Raap, J., and Lugtenburg, J. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 4643-4648.
36. Kandori, H., Yamazaki, Y., Shichida, Y., Raap, J., Lugtenburg, J., Belenky, M., and Herzfeld, J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 1571-1576.
37. Kandori, H. (1998) J. Am. Chem. Soc. 120, 4546-4547.
38. Monosmith, W. B., and Walrafen, G. E. (1984) J. Chem. Phys. 15, 669-674.
39. Kandori, H., Belenky, M., and Herzfeld, J. (2002) Biochemistry 41, 6026-6031.
40. Needleman, R., Chang, M., Ni, B., Váró, G., Fomés, J., White, S. H., and Lanyi, J. K. (1991) J. Biol. Chem. 266, 11478-11484.
41. Hayashi, S., Tajkhorshid, E., and Schulten, K. (2002) Biophys. J. 83, 1281-1297.
42. Kolbe, M., Besir, H., Essen, L.-O., and Oesterhelt, D. (2000) Science 288, 1390-1396.
43. Moltke, S., Krebs, M. P., Mollaaghababa, R., Khorana, H. G., and Heyn, M. P. (1995) Biophys. J. 69, 2074-2083.
44. Brown, L. S., Váró, G., Hatanaka, M., Sasaki, J., Kandori, H., Maeda, A., Friedman, N., Sheves, M., Needleman, R., and Lanyi, J. K. (1995) Biochemistry 34, 12903-12911.
45. Gat, Y., and Sheves, M. (1993) J. Am. Chem. Soc. 115, 3772-3773.
46. Rousso, I., Friedman, N., Sheves, M., and Ottolenghi, M. (1995) Biochemistry 34, 12059-12065.
47. Cao, Y., Váró, G., Chang, M., Ni, B., Needleman, R., and Lanyi, J. K. (1991) Biochemistry 30, 10972-10979.
48. Subramaniam, S., Lindahl, M., Bullough, P., Faruqi, A. R., Tittor, J., Oesterhelt, D., Brown, L., Lanyi, J., and Henderson, R. (1999) J. Mol. Biol. 287, 145-161.
49. Vonck, J. (2000) EMBO J. 19, 2152-2160.