-
1
-
-
0034519206
-
Retinylidene proteins: Structures and functions from archaea to humans
-
Spudich, J. L., Yang, C., Jung, K., and Spudich, E. N. (2000) Retinylidene proteins: Structures and functions from archaea to humans, Annu. Rev. Cell Dev. Biol. 16, 365-392.
-
(2000)
Annu. Rev. Cell Dev. Biol.
, vol.16
, pp. 365-392
-
-
Spudich, J.L.1
Yang, C.2
Jung, K.3
Spudich, E.N.4
-
2
-
-
85056356471
-
Microbial rhodopsins: Transport and sensory proteins throughout the three domains of life
-
(Horspool, W. M., and Lenci, F., Eds.) 2nd ed., section II photobiology, CRC Press, Boca Raton, FL
-
Jung, K. H., and Spudich, J. L. (2004) Microbial rhodopsins: Transport and sensory proteins throughout the three domains of life, in CRC Handbook of Organic Photochemistry and Photobiology (Horspool, W. M., and Lenci, F., Eds.) 2nd ed., section II photobiology, pp 124/1-124/11, CRC Press, Boca Raton, FL.
-
(2004)
CRC Handbook of Organic Photochemistry and Photobiology
-
-
Jung, K.H.1
Spudich, J.L.2
-
3
-
-
0037189362
-
Channelrhodopsin-1: A light-gated proton channel in green algae
-
Nagel, G., Ollig, D., Fuhrmann, M., Kateriya, S., Musti, A. M., Bamberg, E., and Hegemann, P. (2002) Channelrhodopsin-1: A light-gated proton channel in green algae, Science 296, 2395-2398.
-
(2002)
Science
, vol.296
, pp. 2395-2398
-
-
Nagel, G.1
Ollig, D.2
Fuhrmann, M.3
Kateriya, S.4
Musti, A.M.5
Bamberg, E.6
Hegemann, P.7
-
4
-
-
0037173051
-
Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii
-
Sineshchekov, O. A., Jung, K.-H., and Spudich, J. L. (2002) Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii, Proc. Natl. Acad. Sci. U.S.A. 99, 8689-8694.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 8689-8694
-
-
Sineshchekov, O.A.1
Jung, K.-H.2
Spudich, J.L.3
-
5
-
-
12944270421
-
Genome sequence of Halobacterium species NRC-1
-
Ng, W. V., Kennedy, S. P., Mahairas, G. G., Berquist, B., Pan, M., Shukla, H. D., Lasky, S. R., Baliga, N. S., Thorsson, V., Sbrogna, J., Swartzell, S., Weir, D., Hall, J., Dahl, T. A., Welti, R., Goo, Y. A., Leithauser, B., Keller, K., Cruz, R., Danson, M. J., Hough, D. W., and Maddocks, D. (2000) Genome sequence of Halobacterium species NRC-1, Proc. Natl. Acad. Sci. U.S.A. 97, 12176-12181.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 12176-12181
-
-
Ng, W.V.1
Kennedy, S.P.2
Mahairas, G.G.3
Berquist, B.4
Pan, M.5
Shukla, H.D.6
Lasky, S.R.7
Baliga, N.S.8
Thorsson, V.9
Sbrogna, J.10
Swartzell, S.11
Weir, D.12
Hall, J.13
Dahl, T.A.14
Welti, R.15
Goo, Y.A.16
Leithauser, B.17
Keller, K.18
Cruz, R.19
Danson, M.J.20
Hough, D.W.21
Maddocks, D.22
more..
-
6
-
-
0031282975
-
Mechanism of ion transport across membranes
-
Lanyi, J. K. (1997) Mechanism of ion transport across membranes, J. Biol. Chem. 272, 31209-31212.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 31209-31212
-
-
Lanyi, J.K.1
-
7
-
-
0032987196
-
Closing in on bacteriorhodopsin: Progress in understanding the molecule
-
Haupts, U., Tittor, J., and Oesterhelt, D. (1999) Closing in on bacteriorhodopsin: Progress in understanding the molecule, Annu. Rev. Biophys. Biomol. Struct. 28, 367-399.
-
(1999)
Annu. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 367-399
-
-
Haupts, U.1
Tittor, J.2
Oesterhelt, D.3
-
8
-
-
0025304015
-
Halorhodopsin, a light-driven electrogenic chloride-transport system
-
Lanyi, J. K. (1990) Halorhodopsin, a light-driven electrogenic chloride-transport system, Physiol. Rev. 70, 319-330.
-
(1990)
Physiol. Rev.
, vol.70
, pp. 319-330
-
-
Lanyi, J.K.1
-
9
-
-
0030906654
-
Molecular mechanism of photosignaling by archaeal sensory rhodopsins
-
Hoff, W. D., Jung, K. H., and Spudich, J. L. (1997) Molecular mechanism of photosignaling by archaeal sensory rhodopsins, Annu. Rev. Biophys. Biomol. Struct. 26, 223-258.
-
(1997)
Annu. Rev. Biophys. Biomol. Struct.
, vol.26
, pp. 223-258
-
-
Hoff, W.D.1
Jung, K.H.2
Spudich, J.L.3
-
10
-
-
0035498353
-
Photochemistry and photoinduced proton-transfer by pharaonis phoborhodopsin
-
Kamo, N., Shimono, K., Iwamoto, M., and Sudo, Y. (2001) Photochemistry and photoinduced proton-transfer by pharaonis phoborhodopsin, Biochemistry (Moscow) 66, 1277-1282.
-
(2001)
Biochemistry (Moscow)
, vol.66
, pp. 1277-1282
-
-
Kamo, N.1
Shimono, K.2
Iwamoto, M.3
Sudo, Y.4
-
11
-
-
0034734230
-
Proton transport by sensory rhodopsins and its modulation by transducer-binding
-
Sasaki, J., and Spudich, J. L. (2000) Proton transport by sensory rhodopsins and its modulation by transducer-binding, Biochim. Biophys. Acta 1460, 230-239.
-
(2000)
Biochim. Biophys. Acta
, vol.1460
, pp. 230-239
-
-
Sasaki, J.1
Spudich, J.L.2
-
12
-
-
3242797479
-
Fungal rhodopsins and opsin-related proteins: Eukaryotic homologues of bacteriorhodopsin with unknown functions
-
Brown, L. S. (2004) Fungal rhodopsins and opsin-related proteins: Eukaryotic homologues of bacteriorhodopsin with unknown functions, Photochem. Photobiol. Sci. 3, 555-565.
-
(2004)
Photochem. Photobiol. Sci.
, vol.3
, pp. 555-565
-
-
Brown, L.S.1
-
13
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
Beja, O., Aravind, L., Koonin, E. V., Suzuki, M. T., Hadd, A., Nguyen, L. P., Jovanovich, S. B., Gates, C. M., Feldman, R. A., Spudich, J. L., Spudich, E. N., and DeLong, E. F. (2000) Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea, Science 289, 1902-1906.
-
(2000)
Science
, vol.289
, pp. 1902-1906
-
-
Beja, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
Jovanovich, S.B.7
Gates, C.M.8
Feldman, R.A.9
Spudich, J.L.10
Spudich, E.N.11
DeLong, E.F.12
-
14
-
-
0242331634
-
Proteorhodopsin genes are distributed among divergent marine bacterial taxa
-
de la Torre, J. R., Christianson, L. M., Beja, O., Suzuki, M. T., Karl, D. M., Heidelberg, J., and DeLong, E. F. (2003) Proteorhodopsin genes are distributed among divergent marine bacterial taxa, Proc. Natl. Acad. Sci. U.S.A. 100, 12830-12835.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 12830-12835
-
-
De La Torre, J.R.1
Christianson, L.M.2
Beja, O.3
Suzuki, M.T.4
Karl, D.M.5
Heidelberg, J.6
DeLong, E.F.7
-
15
-
-
0037346546
-
Demonstration of a sensory rhodopsin in eubacteria
-
Jung, K. H., Trivedi, V. D., and Spudich, J. L. (2003) Demonstration of a sensory rhodopsin in eubacteria, Mol. Microbiol. 47, 1513-1522.
-
(2003)
Mol. Microbiol.
, vol.47
, pp. 1513-1522
-
-
Jung, K.H.1
Trivedi, V.D.2
Spudich, J.L.3
-
16
-
-
0033529279
-
The nop-1 gene of Neurospora crassa encodes a seven transmembrane helix retinal-binding protein homologous to archaeal rhodopsins
-
Bieszke, J. A., Braun, E. L., Bean, L. E., Kang, S., Natvig, D. O., and Borkovich, K. A. (1999) The nop-1 gene of Neurospora crassa encodes a seven transmembrane helix retinal-binding protein homologous to archaeal rhodopsins, Proc. Natl. Acad. Sci. U.S.A. 96, 8034-8039.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 8034-8039
-
-
Bieszke, J.A.1
Braun, E.L.2
Bean, L.E.3
Kang, S.4
Natvig, D.O.5
Borkovich, K.A.6
-
17
-
-
0038009383
-
Novel dinoflagellate clock-related genes identified through microarray analysis
-
Okamoto, O. K., and Hastings, J. W. (2003) Novel dinoflagellate clock-related genes identified through microarray analysis, J. Phycol. 39, 519-526.
-
(2003)
J. Phycol.
, vol.39
, pp. 519-526
-
-
Okamoto, O.K.1
Hastings, J.W.2
-
18
-
-
0033607149
-
A eukaryotic protein, NOP-1, binds retinal to form an archaeal rhodopsin-like photochemically reactive pigment
-
Bieszke, J. A., Spudich, E. N., Scott, K. L., Borkovich, K. A., and Spudich, J. L. (1999) A eukaryotic protein, NOP-1, binds retinal to form an archaeal rhodopsin-like photochemically reactive pigment, Biochemistry 38, 14138-14145.
-
(1999)
Biochemistry
, vol.38
, pp. 14138-14145
-
-
Bieszke, J.A.1
Spudich, E.N.2
Scott, K.L.3
Borkovich, K.A.4
Spudich, J.L.5
-
19
-
-
0035979995
-
Photochemical reaction cycle and proton transfers in Neurospora rhodopsin
-
Brown, L. S., Dioumaev, A. K., Lanyi, J. K., Spudich, E. N., and Spudich, J. L. (2001) Photochemical reaction cycle and proton transfers in Neurospora rhodopsin, J. Biol. Chem. 276, 32495-32505.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 32495-32505
-
-
Brown, L.S.1
Dioumaev, A.K.2
Lanyi, J.K.3
Spudich, E.N.4
Spudich, J.L.5
-
20
-
-
0036727510
-
A Fourier transform infrared study of Neurospora rhodopsin: Similarities with archaeal rhodopsins
-
Bergo, V., Spudich, E. N., Spudich, J. L., and Rothschild, K. J. (2002) A Fourier transform infrared study of Neurospora rhodopsin: Similarities with archaeal rhodopsins, Photochem. Photobiol. 76, 341-349.
-
(2002)
Photochem. Photobiol.
, vol.76
, pp. 341-349
-
-
Bergo, V.1
Spudich, E.N.2
Spudich, J.L.3
Rothschild, K.J.4
-
21
-
-
0035058358
-
Characterization of an opsin gene from the ascomycete Leptosphaeria maculans
-
Idnurm, A., and Howlett, B. J. (2001) Characterization of an opsin gene from the ascomycete Leptosphaeria maculans, Genome 44, 167-171.
-
(2001)
Genome
, vol.44
, pp. 167-171
-
-
Idnurm, A.1
Howlett, B.J.2
-
22
-
-
0141480266
-
An ordered collection of expressed sequences from Cryphonectria parasitica and evidence of genomic microsynteny with Neurospora crassa and Magnaporthe grisea
-
Dawe, A. L., McMains, V. C., Panglao, M., Kasahara, S., Chen, B., and Nuss, D. L. (2003) An ordered collection of expressed sequences from Cryphonectria parasitica and evidence of genomic microsynteny with Neurospora crassa and Magnaporthe grisea, Microbiology 149, 2373-2384.
-
(2003)
Microbiology
, vol.149
, pp. 2373-2384
-
-
Dawe, A.L.1
McMains, V.C.2
Panglao, M.3
Kasahara, S.4
Chen, B.5
Nuss, D.L.6
-
23
-
-
0033947041
-
A group of expressed cDNA sequences from the wheat fungal leaf blotch pathogen, Mycosphaerella graminicola (Septoria tritici)
-
Keon, J., Bailey, A., and Hargreaves, J. (2000) A group of expressed cDNA sequences from the wheat fungal leaf blotch pathogen, Mycosphaerella graminicola (Septoria tritici), Fungal Genet. Biol. 29, 118-133.
-
(2000)
Fungal Genet. Biol.
, vol.29
, pp. 118-133
-
-
Keon, J.1
Bailey, A.2
Hargreaves, J.3
-
24
-
-
0037418568
-
Structural changes of water in the Schiff base region of bacteriorhodopsin: Proposal of a hydration switch model
-
Tanimoto, T., Furutani, Y., and Kandori, H. (2003) Structural changes of water in the Schiff base region of bacteriorhodopsin: Proposal of a hydration switch model, Biochemistry 42, 2300-2306.
-
(2003)
Biochemistry
, vol.42
, pp. 2300-2306
-
-
Tanimoto, T.1
Furutani, Y.2
Kandori, H.3
-
25
-
-
0346727449
-
Local-global conformational coupling in a heptahelical membrane protein: Transport mechanism from crystal structures of the nine states in the bacteriorhodopsin photocycle
-
Lanyi, J. K., and Schobert, B. (2004) Local-global conformational coupling in a heptahelical membrane protein: Transport mechanism from crystal structures of the nine states in the bacteriorhodopsin photocycle, Biochemistry 43, 3-8.
-
(2004)
Biochemistry
, vol.43
, pp. 3-8
-
-
Lanyi, J.K.1
Schobert, B.2
-
26
-
-
21244499919
-
Lipids of purple membrane from extreme halophiles and of methanogenic bacteria
-
Kates, M., Kushwaha, S. C., and Sprott, G. D. (1982) Lipids of purple membrane from extreme halophiles and of methanogenic bacteria, Methods Enzymol. 88, 98-111.
-
(1982)
Methods Enzymol.
, vol.88
, pp. 98-111
-
-
Kates, M.1
Kushwaha, S.C.2
Sprott, G.D.3
-
27
-
-
0029671418
-
1ATP synthase from thermophilic Bacillus PS3 reconstituted into liposomes with bacteriorhodopsin. 1. Factors defining the optimal reconstitution of ATP synthases with bacteriorhodopsin
-
1ATP synthase from thermophilic Bacillus PS3 reconstituted into liposomes with bacteriorhodopsin. 1. Factors defining the optimal reconstitution of ATP synthases with bacteriorhodopsin, Eur. J. Biochem. 235, 769-778.
-
(1996)
Eur. J. Biochem.
, vol.235
, pp. 769-778
-
-
Pitard, B.1
Richard, P.2
Duñach, M.3
Girault, G.4
Rigaud, J.-L.5
-
28
-
-
0035822679
-
Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore: Infrared spectral comparison with bacteriorhodopsin
-
Kandori, H., Shimono, K., Sudo, Y., Iwamoto, M., Shichida, Y., and Kamo, N. (2001) Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore: Infrared spectral comparison with bacteriorhodopsin, Biochemistry 40, 9238-9246.
-
(2001)
Biochemistry
, vol.40
, pp. 9238-9246
-
-
Kandori, H.1
Shimono, K.2
Sudo, Y.3
Iwamoto, M.4
Shichida, Y.5
Kamo, N.6
-
29
-
-
0035951066
-
Internal water molecules of pharaonis phoborhodopsin studied by low-temperature infrared spectroscopy
-
Kandori, H., Furutani, Y., Shimono, K., Shichida, Y., and Kamo, N. (2001) Internal water molecules of pharaonis phoborhodopsin studied by low-temperature infrared spectroscopy, Biochemistry 40, 15693-15698.
-
(2001)
Biochemistry
, vol.40
, pp. 15693-15698
-
-
Kandori, H.1
Furutani, Y.2
Shimono, K.3
Shichida, Y.4
Kamo, N.5
-
30
-
-
0000557270
-
Protein structural changes in bacteriorhodopsin upon photoisomerization as revealed by polarized FTIR spectroscopy
-
Kandori, H., Kinoshita, N., Shichida, Y., and Maeda, A. (1998) Protein structural changes in bacteriorhodopsin upon photoisomerization as revealed by polarized FTIR spectroscopy, J. Phys. Chem. B 102, 7899-7905.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 7899-7905
-
-
Kandori, H.1
Kinoshita, N.2
Shichida, Y.3
Maeda, A.4
-
31
-
-
0017741644
-
Resonance Raman studies of the purple membrane
-
Aton, B., Doukas, A. G., Callender, R. H., Becher, B. and Ebrey, T. G. (1977) Resonance Raman studies of the purple membrane, Biochemistry 16, 2995-2999.
-
(1977)
Biochemistry
, vol.16
, pp. 2995-2999
-
-
Aton, B.1
Doukas, A.G.2
Callender, R.H.3
Becher, B.4
Ebrey, T.G.5
-
32
-
-
85005500629
-
Application of FTIR spectroscopy to the structural study on the function of bacteriorhodopsin
-
Maeda, A. (1995) Application of FTIR spectroscopy to the structural study on the function of bacteriorhodopsin, Isr. J. Chem. 35, 387-400.
-
(1995)
Isr. J. Chem.
, vol.35
, pp. 387-400
-
-
Maeda, A.1
-
33
-
-
0021848415
-
Determination of retinal chromophore structure in bacteriorhodopsin with resonance Raman spectroscopy
-
Smith, S. O., Lugtenburg, J., and Mathies, R. A. (1985) Determination of retinal chromophore structure in bacteriorhodopsin with resonance Raman spectroscopy, J. Membr. Biol. 85, 95-109.
-
(1985)
J. Membr. Biol.
, vol.85
, pp. 95-109
-
-
Smith, S.O.1
Lugtenburg, J.2
Mathies, R.A.3
-
34
-
-
84989669798
-
Fourier transform infrared spectral studies on the Schiff base mode of all-trans bacteriorhodopsin and its photointermediates, K and L
-
Maeda, A., Sasaki, J., Pfefferlé, J.-M., Shichida, Y., and Yoshizawa, T. (1991) Fourier transform infrared spectral studies on the Schiff base mode of all-trans bacteriorhodopsin and its photointermediates, K and L. Photochem. Photobiol. 54, 911-921.
-
(1991)
Photochem. Photobiol.
, vol.54
, pp. 911-921
-
-
Maeda, A.1
Sasaki, J.2
Pfefferlé, J.-M.3
Shichida, Y.4
Yoshizawa, T.5
-
35
-
-
0001268741
-
Vibrational analysis of the all-trans-retinal chromophore in light-adapted bacteriorhodopsin
-
Smith, S. O., Braiman, M. S., Myers, A. B., Pardoen, J. A., Courtin, J. M. L., Winkel, C., Lugtenburg, J., and Mathies, R. A. (1987) Vibrational analysis of the all-trans-retinal chromophore in light-adapted bacteriorhodopsin, J. Am. Chem. Soc. 109, 3108-3125.
-
(1987)
J. Am. Chem. Soc.
, vol.109
, pp. 3108-3125
-
-
Smith, S.O.1
Braiman, M.S.2
Myers, A.B.3
Pardoen, J.A.4
Courtin, J.M.L.5
Winkel, C.6
Lugtenburg, J.7
Mathies, R.A.8
-
36
-
-
0000311181
-
Evidence for light-induced 13-cis, 14-s-cis isomerization in bacteriorhodopsin obtained by FTIR difference spectroscopy using isotopically labeled retinals
-
Gerwert, K., and Siebert, F. (1986) Evidence for light-induced 13-cis, 14-s-cis isomerization in bacteriorhodopsin obtained by FTIR difference spectroscopy using isotopically labeled retinals, EMBO J. 5, 805-811.
-
(1986)
EMBO J.
, vol.5
, pp. 805-811
-
-
Gerwert, K.1
Siebert, F.2
-
37
-
-
0025829307
-
From femtoseconds to biology: Mechanism of bacteriorhodopsin's light-driven proton pump
-
Mathies, R. A., Lin, S. W., Ames, J. B., and Pollard, W. T. (1991) From femtoseconds to biology: Mechanism of bacteriorhodopsin's light-driven proton pump, Annu. Rev. Biophys. Biophys. Chem. 20, 491-518.
-
(1991)
Annu. Rev. Biophys. Biophys. Chem.
, vol.20
, pp. 491-518
-
-
Mathies, R.A.1
Lin, S.W.2
Ames, J.B.3
Pollard, W.T.4
-
38
-
-
0026643216
-
FTIR difference spectroscopy of bacteriorhodopsin: Toward a molecular model
-
Rothschild, K. J. (1992) FTIR difference spectroscopy of bacteriorhodopsin: Toward a molecular model, J. Bioenerg. Biomembr. 24, 147-167.
-
(1992)
J. Bioenerg. Biomembr.
, vol.24
, pp. 147-167
-
-
Rothschild, K.J.1
-
39
-
-
0028909764
-
Infrared spectroscopy applied to biochemical and biological problems
-
Siebert, F. (1995) Infrared spectroscopy applied to biochemical and biological problems, Methods Enzymol. 246, 501-526.
-
(1995)
Methods Enzymol.
, vol.246
, pp. 501-526
-
-
Siebert, F.1
-
40
-
-
0032877232
-
Molecular reaction mechanisms of proteins monitored by time-resolved FTIR-spectroscopy
-
Gerwert, K. (1999) Molecular reaction mechanisms of proteins monitored by time-resolved FTIR-spectroscopy, Biol. Chem. 380, 931-935.
-
(1999)
Biol. Chem.
, vol.380
, pp. 931-935
-
-
Gerwert, K.1
-
41
-
-
0021103472
-
Investigation of the primary photochemistry of bacteriorhodopsin by low-temperature Fourier-transform infrared spectroscopy
-
Siebert, F., and Mäntele, W. (1983) Investigation of the primary photochemistry of bacteriorhodopsin by low-temperature Fourier-transform infrared spectroscopy, Eur. J. Biochem. 130, 565-573.
-
(1983)
Eur. J. Biochem.
, vol.130
, pp. 565-573
-
-
Siebert, F.1
Mäntele, W.2
-
42
-
-
0023959207
-
Analysis of the factors that influence the C=N stretching frequency of polyene Schiff bases. Implications for bacteriorhodopsin and rhodopsin
-
Rodman-Gilson, H. S., Honig, B., Croteau, A., Zarrilli, G., and Nakanishi, K. (1988) Analysis of the factors that influence the C=N stretching frequency of polyene Schiff bases. Implications for bacteriorhodopsin and rhodopsin, Biophys. J. 53, 261-269.
-
(1988)
Biophys. J.
, vol.53
, pp. 261-269
-
-
Rodman-Gilson, H.S.1
Honig, B.2
Croteau, A.3
Zarrilli, G.4
Nakanishi, K.5
-
43
-
-
0023228884
-
Factors affecting the C=N stretching in protonated retinal Schiff base: A model study for bacteriorhodspsin and visual pigments
-
Baasov, T., Friedman, N., and Sheves, M. (1987) Factors affecting the C=N stretching in protonated retinal Schiff base: A model study for bacteriorhodspsin and visual pigments, Biochemistry 26, 3210-3217.
-
(1987)
Biochemistry
, vol.26
, pp. 3210-3217
-
-
Baasov, T.1
Friedman, N.2
Sheves, M.3
-
44
-
-
0021755238
-
Fourier transform infrared evidence for Schiff base alteration in the first step of the bacteriorhodopsin photocycle
-
Rothschild, K. J., Roepe, P., Lugtenburg, J., and Pardoen, J. A. (1984) Fourier transform infrared evidence for Schiff base alteration in the first step of the bacteriorhodopsin photocycle, Biochemistry 23, 6103-6109.
-
(1984)
Biochemistry
, vol.23
, pp. 6103-6109
-
-
Rothschild, K.J.1
Roepe, P.2
Lugtenburg, J.3
Pardoen, J.A.4
-
45
-
-
0023228638
-
Resonance Raman study of intermediates of the halorhodopsin photocycle
-
Diller, R., Stockburger, M., Oesterhelt, D., and Tittor, J. (1987) Resonance Raman study of intermediates of the halorhodopsin photocycle, FEBS Lett. 217, 297-304.
-
(1987)
FEBS Lett.
, vol.217
, pp. 297-304
-
-
Diller, R.1
Stockburger, M.2
Oesterhelt, D.3
Tittor, J.4
-
46
-
-
0024289369
-
Vibrational spectroscopy of bacteriorhodopsin mutants: Light-driven proton transport involves protonation changes of aspartic acid residues 85, 96, and 212
-
Braiman, M. S., Mogi, T., Marti, T., Stern, L. J., Khorana, H. G., and Rothschild, K. J. (1988) Vibrational spectroscopy of bacteriorhodopsin mutants: Light-driven proton transport involves protonation changes of aspartic acid residues 85, 96, and 212, Biochemistry 27, 8516-8520.
-
(1988)
Biochemistry
, vol.27
, pp. 8516-8520
-
-
Braiman, M.S.1
Mogi, T.2
Marti, T.3
Stern, L.J.4
Khorana, H.G.5
Rothschild, K.J.6
-
47
-
-
0029883202
-
Hydrogen bonds of water and C=O groups coordinate long-range structural changes in the L photointermediate of bacteriorhodopsin
-
Yamazaki, Y., Tuzi, S., Saitô, H., Kandori, H., Needleman, R., Lanyi, J. K., and Maeda, A. (1996) Hydrogen bonds of water and C=O groups coordinate long-range structural changes in the L photointermediate of bacteriorhodopsin, Biochemistry 35, 4063-4068.
-
(1996)
Biochemistry
, vol.35
, pp. 4063-4068
-
-
Yamazaki, Y.1
Tuzi, S.2
Saitô, H.3
Kandori, H.4
Needleman, R.5
Lanyi, J.K.6
Maeda, A.7
-
48
-
-
0020489247
-
Infrared spectrum of the purple membrane: Clue to a proton conduction mechanism?
-
Krimm, S., and Dwivedi, A. M. (1982) Infrared spectrum of the purple membrane: Clue to a proton conduction mechanism? Science 216, 407-408
-
(1982)
Science
, vol.216
, pp. 407-408
-
-
Krimm, S.1
Dwivedi, A.M.2
-
49
-
-
0034731017
-
Direct obserbation of the bridged water stretching vibrations inside a protein
-
Kandori, H., and Shichida, Y. (2000) Direct obserbation of the bridged water stretching vibrations inside a protein, J. Am. Chem. Soc. 122, 11745-11746.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 11745-11746
-
-
Kandori, H.1
Shichida, Y.2
-
50
-
-
0000384339
-
Temperature dependence of the Raman hydroxyl-stretching overtone from liquid water
-
Monosmith, W. B., and Walrafen, G. E. (1984) Temperature dependence of the Raman hydroxyl-stretching overtone from liquid water, J. Chem. Phys. 81, 669-674.
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 669-674
-
-
Monosmith, W.B.1
Walrafen, G.E.2
-
51
-
-
0002351307
-
Low-frequency Raman scattering from water and aqueous solutions: A direct measure of hydrogen-bonding
-
Walrafen, G. E., and Fisher, M. R. (1986) Low-frequency Raman scattering from water and aqueous solutions: A direct measure of hydrogen-bonding, Methods Enzymol. 127, 91-105.
-
(1986)
Methods Enzymol.
, vol.127
, pp. 91-105
-
-
Walrafen, G.E.1
Fisher, M.R.2
-
52
-
-
0242362271
-
Water molecules in the Schiff base region of bacteriorhodopsin
-
Shibata, M., Tanimoto, T., and Kandori, H. (2003) Water molecules in the Schiff base region of bacteriorhodopsin, J. Am. Chem. Soc. 125, 13312-13313.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 13312-13313
-
-
Shibata, M.1
Tanimoto, T.2
Kandori, H.3
-
53
-
-
0034321020
-
Proton transfer in bacteriorhodopsin: Structure, excitation, IR spectra, and potential energy surface analyses by an ab initio QM/MM method
-
Hayashi, S., and Ohmine, I. (2000) Proton transfer in bacteriorhodopsin: Structure, excitation, IR spectra, and potential energy surface analyses by an ab initio QM/MM method, J. Phys. Chem. B 104, 10678-10691.
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 10678-10691
-
-
Hayashi, S.1
Ohmine, I.2
-
54
-
-
0033609904
-
Structure of bacteriorhodopsin at 1.55 Å resolution
-
Luecke, H., Schobert, B., Richter, H.-T., Cartailler, J. P., and Lanyi, J. K. (1999) Structure of bacteriorhodopsin at 1.55 Å resolution, J. Mol. Biol. 291, 899-911.
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 899-911
-
-
Luecke, H.1
Schobert, B.2
Richter, H.-T.3
Cartailler, J.P.4
Lanyi, J.K.5
-
55
-
-
0033567092
-
Protein, lipid, and water organization in bacteriorhodopsin crystals: A molecular view of the purple membrane at 1.9 Å resolution
-
Belrhali, H., Nollert, P., Royant, A., Menzel, C., Rosenbusch, J. P., Landau, E. M., and Pebay-Peyroula, E. (1999) Protein, lipid, and water organization in bacteriorhodopsin crystals: A molecular view of the purple membrane at 1.9 Å resolution, Structure 15, 909-917.
-
(1999)
Structure
, vol.15
, pp. 909-917
-
-
Belrhali, H.1
Nollert, P.2
Royant, A.3
Menzel, C.4
Rosenbusch, J.P.5
Landau, E.M.6
Pebay-Peyroula, E.7
-
56
-
-
0035943457
-
Crystal structure of sensory rhodopsin II at 2.4 Å Insights into color tuning and transducer interaction
-
Luecke, H., Schobert, B., Lanyi, J. K., Spudich, E. N., and Spudich, J. L. (2001) Crystal structure of sensory rhodopsin II at 2.4 Å Insights into color tuning and transducer interaction, Science 293. 1499-1503.
-
(2001)
Science
, vol.293
, pp. 1499-1503
-
-
Luecke, H.1
Schobert, B.2
Lanyi, J.K.3
Spudich, E.N.4
Spudich, J.L.5
-
57
-
-
0035964365
-
X-ray structure of sensory rhodopsin II at 2.1-Å resolution
-
Royant, A., Nollert, P., Edman, K., Neutze, R., Landau, E. M., Pebay-Peyroulla, E., and Navarro, J. (2001) X-ray structure of sensory rhodopsin II at 2.1-Å resolution, Proc. Natl. Acad. Sci. U.S.A. 98, 10131-10136.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 10131-10136
-
-
Royant, A.1
Nollert, P.2
Edman, K.3
Neutze, R.4
Landau, E.M.5
Pebay-Peyroulla, E.6
Navarro, J.7
-
58
-
-
0034717007
-
Structure of the light-drive chloride pump halorhodopsin at 1.8 Å resolution
-
Kolbe, M., Besir, H., Essen, L. O., and Oesterhelt, D. (2000) Structure of the light-drive chloride pump halorhodopsin at 1.8 Å resolution. Science 288, 1390-1396.
-
(2000)
Science
, vol.288
, pp. 1390-1396
-
-
Kolbe, M.1
Besir, H.2
Essen, L.O.3
Oesterhelt, D.4
-
59
-
-
0024024413
-
Aspartic acid substitutions affect proton translocation by bacteriorhodopsin
-
Mogi, T., Stern, L. J., Marti, T., Chao, B. H., and Khorana, H. G. (1988) Aspartic acid substitutions affect proton translocation by bacteriorhodopsin, Proc. Natl. Acad. Sci. U.S.A. 85, 4148-4152.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 4148-4152
-
-
Mogi, T.1
Stern, L.J.2
Marti, T.3
Chao, B.H.4
Khorana, H.G.5
-
60
-
-
0033609517
-
Structural change of threonine 89 upon photoisomerization in bacteriorhodopsin as revealed by polarized FTIR spectroscopy
-
Kandori, H., Kinoshita, N., Yamazaki, Y., Maeda, A., Shichida, Y., Needleman, R., Lanyi, J. K., Bizounok, M., Herzfeld, J., Raap, J., and Lugtenburg, J. (1999) Structural change of threonine 89 upon photoisomerization in bacteriorhodopsin as revealed by polarized FTIR spectroscopy, Biochemistry 38, 9676-9683.
-
(1999)
Biochemistry
, vol.38
, pp. 9676-9683
-
-
Kandori, H.1
Kinoshita, N.2
Yamazaki, Y.3
Maeda, A.4
Shichida, Y.5
Needleman, R.6
Lanyi, J.K.7
Bizounok, M.8
Herzfeld, J.9
Raap, J.10
Lugtenburg, J.11
-
61
-
-
0035852677
-
Tight Asp-85-Thr-89 association during the pump switch of bacteriorhodopsin
-
Kandori, H., Yamazaki, Y., Shichida, Y., Raap, J., Lugtenburg, J., Belenky, M., and Herzfeld, J. (2001) Tight Asp-85-Thr-89 association during the pump switch of bacteriorhodopsin, Proc. Natl. Acad. Sci. U.S.A. 98, 1571-1576.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 1571-1576
-
-
Kandori, H.1
Yamazaki, Y.2
Shichida, Y.3
Raap, J.4
Lugtenburg, J.5
Belenky, M.6
Herzfeld, J.7
-
62
-
-
0037076526
-
Vibrational frequency and dipolar orientation of the protonated Schiff base in bacteriorhodopsin before and after photoisomerization
-
Kandori, H., Belenky, M., and Herzfeld, J. (2002) Vibrational frequency and dipolar orientation of the protonated Schiff base in bacteriorhodopsin before and after photoisomerization, Biochemistry 41, 6026-6031.
-
(2002)
Biochemistry
, vol.41
, pp. 6026-6031
-
-
Kandori, H.1
Belenky, M.2
Herzfeld, J.3
-
63
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties, and weight matrix choice
-
Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties, and weight matrix choice, Nucleic Acids Res. 22. 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
|